NP-MRD: Showing NP-Card for (+)-Sylvaticin (NP0079639)

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Record Information

Version

2.0

Created at

2022-04-29 00:38:49 UTC

Updated at

2022-04-29 00:38:49 UTC

NP-MRD ID

NP0079639

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Sylvaticin

Description

Sylvaticin belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain. (+)-Sylvaticin is found in Annona purpurea , Rollinia mucosa and Rollinia sylvatica . (+)-Sylvaticin was first documented in 2009 (PMID: 19673528). Based on a literature review a small amount of articles have been published on Sylvaticin (PMID: 35335985) (PMID: 32772561) (PMID: 23413573) (PMID: 20110904).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292202382D          

 45 47  0  0  1  0            999 V2000
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  1  2  1  0  0  0  0
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M  END

     RDKit          3D

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 39 40  1  0
 39 41  1  0
 41 42  1  0
 42 43  2  0
 26 44  1  0
 45 13  1  0
 44 23  1  0
 42 37  1  0
  1 46  1  0
  1 47  1  0
  1 48  1  0
  2 49  1  0
  2 50  1  0
  3 51  1  0
  3 52  1  0
  4 53  1  0
  4 54  1  0
  5 55  1  0
  5 56  1  0
  6 57  1  0
  6 58  1  0
  7 59  1  0
  7 60  1  0
  8 61  1  0
  8 62  1  0
  9 63  1  0
  9 64  1  0
 10 65  1  0
 10 66  1  0
 11 67  1  1
 12 68  1  0
 13 69  1  6
 14 70  1  0
 14 71  1  0
 15 72  1  0
 15 73  1  0
 16 74  1  6
 17 75  1  1
 18 76  1  0
 19 77  1  0
 19 78  1  0
 20 79  1  0
 20 80  1  0
 21 81  1  6
 22 82  1  0
 23 83  1  6
 24 84  1  0
 24 85  1  0
 25 86  1  0
 25 87  1  0
 26 88  1  1
 27 89  1  0
 27 90  1  0
 28 91  1  0
 28 92  1  0
 29 93  1  0
 29 94  1  0
 30 95  1  0
 30 96  1  0
 31 97  1  0
 31 98  1  0
 32 99  1  0
 32100  1  0
 33101  1  0
 33102  1  0
 34103  1  6
 35104  1  0
 36105  1  0
 36106  1  0
 38107  1  0
 39108  1  1
 40109  1  0
 40110  1  0
 40111  1  0
M  END


  Mrv1652304292202382D          

 45 47  0  0  1  0            999 V2000
   -8.1395   -7.5049    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9465   -7.6764    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.3590   -6.9619    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8070   -6.3488    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0533   -6.6844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3388   -6.2719    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9785   -5.5419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3654   -4.9898    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.5808   -5.2448    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5369   -4.1829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9239   -3.6308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0954   -2.8239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4823   -2.2718    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6538   -1.4648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0407   -0.9128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2122   -0.1058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5992    0.4462    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.6854    1.2667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9317    1.6022    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3797    0.9891    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7922    0.2747    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5592    1.0754    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2236    1.8290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4032    1.9153    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0676    2.6690    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5525    3.3364    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2471    2.7552    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8346    3.4697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0277    3.2981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9414    2.4777    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6951    2.1421    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2269    2.0652    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4875    2.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2020    2.0652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9165    2.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6309    2.0652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3454    2.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0599    2.0652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7744    2.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4888    2.0652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2033    2.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9178    2.0652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2269    1.2402    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0743    0.4079    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2821   -8.4301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  5  6  2  0  0  0  0
  4  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 17 16  1  6  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 17 21  1  0  0  0  0
 20 22  1  1  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  6  0  0  0
 27 25  1  6  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 27 31  1  0  0  0  0
 30 32  1  6  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 32 43  1  6  0  0  0
 22 44  1  6  0  0  0
  2 45  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0079639

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCC[C@H](O)[C@H]1CC[C@H](O1)[C@@H](O)CC[C@H](O)[C@@H]1CC[C@@H](CCCCCCC[C@@H](O)CC2=C[C@H](C)OC2=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C37H66O8/c1-3-4-5-6-7-8-12-15-18-31(39)35-23-24-36(45-35)33(41)21-20-32(40)34-22-19-30(44-34)17-14-11-9-10-13-16-29(38)26-28-25-27(2)43-37(28)42/h25,27,29-36,38-41H,3-24,26H2,1-2H3/t27-,29+,30+,31-,32-,33-,34-,35+,36-/m0/s1

