NP-MRD: Showing NP-Card for (5alpha,25R)-Spirostan-3,6,12-trione (NP0078143)

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Record Information

Version

2.0

Created at

2022-04-28 23:16:16 UTC

Updated at

2022-04-28 23:16:16 UTC

NP-MRD ID

NP0078143

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5alpha,25R)-Spirostan-3,6,12-trione

Description

(25R)-5alpha-Spirostane-3,6,12-trione belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (5alpha,25R)-Spirostan-3,6,12-trione is found in Tribulus terrestris . Based on a literature review very few articles have been published on (25R)-5alpha-Spirostane-3,6,12-trione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292201162D          

 32 37  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652304292201162D          

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M  END
> <DATABASE_ID>
NP0078143

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2[C@H](C[C@H]3[C@@H]4CC(=O)[C@H]5CC(=O)CC[C@]5(C)[C@H]4CC(=O)[C@]23C)O[C@]11CC[C@@H](C)CO1

> <INCHI_IDENTIFIER>
InChI=1S/C27H38O5/c1-14-5-8-27(31-13-14)15(2)24-22(32-27)11-19-17-10-21(29)20-9-16(28)6-7-25(20,3)18(17)12-23(30)26(19,24)4/h14-15,17-20,22,24H,5-13H2,1-4H3/t14-,15+,17-,18+,19+,20-,22+,24+,25-,26-,27-/m1/s1

> <INCHI_KEY>
YHZNLGZQCYHIDM-VTALKGSISA-N

> <FORMULA>
C27H38O5

> <MOLECULAR_WEIGHT>
442.596

> <EXACT_MASS>
442.271924324

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
50.70431241672571

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1'R,2R,2'S,4'S,5R,7'S,8'R,9'S,12'S,13'R,18'S)-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane]-10',16',19'-trione

> <ALOGPS_LOGP>
3.05

> <JCHEM_LOGP>
3.949851832333334

> <ALOGPS_LOGS>
-5.28

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.995813536291063

> <JCHEM_PKA_STRONGEST_ACIDIC>
17.762158072018554

> <JCHEM_PKA_STRONGEST_BASIC>
-4.049143002138204

> <JCHEM_POLAR_SURFACE_AREA>
69.67

> <JCHEM_REFRACTIVITY>
119.74829999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.32e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,2R,2'S,4'S,5R,7'S,8'R,9'S,12'S,13'R,18'S)-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane]-10',16',19'-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       5.100  -0.785   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.408   0.591   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.255   1.878   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.792   1.788   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.483   0.412   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.637  -0.875   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       7.328  -2.251   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       9.006   0.644   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.255   2.164   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.887   2.871   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      10.778   2.396   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      11.469   1.020   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.374  -0.063   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.606  -1.585   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      12.445   2.211   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      13.965   1.961   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.508   0.520   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.532  -0.671   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.013  -0.421   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      16.028   0.271   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.315  -0.884   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.563   3.254   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.026   3.343   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.335   4.720   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       2.180   2.057   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.871   0.681   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.025  -0.606   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.487  -0.517   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -0.204   0.859   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -1.741   0.949   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       0.642   2.146   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.562  -0.696   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   26                                                  
CONECT    3    2    4   22                                                  
CONECT    4    3    5   10                                                  
CONECT    5    4    6    8   21                                             
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5    9   13                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9    4                                                       
CONECT   11    9   12                                                       
CONECT   12   11   13   15   19                                             
CONECT   13   12    8   14                                                  
CONECT   14   13                                                            
CONECT   15   12   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   20                                                  
CONECT   18   17   19                                                       
CONECT   19   18   12                                                       
CONECT   20   17                                                            
CONECT   21    5                                                            
CONECT   22    3   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   31                                                  
CONECT   26   25    2   27   32                                             
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   25                                                       
CONECT   32   26                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   74    0
END

View in JSmol

Synonyms

Value	Source
(25R)-5a-Spirostane-3,6,12-trione	Generator
(25R)-5Α-spirostane-3,6,12-trione	Generator

Chemical Formula

C₂₇H₃₈O₅

Average Mass

442.5960 Da

Monoisotopic Mass

442.27192 Da

IUPAC Name

(1'R,2R,2'S,4'S,5R,7'S,8'R,9'S,12'S,13'R,18'S)-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane]-10',16',19'-trione

Traditional Name

(1'R,2R,2'S,4'S,5R,7'S,8'R,9'S,12'S,13'R,18'S)-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane]-10',16',19'-trione

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](C[C@H]3[C@@H]4CC(=O)[C@H]5CC(=O)CC[C@]5(C)[C@H]4CC(=O)[C@]23C)O[C@]11CC[C@@H](C)CO1

InChI Identifier

InChI=1S/C27H38O5/c1-14-5-8-27(31-13-14)15(2)24-22(32-27)11-19-17-10-21(29)20-9-16(28)6-7-25(20,3)18(17)12-23(30)26(19,24)4/h14-15,17-20,22,24H,5-13H2,1-4H3/t14-,15+,17-,18+,19+,20-,22+,24+,25-,26-,27-/m1/s1

InChI Key

YHZNLGZQCYHIDM-VTALKGSISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Tribulus terrestris	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Spirostane skeleton
3-oxosteroid
12-oxosteroid
Oxosteroid
6-oxosteroid
3-oxo-5-alpha-steroid
Steroid
Ketal
Oxane
Tetrahydrofuran
Ketone
Cyclic ketone
Acetal
Oxacycle
Organoheterocyclic compound
Organooxygen compound
Organic oxide
Carbonyl group
Hydrocarbon derivative
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.05	ALOGPS
logP	3.95	ChemAxon
logS	-5.3	ALOGPS
pKa (Strongest Acidic)	17.76	ChemAxon
pKa (Strongest Basic)	-4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	69.67 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	119.75 m³·mol⁻¹	ChemAxon
Polarizability	50.7 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102438530

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (5alpha,25R)-Spirostan-3,6,12-trione (NP0078143)

MOL for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

3D MOL for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

3D SDF for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

3D-SDF for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

PDB for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

3D PDB for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

SMILES for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

INCHI for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

Structure for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)

3D Structure for NP0078143 ((5alpha,25R)-Spirostan-3,6,12-trione)