NP-MRD: Showing NP-Card for (-)-Atratoglaucoside B (NP0080476)

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Record Information

Version

2.0

Created at

2022-04-29 01:29:40 UTC

Updated at

2022-04-29 01:29:40 UTC

NP-MRD ID

NP0080476

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Atratoglaucoside B

Description

(4S,5R,8S,13R,16S,19R,22R)-8-{[(2R,3R,4R,5R,6R)-3-hydroxy-5-{[(2S,4S,5R,6S)-5-{[(2S,4S,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-5,19-dimethyl-15,18,20-trioxapentacyclo[14.5.1.0⁴,¹³.0⁵,¹⁰.0¹⁹,²²]Docosa-1,10-diene-14,21-dione belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds. (-)-Atratoglaucoside B is found in Cynanchum atratum. Based on a literature review very few articles have been published on (4S,5R,8S,13R,16S,19R,22R)-8-{[(2R,3R,4R,5R,6R)-3-hydroxy-5-{[(2S,4S,5R,6S)-5-{[(2S,4S,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-5,19-dimethyl-15,18,20-trioxapentacyclo[14.5.1.0⁴,¹³.0⁵,¹⁰.0¹⁹,²²]Docosa-1,10-diene-14,21-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292203292D          

 58 65  0  0  1  0            999 V2000
    8.5345   -4.2368    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.8650   -3.4809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    7.5557   -2.9084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    7.7146   -4.3285    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3841   -5.0844    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5642   -5.1761    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0748   -4.5119    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2549   -4.6037    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9244   -5.3596    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.4138   -6.0237    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2337   -5.9320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0833   -6.7796    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2634   -6.8714    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1045   -5.4513    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.6195    1.0767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.1386   -0.5268    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4691    0.2291    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2364    1.0206    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5494    1.4773    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7295    1.3856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1604    0.7884    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.1326    0.4568    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    9.0238   -4.9010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  1  0  0  0
  8  7  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  8 13  1  0  0  0  0
 12 14  1  6  0  0  0
 14 15  1  0  0  0  0
 11 16  1  6  0  0  0
 10 17  1  1  0  0  0
  5 18  1  1  0  0  0
 18 19  1  0  0  0  0
  3 20  1  6  0  0  0
 21 20  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 21 27  1  0  0  0  0
 27 28  1  1  0  0  0
 28 29  1  0  0  0  0
 26 30  1  6  0  0  0
 25 31  1  1  0  0  0
 32 31  1  6  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 39 38  1  1  0  0  0
 39 40  1  0  0  0  0
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 40 41  1  6  0  0  0
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 43 53  1  0  0  0  0
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 36 56  1  0  0  0  0
 32 56  1  0  0  0  0
 35 57  1  6  0  0  0
  1 58  1  1  0  0  0
M  END

     RDKit          3D

120127  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652304292203292D          

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M  END
> <DATABASE_ID>
NP0080476

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@H]1C[C@H](O[C@@H]2[C@H](C)O[C@H](C[C@@H]2OC)O[C@@H]2[C@@H](C)O[C@@H](O[C@H]3CC[C@]4(C)[C@H]5C\C=C6/[C@@H]7[C@@H](CO[C@]7(C)OC6=O)OC(=O)[C@@H]5CC=C4C3)[C@H](O)[C@H]2OC)O[C@H](C)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C42H62O16/c1-19-33(43)27(47-6)16-30(51-19)56-35-20(2)52-31(17-28(35)48-7)57-36-21(3)53-40(34(44)37(36)49-8)54-23-13-14-41(4)22(15-23)9-10-24-26(41)12-11-25-32-29(55-38(24)45)18-50-42(32,5)58-39(25)46/h9,11,19-21,23-24,26-37,40,43-44H,10,12-18H2,1-8H3/b25-11+/t19-,20+,21-,23+,24-,26+,27+,28+,29-,30+,31+,32-,33-,34-,35-,36-,37-,40+,41+,42-/m1/s1

