NP-MRD: Showing NP-Card for (+)-Cimicifugic acid B (NP0077920)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-28 23:04:04 UTC

Updated at

2022-04-28 23:04:04 UTC

NP-MRD ID

NP0077920

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Cimicifugic acid B

Description

Cimicifugic acid B, also known as cimicifugate b, belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring. (+)-Cimicifugic acid B is found in Actaea heracleifolia, Actaea racemosa and Actaea simplex. (+)-Cimicifugic acid B was first documented in 2002 (PMID: 12428954). Based on a literature review a small amount of articles have been published on Cimicifugic acid B (PMID: 16562825) (PMID: 23054712) (PMID: 12717772).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292201042D          

 32 33  0  0  1  0            999 V2000
   -3.7475   -6.2862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1976   -5.5949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8239   -4.8593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0001   -4.8152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5500   -5.5066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9236   -6.2421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4735   -6.9335    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6264   -4.0797    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8026   -4.0355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8791   -2.6086    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6051   -3.2559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2314   -2.5203    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5924   -2.4762    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4162   -2.4320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7899   -1.6965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3397   -1.0051    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7134   -0.2696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5372   -0.2255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9874   -0.9168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6137   -1.6524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8112   -0.8727    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9109    0.5101    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5482   -1.6524    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6365   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3720   -3.6737    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0549   -3.7501    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6816   -1.8290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3079   -1.0934    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5054   -1.8731    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1211   -7.0218    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6710   -7.7131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  4  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 20 22  1  0  0  0  0
 19 23  1  0  0  0  0
 14 24  1  1  0  0  0
 14 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 13 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
  1 31  1  0  0  0  0
 31 32  1  0  0  0  0
M  END

     RDKit          3D

 52 53  0  0  0  0  0  0  0  0999 V2000
    8.7097    0.0937   -1.4822 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7017   -0.8776   -1.6637 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4366   -0.6494   -1.1303 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1677    0.5081   -0.4335 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9079    0.7682    0.1150 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8819   -0.1322   -0.0234 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5598    0.0543    0.5067 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1955    1.1186    1.1858 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8220    1.2308    1.6937 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4458    2.2344    2.3448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0932    0.2323    1.4674 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4467    0.3209    1.9564 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6700   -0.7984    2.8771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7619   -1.6394    3.0762 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8659   -0.9665    3.5494 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3596    0.3589    0.7660 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0238    1.4887   -0.0174 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8172    0.4585    1.1025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6764    0.5035   -0.0954 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9926    1.7050   -0.6703 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8030    1.7818   -1.8016 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2773    0.5854   -2.3222 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0940    0.6425   -3.4601 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9819   -0.6370   -1.7738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4583   -1.8080   -2.3003 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1636   -0.6582   -0.6379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1070   -0.8298   -0.0922 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6896   -0.7395   -1.2701 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3279   -2.1244    0.3866 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1612   -1.3067   -0.7326 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4059   -1.5551   -1.2700 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6455   -2.7292   -1.9659 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.6304   -0.1685   -2.0224 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3679    1.0712   -1.9327 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9037    0.3149   -0.4139 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9481    1.2428   -0.3020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7178    1.6838    0.6588 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7811   -0.7066    0.3609 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8651    1.9253    1.3915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5272    1.2942    2.4949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0677   -0.5962    4.4676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0170    1.5588   -0.0455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0251    1.3674    1.6922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0906   -0.4716    1.6861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6366    2.6620   -0.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0380    2.7439   -2.2366 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3293    1.5275   -3.8868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2789   -2.7196   -1.9480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9553   -1.6401   -0.2361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5547   -2.7217    0.6234 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3545   -2.0388   -0.8541 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5205   -2.9629   -2.3748 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 15  1  0
 13 14  2  0
 12 16  1  0
 16 17  1  6
 16 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 24 26  2  0
 16 27  1  0
 27 29  1  0
 27 28  2  0
  6 30  1  0
 30 31  2  0
 31 32  1  0
 31  3  1  0
 26 19  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  4 36  1  0
  5 37  1  0
  7 38  1  0
  8 39  1  0
 12 40  1  1
 15 41  1  0
 17 42  1  0
 18 43  1  0
 18 44  1  0
 20 45  1  0
 21 46  1  0
 23 47  1  0
 25 48  1  0
 26 49  1  0
 29 50  1  0
 30 51  1  0
 32 52  1  0
M  END


