NP-MRD: Showing NP-Card for (-)-Neosibiricoside B (NP0078023)

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Record Information

Version

1.0

Created at

2022-04-28 23:09:49 UTC

Updated at

2022-04-28 23:09:49 UTC

NP-MRD ID

NP0078023

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Neosibiricoside B

Description

(1'S,2R,2'S,4'S,5S,7'S,8'R,9'S,12'S,13'R,14'R,16'R)-16'-{[(2R,3R,4S,5R,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]Icosan]-18'-en-14'-yl acetate belongs to the class of organic compounds known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative. (-)-Neosibiricoside B is found in Polygonatum sibiricum . It was first documented in 2022 (PMID: 35501128). Based on a literature review a significant number of articles have been published on (1'S,2R,2'S,4'S,5S,7'S,8'R,9'S,12'S,13'R,14'R,16'R)-16'-{[(2R,3R,4S,5R,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]Icosan]-18'-en-14'-yl acetate (PMID: 35501127) (PMID: 35501126) (PMID: 35501125) (PMID: 35501124).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292201092D          

 76 85  0  0  1  0            999 V2000
    6.1441    0.5463    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5574   -0.0337    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    4.9582    1.1592    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7738    1.2835    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2253    1.5379    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6386    0.9580    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0089    0.2207    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5556   -0.4686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  9 10  1  0  0  0  0
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M  END

     RDKit          3D

158167  0  0  0  0  0  0  0  0999 V2000
    1.2751   -1.5702    3.3661 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1777   -0.5810    2.6829 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0818    1.8614    0.3137 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.7480    1.1397    3.6665 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4620   -0.1316    4.4489 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.4029   -3.0765   -2.5678 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.5698   -4.4245   -2.9467 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7162   -2.5696   -2.0614 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.5518   -2.2918   -3.1484 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6456   -1.3935   -1.1524 C   0  0  1  0  0  0  0  0  0  0  0  0
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    4.1102    1.4676   -2.3554 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5619    1.5366   -2.0980 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9857    0.2710   -1.3995 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.3965    0.4527   -0.9267 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.4348    0.6375   -1.9629 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7122    0.5091   -1.1190 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.6965   -0.1604   -1.8021 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4689   -0.8188   -0.8063 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.3183   -1.8056   -1.4987 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5780   -2.1865   -0.8140 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2555   -0.9430   -0.3024 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.4636   -1.2628    0.5494 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304292201092D          

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    1.0017   -1.7513    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1781   -1.7033    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3720   -2.4885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9084   -0.3727    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4542   -0.4738    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6817   -0.8493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6670    1.1844    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4811    1.0506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7723    0.2787    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2494   -0.3594    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4353   -0.2256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5863    0.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  1  5  1  6  0  0  0
  4  6  1  0  0  0  0
  7  6  1  6  0  0  0
  7  8  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11 10  1  6  0  0  0
 11 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 15 20  1  0  0  0  0
 19 21  1  6  0  0  0
 22 21  1  1  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 22 27  1  0  0  0  0
 27 28  1  6  0  0  0
 26 29  1  6  0  0  0
 25 30  1  1  0  0  0
 31 30  1  6  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 31 36  1  0  0  0  0
 35 37  1  6  0  0  0
 37 38  1  0  0  0  0
 34 39  1  1  0  0  0
 33 40  1  6  0  0  0
 41 40  1  6  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 41 46  1  0  0  0  0
 44 47  1  1  0  0  0
 43 48  1  6  0  0  0
 42 49  1  1  0  0  0
 32 50  1  1  0  0  0
 51 50  1  1  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 51 56  1  0  0  0  0
 56 57  1  6  0  0  0
 55 58  1  1  0  0  0
 54 59  1  6  0  0  0
 53 60  1  1  0  0  0
 60 61  1  0  0  0  0
 24 62  1  1  0  0  0
 62 63  1  0  0  0  0
 17 64  1  6  0  0  0
 64 65  1  0  0  0  0
 65 66  2  0  0  0  0
 65 67  1  0  0  0  0
 16 68  1  6  0  0  0
  8 69  1  6  0  0  0
  2 70  1  1  0  0  0
  1 71  1  0  0  0  0
 71 72  1  0  0  0  0
 72 73  1  0  0  0  0
 73 74  1  0  0  0  0
 74 75  1  0  0  0  0
  1 75  1  0  0  0  0
 73 76  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0078023