> <INCHI_KEY>
GFGOAZVLUCHIET-CDUOFUDFSA-N

> <FORMULA>
C42H62O16

> <MOLECULAR_WEIGHT>
822.942

> <EXACT_MASS>
822.403785916

> <JCHEM_ACCEPTOR_COUNT>
14

> <JCHEM_ATOM_COUNT>
120

> <JCHEM_AVERAGE_POLARIZABILITY>
87.81073222591121

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1E,4S,5R,8S,13R,16S,19R,22R)-8-{[(2R,3R,4R,5R,6R)-3-hydroxy-5-{[(2S,4S,5R,6S)-5-{[(2S,4S,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-5,19-dimethyl-15,18,20-trioxapentacyclo[14.5.1.0^{4,13}.0^{5,10}.0^{19,22}]docosa-1,10-diene-14,21-dione

> <ALOGPS_LOGP>
2.90

> <JCHEM_LOGP>
3.71048681333333

> <ALOGPS_LOGS>
-4.21

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
8

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.272441681072607

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.307157396315777

> <JCHEM_PKA_STRONGEST_BASIC>
-3.521454384983134

> <JCHEM_POLAR_SURFACE_AREA>
185.35999999999999

> <JCHEM_REFRACTIVITY>
200.79000000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.03e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1E,4S,5R,8S,13R,16S,19R,22R)-8-{[(2R,3R,4R,5R,6R)-3-hydroxy-5-{[(2S,4S,5R,6S)-5-{[(2S,4S,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-5,19-dimethyl-15,18,20-trioxapentacyclo[14.5.1.0^{4,13}.0^{5,10}.0^{19,22}]docosa-1,10-diene-14,21-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      15.931  -7.909   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      16.548  -6.498   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      15.635  -5.258   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      14.104  -5.429   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      13.487  -6.840   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.401  -8.080   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      13.784  -9.491   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      12.253  -9.662   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      11.340  -8.422   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       9.809  -8.593   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.192 -10.004   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.106 -11.244   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.636 -11.073   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       9.489 -12.655   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       7.958 -12.827   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       7.662 -10.176   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       8.896  -7.354   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      11.957  -7.011   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      11.043  -5.771   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      16.251  -3.847   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      15.338  -2.607   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      13.808  -2.778   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      13.191  -4.189   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      12.894  -1.538   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      13.511  -0.127   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      15.041   0.044   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      15.955  -1.196   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      17.485  -1.025   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      18.399  -2.265   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      15.658   1.455   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      12.598   1.112   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      11.067   0.941   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.154   2.181   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       8.623   2.010   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       8.006   0.599   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       8.920  -0.641   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       8.303  -2.052   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       6.772  -2.223   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       5.859  -0.983   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       6.476   0.428   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       6.041   1.905   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       4.759   2.758   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       3.228   2.586   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       2.166   1.472   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       2.069  -0.065   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0       2.982  -1.305   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0       4.479  -1.668   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0       4.650  -3.198   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0       0.577  -0.448   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      -0.248   0.853   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0       0.734   2.039   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0       0.832   3.576   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0       2.323   3.958   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0       2.878   5.395   0.000  0.00  0.00           O+0
HETATM   55  C   UNK     0      -0.697   2.606   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      10.450  -0.470   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0       7.093   1.839   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      16.845  -9.149   0.000  0.00  0.00           C+0
CONECT    1    2    6   58                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4   20                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   18                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   17                                                  
CONECT   11   10   12   16                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12    8                                                       
CONECT   14   12   15                                                       
CONECT   15   14                                                            
CONECT   16   11                                                            
CONECT   17   10                                                            
CONECT   18    5   19                                                       
CONECT   19   18                                                            
CONECT   20    3   21                                                       
CONECT   21   20   22   27                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26   31                                                  
CONECT   26   25   27   30                                                  
CONECT   27   26   21   28                                                  
CONECT   28   27   29                                                       
CONECT   29   28                                                            
CONECT   30   26                                                            
CONECT   31   25   32                                                       
CONECT   32   31   33   56                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36   40   57                                             
CONECT   36   35   37   56                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   47                                                  
CONECT   40   39   35   41                                                  
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44   53                                                  
CONECT   44   43   45   51                                                  
CONECT   45   44   46   49                                                  
CONECT   46   45   47                                                       
CONECT   47   46   39   48                                                  
CONECT   48   47                                                            
CONECT   49   45   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   44   52   55                                             
CONECT   52   51   53                                                       
CONECT   53   52   43   54                                                  
CONECT   54   53                                                            
CONECT   55   51                                                            
CONECT   56   36   32                                                       
CONECT   57   35                                                            
CONECT   58    1                                                            
MASTER        0    0    0    0    0    0    0    0   58    0  130    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₂H₆₂O₁₆

