NP-MRD: Showing NP-Card for (-)-7beta-Hydroxycatuabine H (NP0078256)

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Record Information

Version

2.0

Created at

2022-04-28 23:21:21 UTC

Updated at

2022-04-28 23:21:21 UTC

NP-MRD ID

NP0078256

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-7beta-Hydroxycatuabine H

Description

(1S,3R,5R,6S,7R)-3,7-dihydroxy-8-methyl-8-azabicyclo[3.2.1]Octan-6-yl 1-methyl-1H-pyrrole-2-carboxylate belongs to the class of organic compounds known as tropane alkaloids. These are organic compounds containing the nitrogenous bicyclic alkaloid parent N-Methyl-8-azabicyclo[3.2.1]Octane. (-)-7beta-Hydroxycatuabine H is found in Erythroxylum vacciniifolium. Based on a literature review very few articles have been published on (1S,3R,5R,6S,7R)-3,7-dihydroxy-8-methyl-8-azabicyclo[3.2.1]Octan-6-yl 1-methyl-1H-pyrrole-2-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 40 42  0  0  0  0  0  0  0  0999 V2000
   -3.8199   -0.8947    0.6533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6384   -1.0336   -0.1012 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5664   -0.2741   -1.3121 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0009    1.1336   -1.0014 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2637    1.7543    0.1326 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2186    2.4410    0.9214 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4391    0.8440    0.9461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4371   -0.5831    0.5951 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4297   -0.9404   -0.5015 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8537   -0.5285   -0.2219 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8850   -1.4488   -0.1384 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5780   -2.6574   -0.3305 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2600   -1.0968    0.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2951   -1.9970    0.2375 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4736   -1.3255    0.5273 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1073    0.0085    0.6113 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7789    0.1166    0.3822 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0824    1.3782    0.3981 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0770   -0.2896   -1.6816 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6117    1.0035   -1.9151 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0544   -1.8973    1.1200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6777   -0.7044   -0.0331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7770   -0.1890    1.4995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1790   -0.6545   -2.1313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1041    1.0912   -0.8131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9047    1.7249   -1.9533 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6347    2.5878   -0.3004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1488    2.1028    1.8418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3707    1.2075    0.9563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7595    0.9423    2.0247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3266   -1.2068    1.4841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5356   -2.0525   -0.6461 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2707   -3.0894    0.1098 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4457   -1.7323    0.6579 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8041    0.8056    0.8278 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5544    2.0331    1.1615 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1357    1.8782   -0.5823 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0155    1.2959    0.6628 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9023   -0.8670   -2.6133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3376    1.1135   -1.6259 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
  9 19  1  0
 19 20  1  0
  8  2  1  0
 17 13  1  0
 19  3  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  6
  4 25  1  0
  4 26  1  0
  5 27  1  6
  6 28  1  0
  7 29  1  0
  7 30  1  0
  8 31  1  1
  9 32  1  6
 14 33  1  0
 15 34  1  0
 16 35  1  0
 18 36  1  0
 18 37  1  0
 18 38  1  0
 19 39  1  6
 20 40  1  0
M  END


  Mrv1652304292201212D          

 20 22  0  0  1  0            999 V2000
    0.1593    0.4941    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1593   -0.3309    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8044   -0.8453    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6087   -0.6617    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9666    0.0816    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6087    0.8249    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8044    1.0085    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0361    0.0816    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8207    0.3366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7916    0.0816    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5840   -0.6888    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5840    0.8521    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6456    1.6748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3889    2.0327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0360    2.1395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8127    1.8612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3174    2.5138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8526    3.1955    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0607    2.9641    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5919    3.4688    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  6  0  0  0
  3  8  1  6  0  0  0
  8  9  1  0  0  0  0
  5 10  1  6  0  0  0
  2 11  1  1  0  0  0
  1 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 15 19  1  0  0  0  0
 19 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0078256

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN1[C@H]2C[C@@H](O)C[C@@H]1[C@H](OC(=O)C1=CC=CN1C)[C@@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C14H20N2O4/c1-15-5-3-4-9(15)14(19)20-13-11-7-8(17)6-10(12(13)18)16(11)2/h3-5,8,10-13,17-18H,6-7H2,1-2H3/t8-,10+,11-,12-,13+/m1/s1

> <INCHI_KEY>
LWRZOADKYLBJOI-GIVNFFOOSA-N

> <FORMULA>
C14H20N2O4

> <MOLECULAR_WEIGHT>
280.324

> <EXACT_MASS>
280.142307132

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
28.80664562722086

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,3R,5R,6S,7R)-3,7-dihydroxy-8-methyl-8-azabicyclo[3.2.1]octan-6-yl 1-methyl-1H-pyrrole-2-carboxylate