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2[C@H](C[C@H]3[C@@H]4CC=C5C[C@H](C[C@@H](OC(C)=O)[C@]5(C)[C@H]4CC[C@]23C)O[C@@H]2O[C@H](CO)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4OC[C@@H](O)[C@H](O)[C@H]4O)[C@H]3O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H]2O)O[C@]11CC[C@H](C)CO1

> <INCHI_IDENTIFIER>
InChI=1S/C52H82O24/c1-20-8-11-52(67-18-20)21(2)34-29(76-52)14-27-25-7-6-23-12-24(13-33(68-22(3)56)51(23,5)26(25)9-10-50(27,34)4)69-47-42(65)39(62)43(32(17-55)72-47)73-49-45(75-48-41(64)38(61)36(59)30(15-53)70-48)44(37(60)31(16-54)71-49)74-46-40(63)35(58)28(57)19-66-46/h6,20-21,24-49,53-55,57-65H,7-19H2,1-5H3/t20-,21-,24+,25+,26-,27-,28+,29-,30+,31+,32+,33+,34-,35-,36+,37+,38-,39-,40+,41+,42+,43-,44-,45+,46-,47+,48-,49-,50-,51-,52+/m0/s1

> <INCHI_KEY>
NNFPCHSMSQYLNS-PPGFOCSFSA-N

> <FORMULA>
C52H82O24

> <MOLECULAR_WEIGHT>
1091.204

> <EXACT_MASS>
1090.51960352

> <JCHEM_ACCEPTOR_COUNT>
23

> <JCHEM_ATOM_COUNT>
158

> <JCHEM_AVERAGE_POLARIZABILITY>
114.78789408154132

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
12

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1'S,2R,2'S,4'S,5S,7'S,8'R,9'S,12'S,13'R,14'R,16'R)-16'-{[(2R,3R,4S,5R,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan]-18'-en-14'-yl acetate