> <INCHI_KEY>
HKMBLJVHVBJAIH-CGFIXGQLSA-N

> <FORMULA>
C37H66O8

> <MOLECULAR_WEIGHT>
638.927

> <EXACT_MASS>
638.475769085

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
111

> <JCHEM_AVERAGE_POLARIZABILITY>
78.22384469363271

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5S)-3-[(2R)-9-[(2R,5S)-5-[(1S,4S)-1,4-dihydroxy-4-[(2S,5R)-5-[(1S)-1-hydroxyundecyl]oxolan-2-yl]butyl]oxolan-2-yl]-2-hydroxynonyl]-5-methyl-2,5-dihydrofuran-2-one

> <ALOGPS_LOGP>
5.83

> <JCHEM_LOGP>
7.295473406333334

> <ALOGPS_LOGS>
-5.55

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.821468298464797

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.258257837995934

> <JCHEM_PKA_STRONGEST_BASIC>
-2.722022871174243

> <JCHEM_POLAR_SURFACE_AREA>
125.68000000000002

> <JCHEM_REFRACTIVITY>
178.06609999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
25

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.80e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5S)-3-[(2R)-9-[(2R,5S)-5-[(1S,4S)-1,4-dihydroxy-4-[(2S,5R)-5-[(1S)-1-hydroxyundecyl]oxolan-2-yl]butyl]oxolan-2-yl]-2-hydroxynonyl]-5-methyl-5H-furan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0     -15.194 -14.009   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0     -16.700 -14.329   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -17.470 -12.996   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -16.440 -11.851   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -15.033 -12.478   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0     -13.699 -11.708   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0     -16.760 -10.345   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -15.615  -9.314   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0     -14.151  -9.790   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0     -15.936  -7.808   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -14.791  -6.778   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -15.111  -5.271   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -13.967  -4.241   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -14.287  -2.734   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -13.143  -1.704   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -13.463  -0.198   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0     -12.318   0.833   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -12.479   2.364   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -11.073   2.991   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -10.042   1.846   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0     -10.812   0.513   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -8.511   2.007   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -7.884   3.414   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -6.353   3.575   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -5.726   4.982   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -6.631   6.228   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -4.195   5.143   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -3.425   6.477   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -1.918   6.157   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -1.757   4.625   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -3.164   3.999   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -0.424   3.855   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.910   4.625   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       2.244   3.855   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       3.577   4.625   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       4.911   3.855   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       6.245   4.625   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       7.578   3.855   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       8.912   4.625   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      10.246   3.855   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      11.579   4.625   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      12.913   3.855   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      -0.424   2.315   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0      -7.605   0.761   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0     -17.327 -15.736   0.000  0.00  0.00           C+0
CONECT    1    2    5                                                       
CONECT    2    1    3   45                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    7                                                  
CONECT    5    4    1    6                                                  
CONECT    6    5                                                            
CONECT    7    4    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   21                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20   17                                                       
CONECT   22   20   23   44                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   31                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30   27                                                       
CONECT   32   30   33   43                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41                                                            
CONECT   43   32                                                            
CONECT   44   22                                                            
CONECT   45    2                                                            
MASTER        0    0    0    0    0    0    0    0   45    0   94    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₇H₆₆O₈

Average Mass

638.9270 Da

Monoisotopic Mass

638.47577 Da

IUPAC Name

(5S)-3-[(2R)-9-[(2R,5S)-5-[(1S,4S)-1,4-dihydroxy-4-[(2S,5R)-5-[(1S)-1-hydroxyundecyl]oxolan-2-yl]butyl]oxolan-2-yl]-2-hydroxynonyl]-5-methyl-2,5-dihydrofuran-2-one

Traditional Name

(5S)-3-[(2R)-9-[(2R,5S)-5-[(1S,4S)-1,4-dihydroxy-4-[(2S,5R)-5-[(1S)-1-hydroxyundecyl]oxolan-2-yl]butyl]oxolan-2-yl]-2-hydroxynonyl]-5-methyl-5H-furan-2-one