  Mrv1652304292201042D          

 32 33  0  0  1  0            999 V2000
   -3.7475   -6.2862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1976   -5.5949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8239   -4.8593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0001   -4.8152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5500   -5.5066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9236   -6.2421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4735   -6.9335    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6264   -4.0797    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8026   -4.0355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8791   -2.6086    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6051   -3.2559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2314   -2.5203    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5924   -2.4762    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4162   -2.4320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7899   -1.6965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3397   -1.0051    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7134   -0.2696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5372   -0.2255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9874   -0.9168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6137   -1.6524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8112   -0.8727    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9109    0.5101    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5482   -1.6524    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6365   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3720   -3.6737    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0549   -3.7501    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6816   -1.8290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3079   -1.0934    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5054   -1.8731    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1211   -7.0218    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6710   -7.7131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  4  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 20 22  1  0  0  0  0
 19 23  1  0  0  0  0
 14 24  1  1  0  0  0
 14 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 13 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
  1 31  1  0  0  0  0
 31 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0077920

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(\C=C\C(=O)O[C@H](C(O)=O)[C@](O)(CC2=CC=C(O)C(O)=C2)C(O)=O)C=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C21H20O11/c1-31-16-6-3-11(8-15(16)24)4-7-17(25)32-18(19(26)27)21(30,20(28)29)10-12-2-5-13(22)14(23)9-12/h2-9,18,22-24,30H,10H2,1H3,(H,26,27)(H,28,29)/b7-4+/t18-,21-/m1/s1

> <INCHI_KEY>
YVHLLZXSGPDXOA-ZHBFVYIWSA-N

> <FORMULA>
C21H20O11

> <MOLECULAR_WEIGHT>
448.38

> <EXACT_MASS>
448.100561464

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
42.67332184370194

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3S)-2-[(3,4-dihydroxyphenyl)methyl]-2-hydroxy-3-{[(2E)-3-(3-hydroxy-4-methoxyphenyl)prop-2-enoyl]oxy}butanedioic acid

> <ALOGPS_LOGP>
2.64

> <JCHEM_LOGP>
2.225815852333333

> <ALOGPS_LOGS>
-3.40

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
4.417809142576285

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.9865725478171647

> <JCHEM_PKA_STRONGEST_BASIC>
-4.510960343020998

> <JCHEM_POLAR_SURFACE_AREA>
191.04999999999998

> <JCHEM_REFRACTIVITY>
107.51929999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.78e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S)-2-[(3,4-dihydroxyphenyl)methyl]-2-hydroxy-3-{[(2E)-3-(3-hydroxy-4-methoxyphenyl)prop-2-enoyl]oxy}butanedioic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      -6.995 -11.734   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.836 -10.444   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.138  -9.071   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.600  -8.988   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.760 -10.279   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.457 -11.652   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -4.617 -12.942   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -4.903  -7.615   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.365  -7.533   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.667  -6.160   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -3.508  -4.869   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -1.130  -6.078   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -0.432  -4.705   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.106  -4.622   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.644  -4.540   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.341  -3.167   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.501  -1.876   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.198  -0.503   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.736  -0.421   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.576  -1.711   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.879  -3.084   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       7.114  -1.629   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       5.434   0.952   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       1.023  -3.084   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       1.188  -6.160   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       2.561  -6.858   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      -0.102  -7.000   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -1.272  -3.414   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -0.575  -2.041   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      -2.810  -3.496   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      -7.693 -13.107   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -6.853 -14.398   0.000  0.00  0.00           C+0
CONECT    1    2    6   31                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    8                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    4    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   28                                                  
CONECT   14   13   15   24   25                                             
CONECT   15   14   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   23                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20   16                                                       
CONECT   22   20                                                            
CONECT   23   19                                                            
CONECT   24   14                                                            
CONECT   25   14   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   13   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31    1   32                                                       
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   66    0
END

View in JSmol

Synonyms

Value	Source
Cimicifugate b	Generator
Cimicifugic acid	MeSH
Cimicifugic acid a	MeSH
Cimicifugic acid GST	MeSH
Cimicifugic acid C	MeSH
Cimicifugic aicd e	MeSH
Cimicifugic acid D	MeSH

Chemical Formula

C₂₁H₂₀O₁₁

Average Mass

448.3800 Da

Monoisotopic Mass

448.10056 Da

IUPAC Name

(2R,3S)-2-[(3,4-dihydroxyphenyl)methyl]-2-hydroxy-3-{[(2E)-3-(3-hydroxy-4-methoxyphenyl)prop-2-enoyl]oxy}butanedioic acid