> <ALOGPS_LOGP>
-0.13

> <JCHEM_LOGP>
-2.3881818493333338

> <ALOGPS_LOGS>
-2.76

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
10

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.193983803174198

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.75544541656276

> <JCHEM_PKA_STRONGEST_BASIC>
-3.648377595760352

> <JCHEM_POLAR_SURFACE_AREA>
361.36

> <JCHEM_REFRACTIVITY>
254.5800000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.91e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'S,2R,2'S,4'S,5S,7'S,8'R,9'S,12'S,13'R,14'R,16'R)-16'-{[(2R,3R,4S,5R,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan]-18'-en-14'-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      11.469   1.020   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.374  -0.063   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.006   0.644   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.255   2.164   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      10.778   2.396   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       7.887   2.871   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.792   1.788   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.483   0.412   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.637  -0.875   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.100  -0.785   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.408   0.591   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.255   1.878   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.563   3.254   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.026   3.343   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.180   2.057   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.871   0.681   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.025  -0.606   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.487  -0.517   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.204   0.859   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.642   2.146   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.741   0.949   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -2.432   2.325   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -1.586   3.612   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -2.277   4.988   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -3.815   5.077   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -4.661   3.791   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -3.970   2.415   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -4.816   1.128   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      -6.198   3.880   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      -4.506   6.454   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -6.043   6.543   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -6.735   7.919   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -8.272   8.009   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -9.118   6.722   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -8.427   5.346   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      -6.890   5.256   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -9.273   4.059   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0     -10.810   4.149   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0     -10.655   6.812   0.000  0.00  0.00           O+0
HETATM   40  O   UNK     0      -8.963   9.385   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0     -10.500   9.474   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0     -11.192  10.851   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0     -12.729  10.940   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -13.575   9.653   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0     -12.884   8.277   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0     -11.347   8.188   0.000  0.00  0.00           O+0
HETATM   47  O   UNK     0     -15.113   9.743   0.000  0.00  0.00           O+0
HETATM   48  O   UNK     0     -13.420  12.316   0.000  0.00  0.00           O+0
HETATM   49  O   UNK     0     -10.345  12.137   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0      -5.888   9.206   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      -6.579  10.582   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      -5.733  11.869   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      -6.424  13.245   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      -7.962  13.335   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      -8.808  12.048   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      -8.117  10.672   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0      -9.558  10.128   0.000  0.00  0.00           O+0
HETATM   58  O   UNK     0      -9.999  13.024   0.000  0.00  0.00           O+0
HETATM   59  O   UNK     0      -8.653  14.711   0.000  0.00  0.00           O+0
HETATM   60  C   UNK     0      -5.578  14.532   0.000  0.00  0.00           C+0
HETATM   61  O   UNK     0      -4.041  14.442   0.000  0.00  0.00           O+0
HETATM   62  C   UNK     0      -1.431   6.275   0.000  0.00  0.00           C+0
HETATM   63  O   UNK     0       0.106   6.185   0.000  0.00  0.00           O+0
HETATM   64  O   UNK     0       2.716  -1.982   0.000  0.00  0.00           O+0
HETATM   65  C   UNK     0       1.870  -3.269   0.000  0.00  0.00           C+0
HETATM   66  O   UNK     0       0.332  -3.180   0.000  0.00  0.00           O+0
HETATM   67  C   UNK     0       2.561  -4.645   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0       3.562  -0.696   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0       8.315  -0.884   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0      10.606  -1.585   0.000  0.00  0.00           C+0
HETATM   71  O   UNK     0      12.445   2.211   0.000  0.00  0.00           O+0
HETATM   72  C   UNK     0      13.965   1.961   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0      14.508   0.520   0.000  0.00  0.00           C+0
HETATM   74  C   UNK     0      13.532  -0.671   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0      12.013  -0.421   0.000  0.00  0.00           C+0
HETATM   76  C   UNK     0      16.028   0.271   0.000  0.00  0.00           C+0
CONECT    1    2    5   71   75                                             
CONECT    2    1    3   70                                                  
CONECT    3    2    4    8                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4    1                                                       
CONECT    6    4    7                                                       
CONECT    7    6    8   12                                                  
CONECT    8    7    3    9   69                                             
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11    7   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   11   17   68                                             
CONECT   17   16   18   64                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19   15                                                       
CONECT   21   19   22                                                       
CONECT   22   21   23   27                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   62                                                  
CONECT   25   24   26   30                                                  
CONECT   26   25   27   29                                                  
CONECT   27   26   22   28                                                  
CONECT   28   27                                                            
CONECT   29   26                                                            
CONECT   30   25   31                                                       
CONECT   31   30   32   36                                                  
CONECT   32   31   33   50                                                  
CONECT   33   32   34   40                                                  
CONECT   34   33   35   39                                                  
CONECT   35   34   36   37                                                  
CONECT   36   35   31                                                       
CONECT   37   35   38                                                       
CONECT   38   37                                                            
CONECT   39   34                                                            
CONECT   40   33   41                                                       
CONECT   41   40   42   46                                                  
CONECT   42   41   43   49                                                  
CONECT   43   42   44   48                                                  
CONECT   44   43   45   47                                                  
CONECT   45   44   46                                                       
CONECT   46   45   41                                                       
CONECT   47   44                                                            
CONECT   48   43                                                            
CONECT   49   42                                                            
CONECT   50   32   51                                                       
CONECT   51   50   52   56                                                  
CONECT   52   51   53                                                       
CONECT   53   52   54   60                                                  
CONECT   54   53   55   59                                                  
CONECT   55   54   56   58                                                  
CONECT   56   55   51   57                                                  
CONECT   57   56                                                            
CONECT   58   55                                                            
CONECT   59   54                                                            
CONECT   60   53   61                                                       
CONECT   61   60                                                            
CONECT   62   24   63                                                       
CONECT   63   62                                                            
CONECT   64   17   65                                                       
CONECT   65   64   66   67                                                  
CONECT   66   65                                                            
CONECT   67   65                                                            
CONECT   68   16                                                            
CONECT   69    8                                                            
CONECT   70    2                                                            
CONECT   71    1   72                                                       
CONECT   72   71   73                                                       
CONECT   73   72   74   76                                                  
CONECT   74   73   75                                                       
CONECT   75   74    1                                                       
CONECT   76   73                                                            
MASTER        0    0    0    0    0    0    0    0   76    0  170    0
END

View in JSmol

Synonyms

Value

Source

(1's,2R,2's,4's,5S,7's,8'r,9's,12's,13'r,14'r,16'r)-16'-{[(2R,3R,4S,5R,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0,.0,.0,]icosan]-18'-en-14'-yl acetic acid

Generator

Chemical Formula

C₅₂H₈₂O₂₄

Average Mass

1091.2040 Da

Monoisotopic Mass

1090.51960 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](C[C@H]3[C@@H]4CC=C5C[C@H](C[C@@H](OC(C)=O)[C@]5(C)[C@H]4CC[C@]23C)O[C@@H]2O[C@H](CO)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4OC[C@@H](O)[C@H](O)[C@H]4O)[C@H]3O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H]2O)O[C@]11CC[C@H](C)CO1

