NP-MRD: Showing NP-Card for Malonganenone B (NP0076832)

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Record Information

Version

2.0

Created at

2022-04-28 22:01:16 UTC

Updated at

2022-04-28 22:01:16 UTC

NP-MRD ID

NP0076832

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Malonganenone B

Description

Malonganenone B belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. Malonganenone B is found in Euplexaura nuttingi and Leptogorgia gilchristi. Malonganenone B was first documented in 2011 (PMID: 21426241). Based on a literature review very few articles have been published on Malonganenone B (PMID: 22246312).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292200012D          

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M  END

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M  END
> <DATABASE_ID>
NP0076832

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CNC(=O)C1=C(N=CN1C\C=C(/C)CC\C=C(/C)CCC\C(C)=C/C(=O)CC(C)C)N(C)C=O

> <INCHI_IDENTIFIER>
InChI=1S/C27H42N4O3/c1-20(2)16-24(33)17-23(5)13-9-11-21(3)10-8-12-22(4)14-15-31-18-29-26(30(7)19-32)25(31)27(34)28-6/h10,14,17-20H,8-9,11-13,15-16H2,1-7H3,(H,28,34)/b21-10+,22-14+,23-17-

> <INCHI_KEY>
BRGBNADJYSOXIE-FGVXUPOYSA-N

> <FORMULA>
C27H42N4O3

> <MOLECULAR_WEIGHT>
470.658

> <EXACT_MASS>
470.325691228

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
53.80130700466245

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-methyl-4-(N-methylformamido)-1-[(2E,6E,11Z)-3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl]-1H-imidazole-5-carboxamide

> <ALOGPS_LOGP>
4.40

> <JCHEM_LOGP>
4.646800417333332

> <ALOGPS_LOGS>
-5.41

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.085772330148846

> <JCHEM_PKA_STRONGEST_BASIC>
1.5886162915146433

> <JCHEM_POLAR_SURFACE_AREA>
84.30000000000001

> <JCHEM_REFRACTIVITY>
141.85809999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.83e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-methyl-5-(N-methylformamido)-3-[(2E,6E,11Z)-3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl]imidazole-4-carboxamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      -0.274   4.390   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -0.274   5.930   0.000  0.00  0.00           O+0
HETATM    3  N   UNK     0       1.060   3.620   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.770   1.651   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.915   0.620   0.000  0.00  0.00           O+0
HETATM    8  N   UNK     0       4.091   3.157   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       5.555   3.633   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       1.830  -0.290   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      -0.186   1.175   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       2.735  -1.536   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.267  -1.375   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.172  -2.621   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.703  -2.460   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.609  -3.706   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.140  -3.545   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.045  -4.790   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      11.577  -4.629   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      12.482  -5.875   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      14.014  -5.714   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      14.919  -6.960   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      16.450  -6.799   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      17.077  -5.392   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      18.608  -5.231   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      16.172  -4.147   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      16.798  -2.740   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      18.329  -2.579   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      15.893  -1.494   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      14.292  -8.367   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.419  -6.197   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       4.545  -4.027   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       2.393   4.390   0.000  0.00  0.00           C+0
CONECT    1    2    3                                                       
CONECT    2    1                                                            
CONECT    3    1    4   34                                                  
CONECT    4    3    5   12                                                  
CONECT    5    4    6   10                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8                                                            
CONECT   10    5   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11    4                                                       
CONECT   13   10   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   33                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   32                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   31                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   23                                                            
CONECT   32   19                                                            
CONECT   33   15                                                            
CONECT   34    3                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₂N₄O₃

Average Mass

470.6580 Da

Monoisotopic Mass

470.32569 Da

IUPAC Name

N-methyl-4-(N-methylformamido)-1-[(2E,6E,11Z)-3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl]-1H-imidazole-5-carboxamide

Traditional Name

N-methyl-5-(N-methylformamido)-3-[(2E,6E,11Z)-3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl]imidazole-4-carboxamide

CAS Registry Number

Not Available

SMILES

CNC(=O)C1=C(N=CN1C\C=C(/C)CC\C=C(/C)CCC\C(C)=C/C(=O)CC(C)C)N(C)C=O

InChI Identifier

InChI=1S/C27H42N4O3/c1-20(2)16-24(33)17-23(5)13-9-11-21(3)10-8-12-22(4)14-15-31-18-29-26(30(7)19-32)25(31)27(34)28-6/h10,14,17-20H,8-9,11-13,15-16H2,1-7H3,(H,28,34)/b21-10+,22-14+,23-17-

InChI Key

BRGBNADJYSOXIE-FGVXUPOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Euplexaura nuttingi	-	KNApSAcK
Leptogorgia gilchristi	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
2-heteroaryl carboxamide
Imidazole-4-carbonyl group
Imidolactam
N-substituted imidazole
Acryloyl-group
Azole
Heteroaromatic compound
Enone
Vinylogous amide
Alpha,beta-unsaturated ketone
Tertiary carboxylic acid amide
Imidazole
Carboxamide group
Secondary carboxylic acid amide
Ketone
Carboxylic acid derivative
Azacycle
Organoheterocyclic compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.4	ALOGPS
logP	4.65	ChemAxon
logS	-5.4	ALOGPS
pKa (Strongest Acidic)	14.09	ChemAxon
pKa (Strongest Basic)	1.59	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	84.3 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	141.86 m³·mol⁻¹	ChemAxon
Polarizability	53.8 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00039721

Chemspider ID

9729380

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11554602

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Clark PG, Lein M, Keyzers RA: Studies of the H-D exchange mechanism of malonganenone B. Org Biomol Chem. 2012 Mar 7;10(9):1725-9. doi: 10.1039/c2ob06926a. Epub 2012 Jan 16. [PubMed:22246312 ]
Cockburn IL, Pesce ER, Pryzborski JM, Davies-Coleman MT, Clark PG, Keyzers RA, Stephens LL, Blatch GL: Screening for small molecule modulators of Hsp70 chaperone activity using protein aggregation suppression assays: inhibition of the plasmodial chaperone PfHsp70-1. Biol Chem. 2011 May;392(5):431-8. doi: 10.1515/BC.2011.040. Epub 2011 Mar 23. [PubMed:21426241 ]

Showing NP-Card for Malonganenone B (NP0076832)

MOL for NP0076832 (Malonganenone B)

3D MOL for NP0076832 (Malonganenone B)

3D SDF for NP0076832 (Malonganenone B)

3D-SDF for NP0076832 (Malonganenone B)

PDB for NP0076832 (Malonganenone B)

3D PDB for NP0076832 (Malonganenone B)

SMILES for NP0076832 (Malonganenone B)

INCHI for NP0076832 (Malonganenone B)

Structure for NP0076832 (Malonganenone B)

3D Structure for NP0076832 (Malonganenone B)