NP-MRD: Showing NP-Card for (-)-1-Hydroxy-2,7,9-trideacetylbaccatin I (NP0077440)

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Record Information

Version

2.0

Created at

2022-04-28 22:35:45 UTC

Updated at

2022-04-28 22:35:45 UTC

NP-MRD ID

NP0077440

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-1-Hydroxy-2,7,9-trideacetylbaccatin I

Description

(1'S,2R,2'S,3'R,5'S,7'S,8'S,9'R,10'R,13'S)-10',13'-bis(acetyloxy)-1',2',7',9'-tetrahydroxy-8',12',15',15'-tetramethylspiro[oxirane-2,4'-tricyclo[9.3.1.0³,⁸]Pentadecan]-11'-en-5'-yl acetate belongs to the class of organic compounds known as taxanes and derivatives. These are diterpenoids with a structure based either on the taxane skeleton, or a derivative thereof. In term of phytochemistry, several derivatives of the taxane skeleton exist: 2(3->20)-Abeotaxane, 3,11-cyclotaxane, 11(15->1),11(10->9)-abeotaxane, 3,8-seco-taxane, and 11(15->1)-abeotaxane, among others. More complex skeletons have been found recently, which include the taxane-derived [3.3.3] Propellane ring system. (-)-1-Hydroxy-2,7,9-trideacetylbaccatin I is found in Taxus yunnanensis. Based on a literature review very few articles have been published on (1'S,2R,2'S,3'R,5'S,7'S,8'S,9'R,10'R,13'S)-10',13'-bis(acetyloxy)-1',2',7',9'-tetrahydroxy-8',12',15',15'-tetramethylspiro[oxirane-2,4'-tricyclo[9.3.1.0³,⁸]Pentadecan]-11'-en-5'-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292200352D          

 37 40  0  0  1  0            999 V2000
    4.0463   -0.8120    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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  1 37  1  6  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652304292200352D          

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    1.6590    2.8140    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3093    1.7212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2856    1.3787    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9397   -1.6301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  4  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  3 12  1  6  0  0  0
 12 13  1  0  0  0  0
  3 13  1  0  0  0  0
  2 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
  1 21  1  0  0  0  0
 21 22  1  1  0  0  0
 20 23  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 19 27  1  0  0  0  0
 15 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 18 30  1  0  0  0  0
 17 31  1  1  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 15 35  1  6  0  0  0
 14 36  1  1  0  0  0
  1 37  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0077440

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1C[C@@]2(O)[C@@H](O)[C@@H]3[C@@]4(CO4)[C@H](C[C@H](O)[C@@]3(C)[C@@H](O)[C@H](OC(C)=O)C(=C1C)C2(C)C)OC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C26H38O11/c1-11-15(35-12(2)27)9-26(33)22(32)20-24(7,16(30)8-17(36-13(3)28)25(20)10-34-25)21(31)19(37-14(4)29)18(11)23(26,5)6/h15-17,19-22,30-33H,8-10H2,1-7H3/t15-,16-,17-,19+,20-,21-,22-,24+,25+,26+/m0/s1

> <INCHI_KEY>
FZSTXGZIVKPKQT-FAIJNDQNSA-N

> <FORMULA>
C26H38O11

> <MOLECULAR_WEIGHT>
526.579

> <EXACT_MASS>
526.241412044

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
53.2888515185114

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1'S,2R,2'S,3'R,5'S,7'S,8'S,9'R,10'R,13'S)-10',13'-bis(acetyloxy)-1',2',7',9'-tetrahydroxy-8',12',15',15'-tetramethylspiro[oxirane-2,4'-tricyclo[9.3.1.0^{3,8}]pentadecan]-11'-en-5'-yl acetate