Traditional Name

(2R,3S)-2-[(3,4-dihydroxyphenyl)methyl]-2-hydroxy-3-{[(2E)-3-(3-hydroxy-4-methoxyphenyl)prop-2-enoyl]oxy}butanedioic acid

CAS Registry Number

Not Available

SMILES

COC1=CC=C(\C=C\C(=O)O[C@H](C(O)=O)[C@](O)(CC2=CC=C(O)C(O)=C2)C(O)=O)C=C1O

InChI Identifier

InChI=1S/C21H20O11/c1-31-16-6-3-11(8-15(16)24)4-7-17(25)32-18(19(26)27)21(30,20(28)29)10-12-2-5-13(22)14(23)9-12/h2-9,18,22-24,30H,10H2,1H3,(H,26,27)(H,28,29)/b7-4+/t18-,21-/m1/s1

InChI Key

YVHLLZXSGPDXOA-ZHBFVYIWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Actaea heracleifolia	LOTUS Database	35616633
Actaea racemosa	Plant	KNApSAcK
Actaea simplex	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Hydroxycinnamic acids and derivatives

Direct Parent

Coumaric acids and derivatives

Alternative Parents

Substituents

Coumaric acid or derivatives
Cinnamic acid ester
3-phenylpropanoic-acid
Methoxyphenol
Tricarboxylic acid or derivatives
Phenoxy compound
Phenol ether
Styrene
Catechol
Methoxybenzene
Anisole
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
Sugar acid
1-hydroxy-4-unsubstituted benzenoid
Fatty acid ester
Phenol
Alpha-hydroxy acid
Monosaccharide
Monocyclic benzene moiety
Benzenoid
Fatty acyl
Hydroxy acid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tertiary alcohol
Carboxylic acid ester
Carboxylic acid
Carboxylic acid derivative
Ether
Organic oxygen compound
Carbonyl group
Alcohol
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.64	ALOGPS
logP	2.23	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	2.99	ChemAxon
pKa (Strongest Basic)	-4.5	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	191.05 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	107.52 m³·mol⁻¹	ChemAxon
Polarizability	42.67 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00041434

Chemspider ID

4952553

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6449880

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Nuntanakorn P, Jiang B, Einbond LS, Yang H, Kronenberg F, Weinstein IB, Kennelly EJ: Polyphenolic constituents of Actaea racemosa. J Nat Prod. 2006 Mar;69(3):314-8. doi: 10.1021/np0501031. [PubMed:16562825 ]
Burdette JE, Chen SN, Lu ZZ, Xu H, White BE, Fabricant DS, Liu J, Fong HH, Farnsworth NR, Constantinou AI, Van Breemen RB, Pezzuto JM, Bolton JL: Black cohosh (Cimicifuga racemosa L.) protects against menadione-induced DNA damage through scavenging of reactive oxygen species: bioassay-directed isolation and characterization of active principles. J Agric Food Chem. 2002 Nov 20;50(24):7022-8. doi: 10.1021/jf020725h. [PubMed:12428954 ]
Yim SH, Kim HJ, Park SH, Kim J, Williams DR, Jung DW, Lee IS: Cytotoxic caffeic acid derivatives from the rhizomes of Cimicifuga heracleifolia. Arch Pharm Res. 2012 Sep;35(9):1559-65. doi: 10.1007/s12272-012-0906-0. Epub 2012 Oct 9. [PubMed:23054712 ]
Li W, Sun Y, Liang W, Fitzloff JF, van Breemen RB: Identification of caffeic acid derivatives in Actea racemosa (Cimicifuga racemosa, black cohosh) by liquid chromatography/tandem mass spectrometry. Rapid Commun Mass Spectrom. 2003;17(9):978-82. doi: 10.1002/rcm.1008. [PubMed:12717772 ]

Showing NP-Card for (+)-Cimicifugic acid B (NP0077920)

MOL for NP0077920 ((+)-Cimicifugic acid B)

3D MOL for NP0077920 ((+)-Cimicifugic acid B)

3D SDF for NP0077920 ((+)-Cimicifugic acid B)

3D-SDF for NP0077920 ((+)-Cimicifugic acid B)

PDB for NP0077920 ((+)-Cimicifugic acid B)

3D PDB for NP0077920 ((+)-Cimicifugic acid B)

SMILES for NP0077920 ((+)-Cimicifugic acid B)

INCHI for NP0077920 ((+)-Cimicifugic acid B)

Structure for NP0077920 ((+)-Cimicifugic acid B)

3D Structure for NP0077920 ((+)-Cimicifugic acid B)