NP-MRD: Showing NP-Card for Scutegalin D (NP0078743)

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Record Information

Version

2.0

Created at

2022-04-28 23:48:50 UTC

Updated at

2022-04-28 23:48:50 UTC

NP-MRD ID

NP0078743

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Scutegalin D

Description

(1'S,2S,2'R,4'S,5'R,6'R,8'S,11'S)-2'-(acetyloxy)-5'-{2-[(2R,3R)-2-hydroxyoxolan-3-yl]ethyl}-4',5'-dimethyl-12'-oxaspiro[oxirane-2,10'-tricyclo[6.2.2.0¹,⁶]Dodecane]-11'-yl (2E)-2-methylbut-2-enoate belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid. Scutegalin D is found in Scutellaria columnae var. columnae. Based on a literature review very few articles have been published on (1'S,2S,2'R,4'S,5'R,6'R,8'S,11'S)-2'-(acetyloxy)-5'-{2-[(2R,3R)-2-hydroxyoxolan-3-yl]ethyl}-4',5'-dimethyl-12'-oxaspiro[oxirane-2,10'-tricyclo[6.2.2.0¹,⁶]Dodecane]-11'-yl (2E)-2-methylbut-2-enoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292201482D          

 35 39  0  0  1  0            999 V2000
    3.3227    2.0932    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5009    1.5778    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652304292201482D          

 35 39  0  0  1  0            999 V2000
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 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  9 16  1  6  0  0  0
  8 17  1  1  0  0  0
 17 18  1  0  0  0  0
 19 18  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 19 23  1  0  0  0  0
 20 24  1  6  0  0  0
  8 25  1  6  0  0  0
  5 26  1  6  0  0  0
  1 26  1  0  0  0  0
  3 27  1  0  0  0  0
 27 28  1  0  0  0  0
  3 28  1  6  0  0  0
  1 29  1  1  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 32 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0078743

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C(/C)C(=O)O[C@@H]1O[C@H]2C[C@@H]3[C@](C)(CC[C@@H]4CCO[C@H]4O)[C@@H](C)C[C@@H](OC(C)=O)[C@@]13[C@]1(CO1)C2

> <INCHI_IDENTIFIER>
InChI=1S/C27H40O8/c1-6-15(2)22(29)35-24-27-20(12-19(34-24)13-26(27)14-32-26)25(5,9-7-18-8-10-31-23(18)30)16(3)11-21(27)33-17(4)28/h6,16,18-21,23-24,30H,7-14H2,1-5H3/b15-6+/t16-,18+,19-,20+,21+,23+,24-,25+,26+,27+/m0/s1

> <INCHI_KEY>
RCMIEMHQDSMCOM-XZKUZESYSA-N

> <FORMULA>
C27H40O8

> <MOLECULAR_WEIGHT>
492.609

> <EXACT_MASS>
492.272318248

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
52.56915978182417

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1'S,2S,2'R,4'S,5'R,6'R,8'S,11'S)-2'-(acetyloxy)-5'-{2-[(2R,3R)-2-hydroxyoxolan-3-yl]ethyl}-4',5'-dimethyl-12'-oxaspiro[oxirane-2,10'-tricyclo[6.2.2.0^{1,6}]dodecane]-11'-yl (2E)-2-methylbut-2-enoate

