NP-MRD: Showing NP-Card for (-)-Junceellolide A (NP0076732)

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Record Information

Version

2.0

Created at

2022-04-28 21:55:29 UTC

Updated at

2022-04-28 21:55:29 UTC

NP-MRD ID

NP0076732

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Junceellolide A

Description

(1S,2R,3R,7R,8S,9R,11R,13R,14S,17S)-7,9-bis(acetyloxy)-13-chloro-11-hydroxy-8,17-dimethyl-4,12-dimethylidene-16-oxo-15,18-dioxatetracyclo[9.6.1.0¹,¹⁴.0³,⁸]Octadecan-2-yl acetate belongs to the class of organic compounds known as tetracarboxylic acids and derivatives. These are carboxylic acids containing exactly four carboxyl groups. (-)-Junceellolide A is found in Junceella fragilis. Based on a literature review very few articles have been published on (1S,2R,3R,7R,8S,9R,11R,13R,14S,17S)-7,9-bis(acetyloxy)-13-chloro-11-hydroxy-8,17-dimethyl-4,12-dimethylidene-16-oxo-15,18-dioxatetracyclo[9.6.1.0¹,¹⁴.0³,⁸]Octadecan-2-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282223552D          

 37 40  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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  Mrv1652304282223552D          

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 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 19 25  1  1  0  0  0
 14 25  1  0  0  0  0
 19 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 18 29  1  1  0  0  0
 26 30  1  1  0  0  0
 17 31  1  1  0  0  0
 14 32  1  1  0  0  0
 12 33  1  6  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
  6 37  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0076732

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1C(=O)O[C@@H]2[C@H](Cl)C(=C)[C@@]3(O)C[C@@H](OC(C)=O)[C@]4(C)[C@@H](CCC(=C)[C@H]4[C@@H](OC(C)=O)[C@@]12O3)OC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C26H33ClO10/c1-11-8-9-17(33-14(4)28)24(7)18(34-15(5)29)10-25(32)12(2)20(27)22-26(37-25,13(3)23(31)36-22)21(19(11)24)35-16(6)30/h13,17-22,32H,1-2,8-10H2,3-7H3/t13-,17-,18-,19+,20-,21-,22-,24+,25-,26+/m1/s1

> <INCHI_KEY>
VSATZNAMFMGSHA-VPUBRRHFSA-N

> <FORMULA>
C26H33ClO10

> <MOLECULAR_WEIGHT>
540.99

> <EXACT_MASS>
540.176225

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
52.09156146260095

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2R,3R,7R,8S,9R,11R,13R,14S,17S)-2,7-bis(acetyloxy)-13-chloro-11-hydroxy-8,17-dimethyl-4,12-dimethylidene-16-oxo-15,18-dioxatetracyclo[9.6.1.0^{1,14}.0^{3,8}]octadecan-9-yl acetate

> <ALOGPS_LOGP>
2.16

> <JCHEM_LOGP>
2.1876877566666653

> <ALOGPS_LOGS>
-3.57

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.370767698980467

> <JCHEM_PKA_STRONGEST_BASIC>
-4.386226208465943

> <JCHEM_POLAR_SURFACE_AREA>
134.66000000000003

> <JCHEM_REFRACTIVITY>
125.4652

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.45e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,3R,7R,8S,9R,11R,13R,14S,17S)-2,7-bis(acetyloxy)-13-chloro-11-hydroxy-8,17-dimethyl-4,12-dimethylidene-16-oxo-15,18-dioxatetracyclo[9.6.1.0^{1,14}.0^{3,8}]octadecan-9-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      10.416   2.414   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.542   3.682   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.007   3.560   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.499   5.131   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.346   2.169   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.220   0.901   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.755   1.023   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      11.438   0.758   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      13.035   0.305   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      13.867  -1.079   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      14.251   1.283   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.908  -0.658   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.572  -1.499   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.001  -1.182   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.448  -1.580   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.496  -2.886   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.299  -0.503   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.763   1.032   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.307   1.604   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.770   2.414   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.954   4.080   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       5.123   5.478   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       4.256   4.168   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       4.916   7.073   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.740   0.267   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       3.967   3.180   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.443   3.490   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       0.980   4.247   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       1.687   2.151   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       3.141   4.765   0.000  0.00  0.00           C+0
HETATM   31 Cl   UNK     0       0.743  -0.920   0.000  0.00  0.00          Cl+0
HETATM   32  O   UNK     0       4.828  -2.808   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0       8.631  -2.273   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       9.059  -3.951   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      10.430  -4.861   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       8.228  -5.300   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       9.345  -0.228   0.000  0.00  0.00           C+0
CONECT    1    2    7                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   20                                                  
CONECT    6    5    7   12   37                                             
CONECT    7    6    1    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    6   13   33                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   25   32                                             
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   31                                                  
CONECT   18   17   19   29                                                  
CONECT   19   18   20   25   26                                             
CONECT   20   19    5   21                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   19   14                                                       
CONECT   26   19   27   30                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   18                                                       
CONECT   30   26                                                            
CONECT   31   17                                                            
CONECT   32   14                                                            
CONECT   33   12   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34                                                            
CONECT   37    6                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   80    0
END

