NP-MRD: Showing NP-Card for Talaromycin D (NP0077239)

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Record Information

Version

2.0

Created at

2022-04-28 22:23:27 UTC

Updated at

2022-04-28 22:23:27 UTC

NP-MRD ID

NP0077239

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Talaromycin D

Description

(3S,4S,6S,9R)-9-ethyl-3-(hydroxymethyl)-1,7-dioxaspiro[5.5]Undecan-4-ol belongs to the class of organic compounds known as ketals. These are acetals derived from ketones by replacement of the oxo group by two hydrocarbyloxy groups R2C(OR)2 ( R not Hydrogen ). This term, once abandoned, has been reinstated as a subclass of acetals. Talaromycin D is found in Talaromyces stipitatus. Based on a literature review very few articles have been published on (3S,4S,6S,9R)-9-ethyl-3-(hydroxymethyl)-1,7-dioxaspiro[5.5]Undecan-4-ol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 39  0  0  0  0  0  0  0  0999 V2000
    4.3380    1.1399   -0.1924 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4757    0.4128   -1.1853 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1548    0.1124   -0.5363 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2996   -0.7464    0.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9637   -1.2141    1.1279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1937   -0.6101    0.3713 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3690   -1.5510    0.6862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6823   -0.9112    0.4127 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4306   -1.6875   -0.5015 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6040    0.4684   -0.1509 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9474    1.1493    0.1455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9552    2.4499   -0.3518 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5006    1.3074    0.3832 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4173    0.6448    0.8627 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0506   -0.6174   -0.9858 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2200   -0.6230   -1.4643 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2493    1.5112   -0.7320 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7857    2.0463    0.1258 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6697    0.5165    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9630   -0.4781   -1.6138 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2786    1.1028   -2.0334 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6818    1.0739   -0.2656 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8968   -1.6494    0.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9095   -0.2712    1.4873 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8944   -2.3279    1.1560 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8259   -0.9018    2.2055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3248   -1.9008    1.7253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2549   -2.4402    0.0386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2930   -0.8706    1.3395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9456   -2.5124   -0.7084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5581    0.4150   -1.2773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1075    1.2198    1.2474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7834    0.5702   -0.2846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9025    3.1258    0.3937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2153    2.0845   -0.3849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9261    1.9214    1.2314 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5793   -1.6934   -1.4762 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2763   -0.2657   -2.5006 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  1  0
 13 14  1  0
  6 15  1  6
 15 16  1  0
 16  3  1  0
 14  6  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  1
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  7 27  1  0
  7 28  1  0
  8 29  1  1
  9 30  1  0
 10 31  1  6
 11 32  1  0
 11 33  1  0
 12 34  1  0
 13 35  1  0
 13 36  1  0
 16 37  1  0
 16 38  1  0
M  END


  Mrv1652304292200232D          

 16 17  0  0  1  0            999 V2000
   -0.1105    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1105   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480   -0.3020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  4  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  4 12  1  0  0  0  0
 10 13  1  6  0  0  0
 13 14  1  0  0  0  0
  1 15  1  1  0  0  0
 15 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0077239

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H]1CC[C@]2(C[C@H](O)[C@@H](CO)CO2)OC1

> <INCHI_IDENTIFIER>
InChI=1S/C12H22O4/c1-2-9-3-4-12(15-7-9)5-11(14)10(6-13)8-16-12/h9-11,13-14H,2-8H2,1H3/t9-,10+,11+,12+/m1/s1

> <INCHI_KEY>
VDWRKBZMQNPUOB-RHYQMDGZSA-N

> <FORMULA>
C12H22O4

> <MOLECULAR_WEIGHT>
230.304

> <EXACT_MASS>
230.151809188

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
25.260162614927598

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,4S,6S,9R)-9-ethyl-3-(hydroxymethyl)-1,7-dioxaspiro[5.5]undecan-4-ol

> <ALOGPS_LOGP>
0.57

> <JCHEM_LOGP>
0.9010921923333336

> <ALOGPS_LOGS>
-1.04

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.49595220797654

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.549484821842945

> <JCHEM_PKA_STRONGEST_BASIC>
-2.660247192862717

> <JCHEM_POLAR_SURFACE_AREA>
58.92

> <JCHEM_REFRACTIVITY>
59.52119999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.12e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S,6S,9R)-9-ethyl-3-(hydroxymethyl)-1,7-dioxaspiro[5.5]undecan-4-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       2.104   2.104   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -0.206  -1.897   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       3.644   2.104   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.954   0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.644  -0.564   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.264  -0.564   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.746   0.770   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.516  -0.564   0.000  0.00  0.00           O+0
CONECT    1    2    6   15                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    8   12                                             
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    4    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11    4                                                       
CONECT   13   10   14                                                       
CONECT   14   13                                                            
CONECT   15    1   16                                                       
CONECT   16   15                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₂H₂₂O₄

Average Mass

230.3040 Da

Monoisotopic Mass

230.15181 Da

IUPAC Name

(3S,4S,6S,9R)-9-ethyl-3-(hydroxymethyl)-1,7-dioxaspiro[5.5]undecan-4-ol

Traditional Name

(3S,4S,6S,9R)-9-ethyl-3-(hydroxymethyl)-1,7-dioxaspiro[5.5]undecan-4-ol

CAS Registry Number

Not Available

SMILES

CC[C@@H]1CC[C@]2(C[C@H](O)[C@@H](CO)CO2)OC1

InChI Identifier

InChI=1S/C12H22O4/c1-2-9-3-4-12(15-7-9)5-11(14)10(6-13)8-16-12/h9-11,13-14H,2-8H2,1H3/t9-,10+,11+,12+/m1/s1

InChI Key

VDWRKBZMQNPUOB-RHYQMDGZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Talaromyces stipitatus	Fungi	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ketals. These are acetals derived from ketones by replacement of the oxo group by two hydrocarbyloxy groups R2C(OR)2 ( R not Hydrogen ). This term, once abandoned, has been reinstated as a subclass of acetals.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Ethers

Direct Parent

Ketals

Alternative Parents

Substituents

Ketal
Oxane
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Primary alcohol
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.57	ALOGPS
logP	0.9	ChemAxon
logS	-1	ALOGPS
pKa (Strongest Acidic)	14.55	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	58.92 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	59.52 m³·mol⁻¹	ChemAxon
Polarizability	25.26 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163090404

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Talaromycin D (NP0077239)

MOL for NP0077239 (Talaromycin D)

3D MOL for NP0077239 (Talaromycin D)

3D SDF for NP0077239 (Talaromycin D)

3D-SDF for NP0077239 (Talaromycin D)

PDB for NP0077239 (Talaromycin D)

3D PDB for NP0077239 (Talaromycin D)

SMILES for NP0077239 (Talaromycin D)

INCHI for NP0077239 (Talaromycin D)

Structure for NP0077239 (Talaromycin D)

3D Structure for NP0077239 (Talaromycin D)