NP-MRD: Showing NP-Card for Taxuspine O (NP0077808)

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Record Information

Version

2.0

Created at

2022-04-28 22:57:52 UTC

Updated at

2022-04-28 22:57:52 UTC

NP-MRD ID

NP0077808

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Taxuspine O

Description

(3AS,4R,4aS,6R,8R,8aR,9R,10R)-9,10-bis(acetyloxy)-6,8-dihydroxy-3a-(2-hydroxypropan-2-yl)-1,8a-dimethyl-5-methylidene-2-oxo-2H,3H,3aH,4H,4aH,5H,6H,7H,8H,8aH,9H,10H-cyclohexa[f]azulen-4-yl acetate belongs to the class of organic compounds known as taxanes and derivatives. These are diterpenoids with a structure based either on the taxane skeleton, or a derivative thereof. In term of phytochemistry, several derivatives of the taxane skeleton exist: 2(3->20)-Abeotaxane, 3,11-cyclotaxane, 11(15->1),11(10->9)-abeotaxane, 3,8-seco-taxane, and 11(15->1)-abeotaxane, among others. More complex skeletons have been found recently, which include the taxane-derived [3.3.3] Propellane ring system. Taxuspine O is found in Taxus cuspidata . Based on a literature review very few articles have been published on (3aS,4R,4aS,6R,8R,8aR,9R,10R)-9,10-bis(acetyloxy)-6,8-dihydroxy-3a-(2-hydroxypropan-2-yl)-1,8a-dimethyl-5-methylidene-2-oxo-2H,3H,3aH,4H,4aH,5H,6H,7H,8H,8aH,9H,10H-cyclohexa[f]azulen-4-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292200572D          

 36 38  0  0  1  0            999 V2000
    3.9277    2.2241    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4493    1.5848    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2747    0.7785    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5354    0.4123    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7882    0.7619    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5956    1.5641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7732    1.6289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4574    0.8667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6552    0.6741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  3 25  1  6  0  0  0
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  1 33  1  6  0  0  0
 33 34  1  0  0  0  0
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 34 36  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652304292200572D          

 36 38  0  0  1  0            999 V2000
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  1 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
  5 17  1  1  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 17 20  1  0  0  0  0
  4 21  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
  3 25  1  6  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
  2 29  1  0  0  0  0
 29 30  1  6  0  0  0
 27 31  1  1  0  0  0
  2 32  1  6  0  0  0
  1 33  1  6  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0077808

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1[C@H](OC(C)=O)[C@@]2(C)[C@H](O)C[C@@H](O)C(=C)[C@@H]2[C@@H](OC(C)=O)[C@@]2(CC(=O)C(C)=C12)C(C)(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C26H36O10/c1-11-16(30)9-18(32)25(8)20(11)22(35-14(4)28)26(24(6,7)33)10-17(31)12(2)19(26)21(34-13(3)27)23(25)36-15(5)29/h16,18,20-23,30,32-33H,1,9-10H2,2-8H3/t16-,18-,20-,21-,22-,23+,25+,26+/m1/s1

> <INCHI_KEY>
YBKLIOKMYMZPJB-WWEXUYEYSA-N

> <FORMULA>
C26H36O10

> <MOLECULAR_WEIGHT>
508.564

> <EXACT_MASS>
508.230847359

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
51.139977761324

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3aS,4R,4aS,6R,8R,8aR,9R,10R)-9,10-bis(acetyloxy)-6,8-dihydroxy-3a-(2-hydroxypropan-2-yl)-1,8a-dimethyl-5-methylidene-2-oxo-2H,3H,3aH,4H,4aH,5H,6H,7H,8H,8aH,9H,10H-cyclohexa[f]azulen-4-yl acetate

