NP-MRD: Showing NP-Card for (+)-Kadsuracoccinic acid B (NP0076746)

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Record Information

Version

2.0

Created at

2022-04-28 21:56:18 UTC

Updated at

2022-04-28 21:56:18 UTC

NP-MRD ID

NP0076746

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Kadsuracoccinic acid B

Description

3-[(3R,3aR,6S,7S,9aS,9bS)-3a,6,9b-trimethyl-3-[(2E)-6-methylhept-2-en-2-yl]-7-(prop-1-en-2-yl)-1H,2H,3H,3aH,4H,6H,7H,8H,9H,9aH,9bH-cyclopenta[a]naphthalen-6-yl]propanoic acid belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (+)-Kadsuracoccinic acid B is found in Kadsura coccinea. Based on a literature review very few articles have been published on 3-[(3R,3aR,6S,7S,9aS,9bS)-3a,6,9b-trimethyl-3-[(2E)-6-methylhept-2-en-2-yl]-7-(prop-1-en-2-yl)-1H,2H,3H,3aH,4H,6H,7H,8H,9H,9aH,9bH-cyclopenta[a]naphthalen-6-yl]propanoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282223562D          

 32 34  0  0  1  0            999 V2000
    2.3637    0.3610    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7983    1.0622    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4083    1.7892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5837    1.8150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1491    1.1137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5391    0.3867    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1045   -0.3145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2799   -0.2887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.1192    2.3271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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 23 30  1  0  0  0  0
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  1 32  1  6  0  0  0
M  END

     RDKit          3D

 80 82  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652304282223562D          

 32 34  0  0  1  0            999 V2000
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 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
  2 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  1 22  1  0  0  0  0
 20 23  1  1  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 23 30  1  0  0  0  0
  2 31  1  1  0  0  0
  1 32  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0076746

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)CC\C=C(/C)[C@H]1CC[C@@]2(C)[C@@H]3CC[C@@H](C(C)=C)[C@](C)(CCC(O)=O)C3=CC[C@]12C

> <INCHI_IDENTIFIER>
InChI=1S/C30H48O2/c1-20(2)10-9-11-22(5)24-14-18-30(8)26-13-12-23(21(3)4)28(6,17-16-27(31)32)25(26)15-19-29(24,30)7/h11,15,20,23-24,26H,3,9-10,12-14,16-19H2,1-2,4-8H3,(H,31,32)/b22-11+/t23-,24+,26+,28-,29+,30-/m0/s1

> <INCHI_KEY>
NUJQBRDVEPPTHP-GLWSSAOJSA-N

> <FORMULA>
C30H48O2

> <MOLECULAR_WEIGHT>
440.712

> <EXACT_MASS>
440.365430786

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
55.26875080695602

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(3R,3aR,6S,7S,9aS,9bS)-3a,6,9b-trimethyl-3-[(2E)-6-methylhept-2-en-2-yl]-7-(prop-1-en-2-yl)-1H,2H,3H,3aH,4H,6H,7H,8H,9H,9aH,9bH-cyclopenta[a]naphthalen-6-yl]propanoic acid

> <ALOGPS_LOGP>
8.53

> <JCHEM_LOGP>
7.921501284333335

> <ALOGPS_LOGS>
-6.15

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.968652163981433

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
136.6668

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.09e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[(3R,3aR,6S,7S,9aS,9bS)-3a,6,9b-trimethyl-3-[(2E)-6-methylhept-2-en-2-yl]-7-(prop-1-en-2-yl)-1H,2H,3H,4H,7H,8H,9H,9aH-cyclopenta[a]naphthalen-6-yl]propanoic acid

