NP-MRD: Showing NP-Card for (-)-Sipholenol F (NP0080885)

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Record Information

Version

2.0

Created at

2022-04-29 01:52:04 UTC

Updated at

2022-04-29 01:52:04 UTC

NP-MRD ID

NP0080885

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Sipholenol F

Description

Sipholenol F belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (-)-Sipholenol F is found in Siphonochalina siphonella. Based on a literature review very few articles have been published on Sipholenol F.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292203522D          

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M  END

     RDKit          3D

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M  END


  Mrv1652304292203522D          

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    2.7920    0.2687    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5299   -2.0510    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9219   -3.3101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3890   -3.8958    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  5  8  1  6  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  4 10  1  6  0  0  0
  8 11  1  0  0  0  0
  3 12  1  0  0  0  0
  3 13  1  0  0  0  0
  2 14  1  6  0  0  0
 14 15  1  0  0  0  0
 16 15  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 16 21  1  0  0  0  0
 21 22  1  1  0  0  0
 21 23  1  6  0  0  0
 18 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 17 28  1  0  0  0  0
 26 29  1  6  0  0  0
 25 30  1  0  0  0  0
 25 31  1  0  0  0  0
 17 32  1  1  0  0  0
  1 33  1  1  0  0  0
  1 34  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0080885

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC[C@@H]2[C@H]1CC[C@](C)(O)[C@H](CC[C@H]1[C@@](C)(O)CC[C@H]3OC(C)(C)[C@H](O)CC[C@]13C)C2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C30H52O4/c1-19-9-10-21-20(19)13-17-29(7,32)22(26(21,2)3)11-12-23-28(6)16-14-24(31)27(4,5)34-25(28)15-18-30(23,8)33/h9,20-25,31-33H,10-18H2,1-8H3/t20-,21+,22+,23+,24+,25+,28+,29-,30-/m0/s1

> <INCHI_KEY>
HIZFHSNFGXRHLE-NVQVYYDJSA-N

> <FORMULA>
C30H52O4

> <MOLECULAR_WEIGHT>
476.742

> <EXACT_MASS>
476.386560154

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
86

> <JCHEM_AVERAGE_POLARIZABILITY>
57.84729931194494

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R,5aR,6R,7S,9aR)-6-{2-[(3aR,5R,6S,8aR)-6-hydroxy-1,4,4,6-tetramethyl-3,3a,4,5,6,7,8,8a-octahydroazulen-5-yl]ethyl}-2,2,5a,7-tetramethyl-decahydro-1-benzoxepine-3,7-diol

> <ALOGPS_LOGP>
5.52

> <JCHEM_LOGP>
4.8939496500000015

> <ALOGPS_LOGS>
-5.21

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.834987517105215

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.939862719842669

> <JCHEM_PKA_STRONGEST_BASIC>
-0.26386106280734334

> <JCHEM_POLAR_SURFACE_AREA>
69.92

> <JCHEM_REFRACTIVITY>
139.067

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.95e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,5aR,6R,7S,9aR)-6-{2-[(3aR,5R,6S,8aR)-6-hydroxy-1,4,4,6-tetramethyl-3,3a,5,7,8,8a-hexahydroazulen-5-yl]ethyl}-2,2,5a,7-tetramethyl-hexahydro-3H-1-benzoxepine-3,7-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      -2.951  -7.581   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.563  -6.913   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.176  -7.581   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.167  -9.082   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.793 -10.286   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.333 -10.286   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.293  -9.082   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.055 -11.572   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.540 -11.162   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.609  -9.623   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.486 -13.013   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.461  -6.179   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.333  -7.272   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.563  -5.373   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.230  -4.603   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.230  -3.063   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.104  -2.293   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.104  -0.753   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.230   0.017   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.563  -0.753   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.563  -2.293   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -3.102  -2.347   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -2.379  -3.599   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.308   0.207   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       3.810  -0.135   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.478  -1.523   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.810  -2.910   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.308  -3.253   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       6.018  -1.523   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       4.118   1.373   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       5.212   0.502   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.989  -3.828   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -3.588  -6.179   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -4.459  -7.272   0.000  0.00  0.00           O+0
CONECT    1    2    7   33   34                                             
CONECT    2    1    3   14                                                  
CONECT    3    2    4   12   13                                             
CONECT    4    3    5   10                                                  
CONECT    5    4    6    8                                                  
CONECT    6    5    7                                                       
CONECT    7    6    1                                                       
CONECT    8    5    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9    4                                                       
CONECT   11    8                                                            
CONECT   12    3                                                            
CONECT   13    3                                                            
CONECT   14    2   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   18   28   32                                             
CONECT   18   17   19   24                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   16   22   23                                             
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   18   25                                                       
CONECT   25   24   26   30   31                                             
CONECT   26   25   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27   17                                                       
CONECT   29   26                                                            
CONECT   30   25                                                            
CONECT   31   25                                                            
CONECT   32   17                                                            
CONECT   33    1                                                            
CONECT   34    1                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₅₂O₄

Average Mass

476.7420 Da

Monoisotopic Mass

476.38656 Da

IUPAC Name

(3R,5aR,6R,7S,9aR)-6-{2-[(3aR,5R,6S,8aR)-6-hydroxy-1,4,4,6-tetramethyl-3,3a,4,5,6,7,8,8a-octahydroazulen-5-yl]ethyl}-2,2,5a,7-tetramethyl-decahydro-1-benzoxepine-3,7-diol

Traditional Name

(3R,5aR,6R,7S,9aR)-6-{2-[(3aR,5R,6S,8aR)-6-hydroxy-1,4,4,6-tetramethyl-3,3a,5,7,8,8a-hexahydroazulen-5-yl]ethyl}-2,2,5a,7-tetramethyl-hexahydro-3H-1-benzoxepine-3,7-diol

CAS Registry Number

Not Available

SMILES

CC1=CC[C@@H]2[C@H]1CC[C@](C)(O)[C@H](CC[C@H]1[C@@](C)(O)CC[C@H]3OC(C)(C)[C@H](O)CC[C@]13C)C2(C)C

InChI Identifier

InChI=1S/C30H52O4/c1-19-9-10-21-20(19)13-17-29(7,32)22(26(21,2)3)11-12-23-28(6)16-14-24(31)27(4,5)34-25(28)15-18-30(23,8)33/h9,20-25,31-33H,10-18H2,1-8H3/t20-,21+,22+,23+,24+,25+,28+,29-,30-/m0/s1

InChI Key

HIZFHSNFGXRHLE-NVQVYYDJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Callyspongia siphonella	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Oxepane
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.52	ALOGPS
logP	4.89	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	13.94	ChemAxon
pKa (Strongest Basic)	-0.26	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	69.92 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	139.07 m³·mol⁻¹	ChemAxon
Polarizability	57.85 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00046405

Chemspider ID

10205807

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21588162

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Sipholenol F (NP0080885)

MOL for NP0080885 ((-)-Sipholenol F)

3D MOL for NP0080885 ((-)-Sipholenol F)

3D SDF for NP0080885 ((-)-Sipholenol F)

3D-SDF for NP0080885 ((-)-Sipholenol F)

PDB for NP0080885 ((-)-Sipholenol F)

3D PDB for NP0080885 ((-)-Sipholenol F)

SMILES for NP0080885 ((-)-Sipholenol F)

INCHI for NP0080885 ((-)-Sipholenol F)

Structure for NP0080885 ((-)-Sipholenol F)

3D Structure for NP0080885 ((-)-Sipholenol F)