> <ALOGPS_LOGP>
0.92

> <JCHEM_LOGP>
-0.7210467393333335

> <ALOGPS_LOGS>
-2.91

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.581980091907223

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.069448598685991

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9579012884288947

> <JCHEM_POLAR_SURFACE_AREA>
156.66

> <JCHEM_REFRACTIVITY>
125.13659999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.25e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3aS,4R,4aS,6R,8R,8aR,9R,10R)-9,10-bis(acetyloxy)-6,8-dihydroxy-3a-(2-hydroxypropan-2-yl)-1,8a-dimethyl-5-methylidene-2-oxo-3H,4H,4aH,6H,7H,8H,9H,10H-cyclohexa[f]azulen-4-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       7.332   4.152   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.305   2.958   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.979   1.453   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.599   0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.205   1.422   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.845   2.920   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.310   3.041   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.721   1.618   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       1.223   1.258   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.892   0.618   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.505   4.354   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.792   4.134   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       5.108   5.514   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.571   5.612   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       2.127   5.077   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.888   6.992   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.291  -0.115   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.264  -1.309   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.377  -1.653   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       3.753  -0.202   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       6.617  -0.770   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       7.959  -1.525   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       9.284  -0.740   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       7.976  -3.065   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.120   0.418   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.741  -0.991   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      10.586   0.889   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.912   2.394   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       9.772   3.429   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      10.098   4.934   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      11.727  -0.146   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       8.743   4.435   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       7.984   5.546   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       7.103   6.809   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       5.568   6.677   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       7.755   8.204   0.000  0.00  0.00           C+0
CONECT    1    2   12   33                                                  
CONECT    2    1    3   29   32                                             
CONECT    3    2    4   25                                                  
CONECT    4    3    5   21                                                  
CONECT    5    4    6   10   17                                             
CONECT    6    5    7   12                                                  
CONECT    7    6    8   11                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8    5                                                       
CONECT   11    7                                                            
CONECT   12    6    1   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17    5   18   19   20                                             
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20   17                                                            
CONECT   21    4   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25    3   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   31                                                  
CONECT   28   27   29                                                       
CONECT   29   28    2   30                                                  
CONECT   30   29                                                            
CONECT   31   27                                                            
CONECT   32    2                                                            
CONECT   33    1   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   76    0
END

View in JSmol

Synonyms

Value	Source
(3AS,4R,4as,6R,8R,8ar,9R,10R)-9,10-bis(acetyloxy)-6,8-dihydroxy-3a-(2-hydroxypropan-2-yl)-1,8a-dimethyl-5-methylidene-2-oxo-2H,3H,3ah,4H,4ah,5H,6H,7H,8H,8ah,9H,10H-cyclohexa[F]azulen-4-yl acetic acid	Generator

Chemical Formula

C₂₆H₃₆O₁₀

Average Mass

508.5640 Da

Monoisotopic Mass

508.23085 Da

IUPAC Name

(3aS,4R,4aS,6R,8R,8aR,9R,10R)-9,10-bis(acetyloxy)-6,8-dihydroxy-3a-(2-hydroxypropan-2-yl)-1,8a-dimethyl-5-methylidene-2-oxo-2H,3H,3aH,4H,4aH,5H,6H,7H,8H,8aH,9H,10H-cyclohexa[f]azulen-4-yl acetate

Traditional Name

(3aS,4R,4aS,6R,8R,8aR,9R,10R)-9,10-bis(acetyloxy)-6,8-dihydroxy-3a-(2-hydroxypropan-2-yl)-1,8a-dimethyl-5-methylidene-2-oxo-3H,4H,4aH,6H,7H,8H,9H,10H-cyclohexa[f]azulen-4-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1[C@H](OC(C)=O)[C@@]2(C)[C@H](O)C[C@@H](O)C(=C)[C@@H]2[C@@H](OC(C)=O)[C@@]2(CC(=O)C(C)=C12)C(C)(C)O

InChI Identifier

InChI=1S/C26H36O10/c1-11-16(30)9-18(32)25(8)20(11)22(35-14(4)28)26(24(6,7)33)10-17(31)12(2)19(26)21(34-13(3)27)23(25)36-15(5)29/h16,18,20-23,30,32-33H,1,9-10H2,2-8H3/t16-,18-,20-,21-,22-,23+,25+,26+/m1/s1

InChI Key

YBKLIOKMYMZPJB-WWEXUYEYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Taxus cuspidata	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as taxanes and derivatives. These are diterpenoids with a structure based either on the taxane skeleton, or a derivative thereof. In term of phytochemistry, several derivatives of the taxane skeleton exist: 2(3->20)-Abeotaxane, 3,11-cyclotaxane, 11(15->1),11(10->9)-abeotaxane, 3,8-seco-taxane, and 11(15->1)-abeotaxane, among others. More complex skeletons have been found recently, which include the taxane-derived [3.3.3] Propellane ring system.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Taxanes and derivatives

Alternative Parents

Substituents

11(15->1)-abeotaxane diterpenoid
Tricarboxylic acid or derivatives
Tertiary alcohol
Cyclic alcohol
Cyclic ketone
Secondary alcohol
Ketone
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.92	ALOGPS
logP	-0.72	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	14.07	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	156.66 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	125.14 m³·mol⁻¹	ChemAxon
Polarizability	51.14 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163069497

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Taxuspine O (NP0077808)

MOL for NP0077808 (Taxuspine O)

3D MOL for NP0077808 (Taxuspine O)

3D SDF for NP0077808 (Taxuspine O)

3D-SDF for NP0077808 (Taxuspine O)

PDB for NP0077808 (Taxuspine O)

3D PDB for NP0077808 (Taxuspine O)

SMILES for NP0077808 (Taxuspine O)

INCHI for NP0077808 (Taxuspine O)

Structure for NP0077808 (Taxuspine O)

3D Structure for NP0077808 (Taxuspine O)