View in JSmol

Synonyms

Value	Source
(1S,2R,3R,7R,8S,9R,11R,13R,14S,17S)-7,9-Bis(acetyloxy)-13-chloro-11-hydroxy-8,17-dimethyl-4,12-dimethylidene-16-oxo-15,18-dioxatetracyclo[9.6.1.0,.0,]octadecan-2-yl acetic acid	Generator

Chemical Formula

C₂₆H₃₃ClO₁₀

Average Mass

540.9900 Da

Monoisotopic Mass

540.17622 Da

IUPAC Name

(1S,2R,3R,7R,8S,9R,11R,13R,14S,17S)-2,7-bis(acetyloxy)-13-chloro-11-hydroxy-8,17-dimethyl-4,12-dimethylidene-16-oxo-15,18-dioxatetracyclo[9.6.1.0^{1,14}.0^{3,8}]octadecan-9-yl acetate

Traditional Name

(1S,2R,3R,7R,8S,9R,11R,13R,14S,17S)-2,7-bis(acetyloxy)-13-chloro-11-hydroxy-8,17-dimethyl-4,12-dimethylidene-16-oxo-15,18-dioxatetracyclo[9.6.1.0^{1,14}.0^{3,8}]octadecan-9-yl acetate

CAS Registry Number

Not Available

SMILES

C[C@@H]1C(=O)O[C@@H]2[C@H](Cl)C(=C)[C@@]3(O)C[C@@H](OC(C)=O)[C@]4(C)[C@@H](CCC(=C)[C@H]4[C@@H](OC(C)=O)[C@@]12O3)OC(C)=O

InChI Identifier

InChI=1S/C26H33ClO10/c1-11-8-9-17(33-14(4)28)24(7)18(34-15(5)29)10-25(32)12(2)20(27)22-26(37-25,13(3)23(31)36-22)21(19(11)24)35-16(6)30/h13,17-22,32H,1-2,8-10H2,3-7H3/t13-,17-,18-,19+,20-,21-,22-,24+,25-,26+/m1/s1

InChI Key

VSATZNAMFMGSHA-VPUBRRHFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Junceella fragilis	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tetracarboxylic acids and derivatives. These are carboxylic acids containing exactly four carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tetracarboxylic acids and derivatives

Direct Parent

Tetracarboxylic acids and derivatives

Alternative Parents

Substituents

Tetracarboxylic acid or derivatives
Furopyran
Pyran
Oxane
Gamma butyrolactone
Tetrahydrofuran
Furan
Lactone
Hemiacetal
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organochloride
Organohalogen compound
Carbonyl group
Alkyl halide
Alkyl chloride
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.16	ALOGPS
logP	2.19	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	11.37	ChemAxon
pKa (Strongest Basic)	-4.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	134.66 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	125.47 m³·mol⁻¹	ChemAxon
Polarizability	52.09 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162992202

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Junceellolide A (NP0076732)

MOL for NP0076732 ((-)-Junceellolide A)

3D MOL for NP0076732 ((-)-Junceellolide A)

3D SDF for NP0076732 ((-)-Junceellolide A)

3D-SDF for NP0076732 ((-)-Junceellolide A)

PDB for NP0076732 ((-)-Junceellolide A)

3D PDB for NP0076732 ((-)-Junceellolide A)

SMILES for NP0076732 ((-)-Junceellolide A)

INCHI for NP0076732 ((-)-Junceellolide A)

Structure for NP0076732 ((-)-Junceellolide A)

3D Structure for NP0076732 ((-)-Junceellolide A)