NP-MRD: Showing NP-Card for (+)-Microfokienoxane D (NP0078018)

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Record Information

Version

2.0

Created at

2022-04-28 23:09:33 UTC

Updated at

2022-04-28 23:09:33 UTC

NP-MRD ID

NP0078018

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Microfokienoxane D

Description

(1S,4S,5R,8R,13S,14R,17R,18R,20S)-20-(hydroxymethyl)-4,5,9,9,13,20-hexamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]Tetracos-15-en-10-one belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (+)-Microfokienoxane D is found in Microtropis fokienensis. Based on a literature review very few articles have been published on (1S,4S,5R,8R,13S,14R,17R,18R,20S)-20-(hydroxymethyl)-4,5,9,9,13,20-hexamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]Tetracos-15-en-10-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304292201092D          

 33 38  0  0  1  0            999 V2000
    1.2711   -1.3159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1795   -0.5154    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4765   -0.0836    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2489   -0.4764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2714   -1.3011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4315   -1.7330    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7989   -2.4717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0245   -2.4506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8005   -2.4569    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0124    0.6046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8674    0.5776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2226   -0.2150    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7519   -0.9613    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2429   -1.6581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0773   -1.6454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4777   -0.9192    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0587   -0.2085    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4648    0.5097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2897    0.5172    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7087   -0.1935    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3026   -0.9117    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7216   -1.6224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5466   -1.6149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9526   -0.8968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7775   -0.8893    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5336   -0.1861    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2293    0.2574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5550    0.6387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8966   -1.6299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6402    0.5025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0032   -1.4601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2908   -0.9541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1752    0.6086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  1  0  0  0
  8  9  1  0  0  0  0
  3 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  2 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 16 15  1  1  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 20 19  1  1  0  0  0
 20 21  1  0  0  0  0
 16 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 20 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 21 29  1  1  0  0  0
 17 30  1  1  0  0  0
 13 31  1  6  0  0  0
 31 32  1  0  0  0  0
  3 32  1  1  0  0  0
 12 33  1  6  0  0  0
M  END


  Mrv1652304292201092D          

 33 38  0  0  1  0            999 V2000
    1.2711   -1.3159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1795   -0.5154    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4765   -0.0836    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2489   -0.4764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2714   -1.3011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4315   -1.7330    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7989   -2.4717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0245   -2.4506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8005   -2.4569    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0124    0.6046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8674    0.5776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2226   -0.2150    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7519   -0.9613    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2429   -1.6581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0773   -1.6454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4777   -0.9192    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0587   -0.2085    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4648    0.5097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2897    0.5172    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7087   -0.1935    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3026   -0.9117    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7216   -1.6224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5466   -1.6149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9526   -0.8968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7775   -0.8893    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5336   -0.1861    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2293    0.2574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5550    0.6387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8966   -1.6299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6402    0.5025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0032   -1.4601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2908   -0.9541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1752    0.6086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  1  0  0  0
  8  9  1  0  0  0  0
  3 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  2 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 16 15  1  1  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 20 19  1  1  0  0  0
 20 21  1  0  0  0  0
 16 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 20 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 21 29  1  1  0  0  0
 17 30  1  1  0  0  0
 13 31  1  6  0  0  0
 31 32  1  0  0  0  0
  3 32  1  1  0  0  0
 12 33  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0078018

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]1(CO)CC[C@]23CO[C@]4(C=C[C@@H]5[C@@]6(C)CCC(=O)C(C)(C)[C@@H]6CC[C@@]5(C)[C@]4(C)CC2)[C@@H]3C1

> <INCHI_IDENTIFIER>
InChI=1S/C30H46O3/c1-24(2)20-7-11-27(5)21(26(20,4)10-9-23(24)32)8-12-30-22-17-25(3,18-31)13-15-29(22,19-33-30)16-14-28(27,30)6/h8,12,20-22,31H,7,9-11,13-19H2,1-6H3/t20-,21+,22+,25-,26-,27+,28-,29+,30+/m0/s1

> <INCHI_KEY>
MKFYXIFFFRVTBZ-LQQBYKNUSA-N

> <FORMULA>
C30H46O3

> <MOLECULAR_WEIGHT>
454.695

> <EXACT_MASS>
454.344695341

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
79

> <JCHEM_AVERAGE_POLARIZABILITY>
72.62888269273236

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4S,5R,8R,13S,14R,17R,18R,20S)-20-(hydroxymethyl)-4,5,9,9,13,20-hexamethyl-24-oxahexacyclo[15.5.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tetracos-15-en-10-one