> <ALOGPS_LOGP>
3.04

> <JCHEM_LOGP>
3.4390199193333326

> <ALOGPS_LOGS>
-4.97

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.186317074025167

> <JCHEM_PKA_STRONGEST_BASIC>
-3.810104522018093

> <JCHEM_POLAR_SURFACE_AREA>
103.82000000000002

> <JCHEM_REFRACTIVITY>
126.06289999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.32e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'S,2S,2'R,4'S,5'R,6'R,8'S,11'S)-2'-(acetyloxy)-5'-{2-[(2R,3R)-2-hydroxyoxolan-3-yl]ethyl}-4',5'-dimethyl-12'-oxaspiro[oxirane-2,10'-tricyclo[6.2.2.0^{1,6}]dodecane]-11'-yl (2E)-2-methylbut-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       6.202   3.907   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.668   2.945   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.087   2.796   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.196   4.279   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.248   5.864   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.771   5.288   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.231   3.743   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.732   3.118   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.542   1.560   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.725   0.532   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.051   1.401   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       4.668  -0.206   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       4.314  -1.762   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       5.444  -2.809   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.843  -2.217   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.181   0.593   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.875   4.637   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.689   5.165   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.845   4.148   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.702   2.614   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -3.116   2.004   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -4.133   3.161   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -3.347   4.485   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -0.377   1.829   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.109   2.923   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.731   5.374   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       7.710   2.457   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       6.732   1.398   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       7.972   3.686   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       9.134   4.807   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      10.614   4.381   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       8.763   6.301   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       9.872   7.370   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.500   8.865   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       7.283   6.727   0.000  0.00  0.00           C+0
CONECT    1    2   26   29                                                  
CONECT    2    1    3    7   11                                             
CONECT    3    2    4   27   28                                             
CONECT    4    3    5                                                       
CONECT    5    4    6   26                                                  
CONECT    6    5    7                                                       
CONECT    7    6    2    8                                                  
CONECT    8    7    9   17   25                                             
CONECT    9    8   10   16                                                  
CONECT   10    9   11                                                       
CONECT   11   10    2   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16    9                                                            
CONECT   17    8   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   23                                                  
CONECT   20   19   21   24                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   19                                                       
CONECT   24   20                                                            
CONECT   25    8                                                            
CONECT   26    5    1                                                       
CONECT   27    3   28                                                       
CONECT   28   27    3                                                       
CONECT   29    1   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   35                                                  
CONECT   33   32   34                                                       
CONECT   34   33                                                            
CONECT   35   32                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   78    0
END

View in JSmol

Synonyms

Value	Source
(1's,2S,2'r,4's,5'r,6'r,8's,11's)-2'-(Acetyloxy)-5'-{2-[(2R,3R)-2-hydroxyoxolan-3-yl]ethyl}-4',5'-dimethyl-12'-oxaspiro[oxirane-2,10'-tricyclo[6.2.2.0,]dodecane]-11'-yl (2E)-2-methylbut-2-enoic acid	Generator

Chemical Formula

C₂₇H₄₀O₈

Average Mass

492.6090 Da

Monoisotopic Mass

492.27232 Da

IUPAC Name

(1'S,2S,2'R,4'S,5'R,6'R,8'S,11'S)-2'-(acetyloxy)-5'-{2-[(2R,3R)-2-hydroxyoxolan-3-yl]ethyl}-4',5'-dimethyl-12'-oxaspiro[oxirane-2,10'-tricyclo[6.2.2.0^{1,6}]dodecane]-11'-yl (2E)-2-methylbut-2-enoate

Traditional Name

(1'S,2S,2'R,4'S,5'R,6'R,8'S,11'S)-2'-(acetyloxy)-5'-{2-[(2R,3R)-2-hydroxyoxolan-3-yl]ethyl}-4',5'-dimethyl-12'-oxaspiro[oxirane-2,10'-tricyclo[6.2.2.0^{1,6}]dodecane]-11'-yl (2E)-2-methylbut-2-enoate

CAS Registry Number

Not Available

SMILES

C\C=C(/C)C(=O)O[C@@H]1O[C@H]2C[C@@H]3[C@](C)(CC[C@@H]4CCO[C@H]4O)[C@@H](C)C[C@@H](OC(C)=O)[C@@]13[C@]1(CO1)C2

InChI Identifier

InChI=1S/C27H40O8/c1-6-15(2)22(29)35-24-27-20(12-19(34-24)13-26(27)14-32-26)25(5,9-7-18-8-10-31-23(18)30)16(3)11-21(27)33-17(4)28/h6,16,18-21,23-24,30H,7-14H2,1-5H3/b15-6+/t16-,18+,19-,20+,21+,23+,24-,25+,26+,27+/m0/s1

InChI Key

RCMIEMHQDSMCOM-XZKUZESYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Scutellaria columnae var. columnae	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acid esters

Direct Parent

Fatty acid esters

Alternative Parents

Substituents

Fatty acid ester
Oxane
Dicarboxylic acid or derivatives
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Hemiacetal
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.04	ALOGPS
logP	3.44	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	12.19	ChemAxon
pKa (Strongest Basic)	-3.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	103.82 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	126.06 m³·mol⁻¹	ChemAxon
Polarizability	52.57 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163036552

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Scutegalin D (NP0078743)

MOL for NP0078743 (Scutegalin D)

3D MOL for NP0078743 (Scutegalin D)

3D SDF for NP0078743 (Scutegalin D)

3D-SDF for NP0078743 (Scutegalin D)

PDB for NP0078743 (Scutegalin D)

3D PDB for NP0078743 (Scutegalin D)

SMILES for NP0078743 (Scutegalin D)

INCHI for NP0078743 (Scutegalin D)

Structure for NP0078743 (Scutegalin D)

3D Structure for NP0078743 (Scutegalin D)