> <ALOGPS_LOGP>
0.35

> <JCHEM_LOGP>
-1.7788108823333344

> <ALOGPS_LOGS>
-2.55

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.6260211083925

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.989555887126325

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0093141416237783

> <JCHEM_POLAR_SURFACE_AREA>
172.35

> <JCHEM_REFRACTIVITY>
125.36969999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.48e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'S,2R,2'S,3'R,5'S,7'S,8'S,9'R,10'R,13'S)-10',13'-bis(acetyloxy)-1',2',7',9'-tetrahydroxy-8',12',15',15'-tetramethylspiro[oxirane-2,4'-tricyclo[9.3.1.0^{3,8}]pentadecan]-11'-en-5'-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       7.553  -1.516   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.922  -0.021   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.401   0.408   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.512  -0.659   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.143  -2.155   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.664  -2.583   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       8.295  -4.078   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      11.991  -0.231   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      13.101  -1.298   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      14.581  -0.870   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      12.733  -2.793   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       8.973   1.887   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      10.468   1.518   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.063   1.351   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.504   1.828   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.177   2.751   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.699   2.199   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.552   0.628   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.790  -0.412   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.658  -1.792   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.180  -2.277   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       6.331  -3.810   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       3.714  -3.009   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       4.297  -4.435   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       5.823  -4.643   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       3.354  -5.652   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.746   0.632   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.525  -0.696   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.232   0.227   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       1.127   0.043   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       1.476   3.135   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       1.675   4.662   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.452   5.597   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       3.097   5.253   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       6.177   3.213   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0       8.000   2.574   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0       7.354  -3.043   0.000  0.00  0.00           C+0
CONECT    1    2    6   21   37                                             
CONECT    2    1    3   14                                                  
CONECT    3    2    4   12   13                                             
CONECT    4    3    5    8                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    4    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    3   13                                                       
CONECT   13   12    3                                                       
CONECT   14    2   15   36                                                  
CONECT   15   14   16   27   35                                             
CONECT   16   15   17                                                       
CONECT   17   16   18   31                                                  
CONECT   18   17   19   30                                                  
CONECT   19   18   20   27                                                  
CONECT   20   19   21   23                                                  
CONECT   21   20    1   22                                                  
CONECT   22   21                                                            
CONECT   23   20   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24                                                            
CONECT   27   19   15   28   29                                             
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   18                                                            
CONECT   31   17   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35   15                                                            
CONECT   36   14                                                            
CONECT   37    1                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   80    0
END

View in JSmol

Synonyms

Value	Source
(1's,2R,2's,3'r,5's,7's,8's,9'r,10'r,13's)-10',13'-Bis(acetyloxy)-1',2',7',9'-tetrahydroxy-8',12',15',15'-tetramethylspiro[oxirane-2,4'-tricyclo[9.3.1.0,]pentadecan]-11'-en-5'-yl acetic acid	Generator

Chemical Formula

C₂₆H₃₈O₁₁

Average Mass

526.5790 Da

Monoisotopic Mass

526.24141 Da

IUPAC Name

(1'S,2R,2'S,3'R,5'S,7'S,8'S,9'R,10'R,13'S)-10',13'-bis(acetyloxy)-1',2',7',9'-tetrahydroxy-8',12',15',15'-tetramethylspiro[oxirane-2,4'-tricyclo[9.3.1.0^{3,8}]pentadecan]-11'-en-5'-yl acetate

Traditional Name

(1'S,2R,2'S,3'R,5'S,7'S,8'S,9'R,10'R,13'S)-10',13'-bis(acetyloxy)-1',2',7',9'-tetrahydroxy-8',12',15',15'-tetramethylspiro[oxirane-2,4'-tricyclo[9.3.1.0^{3,8}]pentadecan]-11'-en-5'-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1C[C@@]2(O)[C@@H](O)[C@@H]3[C@@]4(CO4)[C@H](C[C@H](O)[C@@]3(C)[C@@H](O)[C@H](OC(C)=O)C(=C1C)C2(C)C)OC(C)=O

InChI Identifier

InChI=1S/C26H38O11/c1-11-15(35-12(2)27)9-26(33)22(32)20-24(7,16(30)8-17(36-13(3)28)25(20)10-34-25)21(31)19(37-14(4)29)18(11)23(26,5)6/h15-17,19-22,30-33H,8-10H2,1-7H3/t15-,16-,17-,19+,20-,21-,22-,24+,25+,26+/m0/s1

InChI Key

FZSTXGZIVKPKQT-FAIJNDQNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Taxus wallichiana var. yunnanensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as taxanes and derivatives. These are diterpenoids with a structure based either on the taxane skeleton, or a derivative thereof. In term of phytochemistry, several derivatives of the taxane skeleton exist: 2(3->20)-Abeotaxane, 3,11-cyclotaxane, 11(15->1),11(10->9)-abeotaxane, 3,8-seco-taxane, and 11(15->1)-abeotaxane, among others. More complex skeletons have been found recently, which include the taxane-derived [3.3.3] Propellane ring system.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Taxanes and derivatives

Alternative Parents

Substituents

Taxane diterpenoid
Tricarboxylic acid or derivatives
Cyclic alcohol
Tertiary alcohol
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Dialkyl ether
Oxirane
Ether
Polyol
Oxacycle
Organoheterocyclic compound
Carbonyl group
Alcohol
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.35	ALOGPS
logP	-1.8	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	12.99	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	172.35 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	125.37 m³·mol⁻¹	ChemAxon
Polarizability	53.29 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163042827

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-1-Hydroxy-2,7,9-trideacetylbaccatin I (NP0077440)

MOL for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

3D MOL for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

3D SDF for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

3D-SDF for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

PDB for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

3D PDB for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

SMILES for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

INCHI for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

Structure for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)

3D Structure for NP0077440 ((-)-1-Hydroxy-2,7,9-trideacetylbaccatin I)