> <ALOGPS_LOGP>
4.95

> <JCHEM_LOGP>
5.6850490486666665

> <ALOGPS_LOGS>
-6.69

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.915882722253386

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.219701032196518

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3898353721958068

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
132.688

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.28e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4S,5R,8R,13S,14R,17R,18R,20S)-20-(hydroxymethyl)-4,5,9,9,13,20-hexamethyl-24-oxahexacyclo[15.5.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tetracos-15-en-10-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       2.373  -2.456   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.202  -0.962   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.889  -0.156   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.465  -0.889   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.507  -2.429   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.806  -3.235   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.491  -4.614   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.046  -4.574   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.494  -4.586   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.890   1.129   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.486   1.078   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.149  -0.401   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.270  -1.794   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.187  -3.095   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.744  -3.071   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.492  -1.716   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.710  -0.389   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.468   0.951   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.007   0.965   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.790  -0.361   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.032  -1.702   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.814  -3.028   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.354  -3.015   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      11.111  -1.674   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      12.651  -1.660   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      10.329  -0.347   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.628   0.481   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.369   1.192   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.274  -3.042   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.928   0.938   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       1.873  -2.726   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       0.543  -1.781   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       4.060   1.136   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   13                                                  
CONECT    3    2    4   10   32                                             
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    1    7    8                                             
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8                                                            
CONECT   10    3   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   17   33                                             
CONECT   13   12    2   14   31                                             
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   12   18   30                                             
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   26                                                  
CONECT   21   20   16   22   29                                             
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   20   27   28                                             
CONECT   27   26                                                            
CONECT   28   26                                                            
CONECT   29   21                                                            
CONECT   30   17                                                            
CONECT   31   13   32                                                       
CONECT   32   31    3                                                       
CONECT   33   12                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₆O₃

Average Mass

454.6950 Da

Monoisotopic Mass

454.34470 Da

IUPAC Name

(1S,4S,5R,8R,13S,14R,17R,18R,20S)-20-(hydroxymethyl)-4,5,9,9,13,20-hexamethyl-24-oxahexacyclo[15.5.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tetracos-15-en-10-one

Traditional Name

(1S,4S,5R,8R,13S,14R,17R,18R,20S)-20-(hydroxymethyl)-4,5,9,9,13,20-hexamethyl-24-oxahexacyclo[15.5.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tetracos-15-en-10-one

CAS Registry Number

Not Available

SMILES

C[C@]1(CO)CC[C@]23CO[C@]4(C=C[C@@H]5[C@@]6(C)CCC(=O)C(C)(C)[C@@H]6CC[C@@]5(C)[C@]4(C)CC2)[C@@H]3C1

InChI Identifier

InChI=1S/C30H46O3/c1-24(2)20-7-11-27(5)21(26(20,4)10-9-23(24)32)8-12-30-22-17-25(3,18-31)13-15-29(22,19-33-30)16-14-28(27,30)6/h8,12,20-22,31H,7,9-11,13-19H2,1-6H3/t20-,21+,22+,25-,26-,27+,28-,29+,30+/m0/s1

InChI Key

MKFYXIFFFRVTBZ-LQQBYKNUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Microtropis fokienensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Oxepane
Tetrahydrofuran
Cyclic ketone
Ketone
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.95	ALOGPS
logP	5.69	ChemAxon
logS	-6.7	ALOGPS
pKa (Strongest Acidic)	18.22	ChemAxon
pKa (Strongest Basic)	-1.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	132.69 m³·mol⁻¹	ChemAxon
Polarizability	72.63 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10167533

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11995066

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Microfokienoxane D (NP0078018)

MOL for NP0078018 ((+)-Microfokienoxane D)

3D MOL for NP0078018 ((+)-Microfokienoxane D)

3D SDF for NP0078018 ((+)-Microfokienoxane D)

3D-SDF for NP0078018 ((+)-Microfokienoxane D)

PDB for NP0078018 ((+)-Microfokienoxane D)

3D PDB for NP0078018 ((+)-Microfokienoxane D)

SMILES for NP0078018 ((+)-Microfokienoxane D)

INCHI for NP0078018 ((+)-Microfokienoxane D)

Structure for NP0078018 ((+)-Microfokienoxane D)

3D Structure for NP0078018 ((+)-Microfokienoxane D)