> <ALOGPS_LOGP>
0.06

> <JCHEM_LOGP>
-0.08557047833333419

> <ALOGPS_LOGS>
-1.34

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
15.167642650400161

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.51526757354467

> <JCHEM_PKA_STRONGEST_BASIC>
7.429010536576514

> <JCHEM_POLAR_SURFACE_AREA>
74.93

> <JCHEM_REFRACTIVITY>
72.3638

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.27e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3R,5R,6S,7R)-3,7-dihydroxy-8-methyl-8-azabicyclo[3.2.1]octan-6-yl 1-methylpyrrole-2-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       0.297   0.922   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.297  -0.618   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.501  -1.578   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.003  -1.235   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.671   0.152   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.003   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.501   1.883   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       1.934   0.152   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       3.399   0.628   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       5.211   0.152   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      -1.090  -1.286   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -1.090   1.591   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.205   3.126   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -2.593   3.794   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.067   3.994   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.517   3.474   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.459   4.693   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.592   5.965   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0       0.113   5.533   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0      -1.105   6.475   0.000  0.00  0.00           C+0
CONECT    1    2    7   12                                                  
CONECT    2    1    3   11                                                  
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6    1    8                                                  
CONECT    8    7    3    9                                                  
CONECT    9    8                                                            
CONECT   10    5                                                            
CONECT   11    2                                                            
CONECT   12    1   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   19                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   15   20                                                  
CONECT   20   19                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

View in JSmol

Synonyms

Value	Source
(1S,3R,5R,6S,7R)-3,7-Dihydroxy-8-methyl-8-azabicyclo[3.2.1]octan-6-yl 1-methyl-1H-pyrrole-2-carboxylic acid	Generator

Chemical Formula

C₁₄H₂₀N₂O₄

Average Mass

280.3240 Da

Monoisotopic Mass

280.14231 Da

IUPAC Name

(1S,3R,5R,6S,7R)-3,7-dihydroxy-8-methyl-8-azabicyclo[3.2.1]octan-6-yl 1-methyl-1H-pyrrole-2-carboxylate

Traditional Name

(1S,3R,5R,6S,7R)-3,7-dihydroxy-8-methyl-8-azabicyclo[3.2.1]octan-6-yl 1-methylpyrrole-2-carboxylate

CAS Registry Number

Not Available

SMILES

CN1[C@H]2C[C@@H](O)C[C@@H]1[C@H](OC(=O)C1=CC=CN1C)[C@@H]2O

InChI Identifier

InChI=1S/C14H20N2O4/c1-15-5-3-4-9(15)14(19)20-13-11-7-8(17)6-10(12(13)18)16(11)2/h3-5,8,10-13,17-18H,6-7H2,1-2H3/t8-,10+,11-,12-,13+/m1/s1

InChI Key

LWRZOADKYLBJOI-GIVNFFOOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Erythroxylum vacciniifolium	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tropane alkaloids. These are organic compounds containing the nitrogenous bicyclic alkaloid parent N-Methyl-8-azabicyclo[3.2.1]Octane.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Tropane alkaloids

Sub Class

Not Available

Direct Parent

Tropane alkaloids

Alternative Parents

Substituents

Tropane alkaloid
Pyrrole-2-carboxylic acid or derivatives
N-alkylpyrrolidine
Substituted pyrrole
Piperidine
N-methylpyrrole
Heteroaromatic compound
Pyrrolidine
Pyrrole
Cyclic alcohol
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Carboxylic acid ester
Amino acid or derivatives
1,2-aminoalcohol
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Amine
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.06	ALOGPS
logP	-0.086	ChemAxon
logS	-1.3	ALOGPS
pKa (Strongest Acidic)	13.52	ChemAxon
pKa (Strongest Basic)	7.43	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	74.93 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	72.36 m³·mol⁻¹	ChemAxon
Polarizability	28.81 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162920426

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-7beta-Hydroxycatuabine H (NP0078256)

MOL for NP0078256 ((-)-7beta-Hydroxycatuabine H)

3D MOL for NP0078256 ((-)-7beta-Hydroxycatuabine H)

3D SDF for NP0078256 ((-)-7beta-Hydroxycatuabine H)

3D-SDF for NP0078256 ((-)-7beta-Hydroxycatuabine H)

PDB for NP0078256 ((-)-7beta-Hydroxycatuabine H)

3D PDB for NP0078256 ((-)-7beta-Hydroxycatuabine H)

SMILES for NP0078256 ((-)-7beta-Hydroxycatuabine H)

INCHI for NP0078256 ((-)-7beta-Hydroxycatuabine H)

Structure for NP0078256 ((-)-7beta-Hydroxycatuabine H)

3D Structure for NP0078256 ((-)-7beta-Hydroxycatuabine H)