NP-MRD: Showing NP-Card for (-)-Gleditsioside I (NP0076593)

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Record Information

Version

2.0

Created at

2022-04-28 21:47:08 UTC

Updated at

2022-04-28 21:47:08 UTC

NP-MRD ID

NP0076593

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Gleditsioside I

Description

(2S,3R,4S,5S,6R)-3-{[(2S,3R,4S,5R,6S)-5-{[(2S,3R,4S,5R)-3,5-dihydroxy-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl (4aS,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2R,3R,4S,5S,6R)-6-({[(2R,3R,4R,5S)-4,5-dihydroxy-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylate belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton. (-)-Gleditsioside I is found in Gleditsia sinensis . Based on a literature review very few articles have been published on (2S,3R,4S,5S,6R)-3-{[(2S,3R,4S,5R,6S)-5-{[(2S,3R,4S,5R)-3,5-dihydroxy-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl (4aS,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2R,3R,4S,5S,6R)-6-({[(2R,3R,4R,5S)-4,5-dihydroxy-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282223472D          

101112  0  0  1  0            999 V2000
    6.0770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6020   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0145   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5395   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.1270    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3977    1.5642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2732    1.9515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -1.7309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5230   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1105   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5230   -3.1599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -1.7605   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.9980   -1.7309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2355   -2.4454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0605   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4730   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0605   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4730   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2980   -3.1599    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.7105   -2.4454    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.2980   -1.7309    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.7105   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5355   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9480   -3.1599    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.5355   -3.8743    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9480   -4.5888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7730   -4.5888    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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  -10.0105   -3.8743    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.5855   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7605   -3.8743    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105   -3.8743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5230   -4.5888    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6882   -1.1225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7766   -0.7392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1058   -1.1265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3145    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7270    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3145    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7270    2.5559    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5520    2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9645    1.8414    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5520    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.9645    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7895    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3145    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770    3.9849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2520    3.9849    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8395    4.6993    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2520    5.4138    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0770    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    6.1283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6020    2.5559    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7770    2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3645    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7770    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    3.9849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  4 10  1  6  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
  7 14  1  6  0  0  0
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 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
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 16 19  1  0  0  0  0
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 15 22  1  0  0  0  0
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  8 68  1  6  0  0  0
  5 69  1  6  0  0  0
  3 70  1  0  0  0  0
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 94101  1  6  0  0  0
M  END

     RDKit          3D

211222  0  0  0  0  0  0  0  0999 V2000
    3.4745    2.4793   -2.2657 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0625    2.3540   -3.6547 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0992    2.4578   -4.6250 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3810    1.8161   -5.8041 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5832    2.3263   -6.8150 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7180    1.3900   -7.3652 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3133    1.8490   -7.1054 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3187    1.0548   -6.1237 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8981    1.5649   -4.9791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8785    2.8008   -4.7902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5480    0.6998   -3.9525 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4628   -0.2135   -4.7430 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6044    0.5445   -5.3959 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5356    1.1615   -4.3693 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9374    2.5623   -4.6994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8161    0.3240   -4.3483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8915    0.9999   -3.0343 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4264    1.4736   -3.0260 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9478    1.6209   -1.6440 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4168    2.6461   -0.9611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0859    3.0065    0.4407 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6408    1.7009    1.0861 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5688    1.7376    2.5540 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2404    3.0935    3.1287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0170    1.4525    3.0370 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1012    1.2798    4.4759 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1847    0.1947    5.0063 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282223472D          

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M  END
> <DATABASE_ID>
NP0076593