CAS Registry Number

Not Available

SMILES

CCCCCCCCCC[C@H](O)[C@H]1CC[C@H](O1)[C@@H](O)CC[C@H](O)[C@@H]1CC[C@@H](CCCCCCC[C@@H](O)CC2=C[C@H](C)OC2=O)O1

InChI Identifier

InChI=1S/C37H66O8/c1-3-4-5-6-7-8-12-15-18-31(39)35-23-24-36(45-35)33(41)21-20-32(40)34-22-19-30(44-34)17-14-11-9-10-13-16-29(38)26-28-25-27(2)43-37(28)42/h25,27,29-36,38-41H,3-24,26H2,1-2H3/t27-,29+,30+,31-,32-,33-,34-,35+,36-/m0/s1

InChI Key

HKMBLJVHVBJAIH-CGFIXGQLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Annona purpurea	Plant	KNApSAcK
Rollinia mucosa	Plant	KNApSAcK
Rollinia sylvatica	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Annonaceous acetogenins

Alternative Parents

Substituents

Annonaceae acetogenin skeleton
2-furanone
Dihydrofuran
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Oxolane
Carboxylic acid ester
Lactone
Secondary alcohol
Carboxylic acid derivative
Dialkyl ether
Oxacycle
Ether
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Carbonyl group
Alcohol
Organooxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.83	ALOGPS
logP	7.3	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	13.26	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	125.68 Å²	ChemAxon
Rotatable Bond Count	25	ChemAxon
Refractivity	178.07 m³·mol⁻¹	ChemAxon
Polarizability	78.22 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00044333

Chemspider ID

8547369

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10371924

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Stefko D, Kusz N, Szemeredi N, Barta A, Spengler G, Berkecz R, Hohmann J, Vasas A: Unique Phenanthrenes from Juncus ensifolius and Their Antiproliferative and Synergistic Effects with the Conventional Anticancer Agent Doxorubicin against Human Cancer Cell Lines. Pharmaceutics. 2022 Mar 10;14(3). pii: pharmaceutics14030608. doi: 10.3390/pharmaceutics14030608. [PubMed:35335985 ]
Terezan AP, Junqueira JGM, Wakui VG, Kato L, Oliveira CMA, Martins CHG, Santiago MB, Severino VGP: Qualitative analysis of the acetogenins from Annona coriacea (Annonaceae) leaves by HPLC-Q-Orbitrap and their antibacterial potential against oral pathogens. Nat Prod Res. 2022 Feb;36(3):765-771. doi: 10.1080/14786419.2020.1803312. Epub 2020 Aug 10. [PubMed:32772561 ]
Tolosa D, Alvarez CO, Bardon A, Neske A: Insecticidal effects of acetogenins from Rollinia occidentalis seed extract. Nat Prod Commun. 2012 Dec;7(12):1645-6. [PubMed:23413573 ]
Spurr IB, Brown RC: Total synthesis of annonaceous acetogenins belonging to the non-adjacent bis-THF and non-adjacent THF-THP sub-classes. Molecules. 2010 Jan 21;15(1):460-501. doi: 10.3390/molecules15010460. [PubMed:20110904 ]
Donohoe TJ, Harris RM, Williams O, Hargaden GC, Burrows J, Parker J: Concise syntheses of the natural products (+)-sylvaticin and (+)-cis-sylvaticin. J Am Chem Soc. 2009 Sep 9;131(35):12854-61. doi: 10.1021/ja9049959. [PubMed:19673528 ]

Showing NP-Card for (+)-Sylvaticin (NP0079639)

MOL for NP0079639 ((+)-Sylvaticin)

3D MOL for NP0079639 ((+)-Sylvaticin)

3D SDF for NP0079639 ((+)-Sylvaticin)

3D-SDF for NP0079639 ((+)-Sylvaticin)

PDB for NP0079639 ((+)-Sylvaticin)

3D PDB for NP0079639 ((+)-Sylvaticin)

SMILES for NP0079639 ((+)-Sylvaticin)

INCHI for NP0079639 ((+)-Sylvaticin)

Structure for NP0079639 ((+)-Sylvaticin)

3D Structure for NP0079639 ((+)-Sylvaticin)