Average Mass

822.9420 Da

Monoisotopic Mass

822.40379 Da

IUPAC Name

(1E,4S,5R,8S,13R,16S,19R,22R)-8-{[(2R,3R,4R,5R,6R)-3-hydroxy-5-{[(2S,4S,5R,6S)-5-{[(2S,4S,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-5,19-dimethyl-15,18,20-trioxapentacyclo[14.5.1.0^{4,13}.0^{5,10}.0^{19,22}]docosa-1,10-diene-14,21-dione

Traditional Name

CAS Registry Number

Not Available

SMILES

CO[C@H]1C[C@H](O[C@@H]2[C@H](C)O[C@H](C[C@@H]2OC)O[C@@H]2[C@@H](C)O[C@@H](O[C@H]3CC[C@]4(C)[C@H]5C\C=C6/[C@@H]7[C@@H](CO[C@]7(C)OC6=O)OC(=O)[C@@H]5CC=C4C3)[C@H](O)[C@H]2OC)O[C@H](C)[C@H]1O

InChI Identifier

InChI=1S/C42H62O16/c1-19-33(43)27(47-6)16-30(51-19)56-35-20(2)52-31(17-28(35)48-7)57-36-21(3)53-40(34(44)37(36)49-8)54-23-13-14-41(4)22(15-23)9-10-24-26(41)12-11-25-32-29(55-38(24)45)18-50-42(32,5)58-39(25)46/h9,11,19-21,23-24,26-37,40,43-44H,10,12-18H2,1-8H3/b25-11+/t19-,20+,21-,23+,24-,26+,27+,28+,29-,30+,31+,32-,33-,34-,35-,36-,37-,40+,41+,42-/m1/s1

InChI Key

GFGOAZVLUCHIET-CDUOFUDFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Vincetoxicum atratum	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Oligosaccharides

Alternative Parents

Substituents

Oligosaccharide
O-glycosyl compound
Glycosyl compound
Furofuran
Ketal
Oxane
Gamma butyrolactone
Dicarboxylic acid or derivatives
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Carboxylic acid derivative
Acetal
Organic oxide
Hydrocarbon derivative
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.9	ALOGPS
logP	3.71	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	12.31	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	14	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	185.36 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	200.79 m³·mol⁻¹	ChemAxon
Polarizability	87.81 Å³	ChemAxon
Number of Rings	8	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162847184

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (-)-Atratoglaucoside B (NP0080476)

MOL for NP0080476 ((-)-Atratoglaucoside B)

3D MOL for NP0080476 ((-)-Atratoglaucoside B)

3D SDF for NP0080476 ((-)-Atratoglaucoside B)

3D-SDF for NP0080476 ((-)-Atratoglaucoside B)

PDB for NP0080476 ((-)-Atratoglaucoside B)

3D PDB for NP0080476 ((-)-Atratoglaucoside B)

SMILES for NP0080476 ((-)-Atratoglaucoside B)

INCHI for NP0080476 ((-)-Atratoglaucoside B)

Structure for NP0080476 ((-)-Atratoglaucoside B)

3D Structure for NP0080476 ((-)-Atratoglaucoside B)