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       4.412   0.674   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.223   1.983   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.495   3.340   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.956   3.388   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.145   2.079   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.873   0.722   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.062  -0.587   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.522  -0.539   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.206   0.818   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.606   2.127   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.674   2.984   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.572   4.520   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.809   5.200   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.911   6.737   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       2.089   4.344   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       0.600   3.667   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.745   0.866   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.556  -0.443   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.473   2.223   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.719   1.616   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.832   0.080   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.406  -0.502   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.895   2.610   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.344   2.089   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.520   3.083   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      10.247   4.598   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.423   5.593   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      11.150   7.108   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      12.872   5.071   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       7.622   4.126   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.167   3.200   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.742  -0.713   0.000  0.00  0.00           C+0
CONECT    1    2    6   22   32                                             
CONECT    2    1    3   20   31                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   17                                                  
CONECT   10    9    5   11   16                                             
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   10                                                            
CONECT   17    9   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20    2   21   23                                                  
CONECT   21   20   22                                                       
CONECT   22   21    1                                                       
CONECT   23   20   24   30                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   23                                                            
CONECT   31    2                                                            
CONECT   32    1                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   68    0
END

View in JSmol

Synonyms

Value	Source
3-[(3R,3AR,6S,7S,9as,9BS)-3a,6,9b-trimethyl-3-[(2E)-6-methylhept-2-en-2-yl]-7-(prop-1-en-2-yl)-1H,2H,3H,3ah,4H,6H,7H,8H,9H,9ah,9BH-cyclopenta[a]naphthalen-6-yl]propanoate	Generator

Chemical Formula

C₃₀H₄₈O₂

Average Mass

440.7120 Da

Monoisotopic Mass

440.36543 Da

IUPAC Name

3-[(3R,3aR,6S,7S,9aS,9bS)-3a,6,9b-trimethyl-3-[(2E)-6-methylhept-2-en-2-yl]-7-(prop-1-en-2-yl)-1H,2H,3H,3aH,4H,6H,7H,8H,9H,9aH,9bH-cyclopenta[a]naphthalen-6-yl]propanoic acid

Traditional Name

3-[(3R,3aR,6S,7S,9aS,9bS)-3a,6,9b-trimethyl-3-[(2E)-6-methylhept-2-en-2-yl]-7-(prop-1-en-2-yl)-1H,2H,3H,4H,7H,8H,9H,9aH-cyclopenta[a]naphthalen-6-yl]propanoic acid

CAS Registry Number

Not Available

SMILES

CC(C)CC\C=C(/C)[C@H]1CC[C@@]2(C)[C@@H]3CC[C@@H](C(C)=C)[C@](C)(CCC(O)=O)C3=CC[C@]12C

InChI Identifier

InChI=1S/C30H48O2/c1-20(2)10-9-11-22(5)24-14-18-30(8)26-13-12-23(21(3)4)28(6,17-16-27(31)32)25(26)15-19-29(24,30)7/h11,15,20,23-24,26H,3,9-10,12-14,16-19H2,1-2,4-8H3,(H,31,32)/b22-11+/t23-,24+,26+,28-,29+,30-/m0/s1

InChI Key

NUJQBRDVEPPTHP-GLWSSAOJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Kadsura coccinea	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Carbocyclic fatty acid
Fatty acyl
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	8.53	ALOGPS
logP	7.92	ChemAxon
logS	-6.2	ALOGPS
pKa (Strongest Acidic)	4.97	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	136.67 m³·mol⁻¹	ChemAxon
Polarizability	55.27 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163105285

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Kadsuracoccinic acid B (NP0076746)

MOL for NP0076746 ((+)-Kadsuracoccinic acid B)

3D MOL for NP0076746 ((+)-Kadsuracoccinic acid B)

3D SDF for NP0076746 ((+)-Kadsuracoccinic acid B)

3D-SDF for NP0076746 ((+)-Kadsuracoccinic acid B)

PDB for NP0076746 ((+)-Kadsuracoccinic acid B)

3D PDB for NP0076746 ((+)-Kadsuracoccinic acid B)

SMILES for NP0076746 ((+)-Kadsuracoccinic acid B)

INCHI for NP0076746 ((+)-Kadsuracoccinic acid B)

Structure for NP0076746 ((+)-Kadsuracoccinic acid B)

3D Structure for NP0076746 ((+)-Kadsuracoccinic acid B)