InChI Identifier

InChI=1S/C52H82O24/c1-20-8-11-52(67-18-20)21(2)34-29(76-52)14-27-25-7-6-23-12-24(13-33(68-22(3)56)51(23,5)26(25)9-10-50(27,34)4)69-47-42(65)39(62)43(32(17-55)72-47)73-49-45(75-48-41(64)38(61)36(59)30(15-53)70-48)44(37(60)31(16-54)71-49)74-46-40(63)35(58)28(57)19-66-46/h6,20-21,24-49,53-55,57-65H,7-19H2,1-5H3/t20-,21-,24+,25+,26-,27-,28+,29-,30+,31+,32+,33+,34-,35-,36+,37+,38-,39-,40+,41+,42+,43-,44-,45+,46-,47+,48-,49-,50-,51-,52+/m0/s1

InChI Key

NNFPCHSMSQYLNS-PPGFOCSFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Polygonatum sibiricum	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal saponins

Alternative Parents

Substituents

Steroidal saponin
Triterpenoid
Spirostane skeleton
Oligosaccharide
Steroid ester
Delta-5-steroid
O-glycosyl compound
Glycosyl compound
Ketal
Oxane
Tetrahydrofuran
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.13	ALOGPS
logP	-2.4	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	11.76	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	23	ChemAxon
Hydrogen Donor Count	12	ChemAxon
Polar Surface Area	361.36 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	254.58 m³·mol⁻¹	ChemAxon
Polarizability	114.79 Å³	ChemAxon
Number of Rings	10	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162892282

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Booke F, Fauser D, Reims N, Bethge M: Unemployment due to the SARS-CoV-2-pandemic among people with and without severe disabilities: a difference-in-differences analysis. Occup Environ Med. 2022 May 2. pii: oemed-2021-108125. doi: 10.1136/oemed-2021-108125. [PubMed:35501128 ]
Ritonja JA, Aronson KJ, Leung M, Flaten L, Topouza DG, Duan QL, Durocher F, Tranmer JE, Bhatti P: Investigating the relationship between melatonin patterns and methylation in circadian genes among day shift and night shift workers. Occup Environ Med. 2022 May 2. pii: oemed-2021-108111. doi: 10.1136/oemed-2021-108111. [PubMed:35501127 ]
Kelly-Reif K, Bertke SJ, Samet J, Sood A, Schubauer-Berigan MK: Health burdens of uranium miners will extend beyond the radiation exposure compensation act deadline. Occup Environ Med. 2022 May 2. pii: oemed-2022-108311. doi: 10.1136/oemed-2022-108311. [PubMed:35501126 ]
Guseva Canu I, Gaillen-Guedy A, Antilla A, Charles S, Fraize-Frontier S, Luce D, McElvenny DM, Merletti F, Michel C, Pukkala E, Schubauer-Berigan MK, Straif K, Wild P, Richardson DB: Lung cancer mortality in the European cohort of titanium dioxide workers: a reanalysis of the exposure-response relationship. Occup Environ Med. 2022 May 2. pii: oemed-2021-108030. doi: 10.1136/oemed-2021-108030. [PubMed:35501125 ]
Ferrari V, Cristofani R, Cicardi ME, Tedesco B, Crippa V, Chierichetti M, Casarotto E, Cozzi M, Mina F, Galbiati M, Piccolella M, Carra S, Vaccari T, Nalbandian A, Kimonis V, Fortuna TR, Pandey UB, Gagliani MC, Cortese K, Rusmini P, Poletti A: Pathogenic variants of Valosin Containing Protein induce lysosomal damage and transcriptional activation of autophagy regulators in neuronal cells. Neuropathol Appl Neurobiol. 2022 May 2:e12818. doi: 10.1111/nan.12818. [PubMed:35501124 ]

Showing NP-Card for (-)-Neosibiricoside B (NP0078023)

MOL for NP0078023 ((-)-Neosibiricoside B)

3D MOL for NP0078023 ((-)-Neosibiricoside B)

3D SDF for NP0078023 ((-)-Neosibiricoside B)

3D-SDF for NP0078023 ((-)-Neosibiricoside B)

PDB for NP0078023 ((-)-Neosibiricoside B)

3D PDB for NP0078023 ((-)-Neosibiricoside B)

SMILES for NP0078023 ((-)-Neosibiricoside B)

INCHI for NP0078023 ((-)-Neosibiricoside B)

Structure for NP0078023 ((-)-Neosibiricoside B)

3D Structure for NP0078023 ((-)-Neosibiricoside B)