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]2OC(=O)[C@]23CCC(C)(C)C[C@H]2C2=CC[C@@H]4[C@@]5(C)CC[C@H](O[C@@H]6O[C@H](CO[C@H]7OC[C@H](O)[C@@H](O)[C@H]7O[C@@H]7OC[C@@H](O)[C@H](O)[C@H]7O)[C@@H](O)[C@H](O)[C@H]6O)C(C)(C)[C@@H]5CC[C@@]4(C)[C@]2(C)CC3)[C@H](O)[C@H](O)[C@H]1O[C@@H]1OC[C@@H](O)[C@H](O[C@@H]2OC[C@@H](O)[C@H](O)[C@H]2O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C68H110O33/c1-26-51(97-57-50(86)52(32(73)24-90-57)98-55-46(82)38(74)29(70)21-88-55)45(81)49(85)58(93-26)100-54-44(80)41(77)33(20-69)94-61(54)101-62(87)68-17-15-63(2,3)19-28(68)27-9-10-36-65(6)13-12-37(64(4,5)35(65)11-14-67(36,8)66(27,7)16-18-68)96-59-48(84)43(79)42(78)34(95-59)25-92-60-53(40(76)31(72)23-91-60)99-56-47(83)39(75)30(71)22-89-56/h9,26,28-61,69-86H,10-25H2,1-8H3/t26-,28-,29+,30+,31-,32+,33+,34+,35-,36+,37-,38-,39-,40+,41+,42+,43-,44-,45-,46+,47+,48+,49+,50+,51-,52-,53+,54+,55-,56-,57-,58-,59-,60+,61-,65-,66+,67+,68-/m0/s1

> <INCHI_KEY>
YEFIMTZGZGDHKG-ARMDYYPSSA-N

> <FORMULA>
C68H110O33

> <MOLECULAR_WEIGHT>
1455.595

> <EXACT_MASS>
1454.692936002

> <JCHEM_ACCEPTOR_COUNT>
32

> <JCHEM_ATOM_COUNT>
211

> <JCHEM_AVERAGE_POLARIZABILITY>
149.9856042667992

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
18

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5S,6R)-3-{[(2S,3R,4S,5R,6S)-5-{[(2S,3R,4S,5R)-3,5-dihydroxy-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl (4aS,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2R,3R,4S,5S,6R)-6-({[(2R,3R,4R,5S)-4,5-dihydroxy-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylate

> <ALOGPS_LOGP>
0.22

> <JCHEM_LOGP>
-2.7299987993333303

> <ALOGPS_LOGS>
-2.79

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
12

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.994015350733786

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.612022891025186

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6795685621561445

> <JCHEM_POLAR_SURFACE_AREA>
510.43000000000023

> <JCHEM_REFRACTIVITY>
335.1418

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.36e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5S,6R)-3-{[(2S,3R,4S,5R,6S)-5-{[(2S,3R,4S,5R)-3,5-dihydroxy-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl (4aS,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2R,3R,4S,5S,6R)-6-({[(2R,3R,4R,5S)-4,5-dihydroxy-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,7,8,8a,10,11,12,12b,13,14b-tetradecahydropicene-4a-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      11.344   2.104   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.114   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.344  -0.564   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.804  -0.564   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.034   0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.804   2.104   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.494  -1.897   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.034  -1.897   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.874  -1.897   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.414  -1.897   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.742   2.920   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.510   3.643   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.334  -1.897   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       2.104  -3.231   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      -0.206  -1.897   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -0.976  -3.231   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -0.206  -4.565   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -0.976  -5.898   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -2.516  -5.898   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -3.286  -4.565   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -2.516  -3.231   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -3.286  -1.897   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -4.826  -1.897   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -5.596  -0.564   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -7.136  -0.564   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -7.906  -1.897   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -7.136  -3.231   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -5.596  -3.231   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -7.906  -4.565   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -9.446  -1.897   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0     -10.216  -3.231   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -9.446  -4.565   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0     -10.216  -5.898   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0     -11.756  -5.898   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0     -12.526  -4.565   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0     -11.756  -3.231   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0     -12.526  -1.897   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0     -14.066  -4.565   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0     -14.836  -5.898   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0     -14.066  -7.232   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0     -14.836  -8.566   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0     -16.376  -8.566   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0     -17.146  -7.232   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0     -16.376  -5.898   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0     -17.146  -4.565   0.000  0.00  0.00           O+0
HETATM   58  O   UNK     0     -18.686  -7.232   0.000  0.00  0.00           O+0
HETATM   59  O   UNK     0     -17.146  -9.899   0.000  0.00  0.00           O+0
HETATM   60  O   UNK     0     -12.526  -7.232   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0      -7.906   0.770   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0      -4.826   0.770   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0      -4.826  -4.565   0.000  0.00  0.00           O+0
HETATM   64  O   UNK     0      -3.286  -7.232   0.000  0.00  0.00           O+0
HETATM   65  C   UNK     0      -0.206  -7.232   0.000  0.00  0.00           C+0
HETATM   66  O   UNK     0      -0.976  -8.566   0.000  0.00  0.00           O+0
HETATM   67  C   UNK     0       5.954  -1.897   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0       6.885  -2.095   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0       8.264   2.104   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0      12.650  -1.380   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0      11.397  -2.103   0.000  0.00  0.00           C+0
HETATM   72  O   UNK     0      13.654   0.770   0.000  0.00  0.00           O+0
HETATM   73  C   UNK     0      14.424   2.104   0.000  0.00  0.00           C+0
HETATM   74  O   UNK     0      13.654   3.437   0.000  0.00  0.00           O+0
HETATM   75  C   UNK     0      14.424   4.771   0.000  0.00  0.00           C+0
HETATM   76  C   UNK     0      15.964   4.771   0.000  0.00  0.00           C+0
HETATM   77  C   UNK     0      16.734   3.437   0.000  0.00  0.00           C+0
HETATM   78  C   UNK     0      15.964   2.104   0.000  0.00  0.00           C+0
HETATM   79  O   UNK     0      16.734   0.770   0.000  0.00  0.00           O+0
HETATM   80  O   UNK     0      18.274   3.437   0.000  0.00  0.00           O+0
HETATM   81  O   UNK     0      16.734   6.105   0.000  0.00  0.00           O+0
HETATM   82  C   UNK     0      13.654   6.105   0.000  0.00  0.00           C+0
HETATM   83  O   UNK     0      12.114   6.105   0.000  0.00  0.00           O+0
HETATM   84  C   UNK     0      11.344   7.438   0.000  0.00  0.00           C+0
HETATM   85  C   UNK     0       9.804   7.438   0.000  0.00  0.00           C+0
HETATM   86  C   UNK     0       9.034   8.772   0.000  0.00  0.00           C+0
HETATM   87  C   UNK     0       9.804  10.106   0.000  0.00  0.00           C+0
HETATM   88  C   UNK     0      11.344  10.106   0.000  0.00  0.00           C+0
HETATM   89  O   UNK     0      12.114   8.772   0.000  0.00  0.00           O+0
HETATM   90  O   UNK     0       9.034  11.439   0.000  0.00  0.00           O+0
HETATM   91  O   UNK     0       7.494   8.772   0.000  0.00  0.00           O+0
HETATM   92  O   UNK     0       9.034   6.105   0.000  0.00  0.00           O+0
HETATM   93  C   UNK     0       7.494   6.105   0.000  0.00  0.00           C+0
HETATM   94  C   UNK     0       6.724   4.771   0.000  0.00  0.00           C+0
HETATM   95  C   UNK     0       5.184   4.771   0.000  0.00  0.00           C+0
HETATM   96  C   UNK     0       4.414   6.105   0.000  0.00  0.00           C+0
HETATM   97  C   UNK     0       5.184   7.438   0.000  0.00  0.00           C+0
HETATM   98  O   UNK     0       6.724   7.438   0.000  0.00  0.00           O+0
HETATM   99  O   UNK     0       2.874   6.105   0.000  0.00  0.00           O+0
HETATM  100  O   UNK     0       4.414   3.437   0.000  0.00  0.00           O+0
HETATM  101  O   UNK     0       7.494   3.437   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   72                                                  
CONECT    3    2    4   70   71                                             
CONECT    4    3    5   10                                                  
CONECT    5    4    6    7   69                                             
CONECT    6    5    1                                                       
CONECT    7    5    8   14                                                  
CONECT    8    7    9   11   68                                             
CONECT    9    8   10                                                       
CONECT   10    9    4                                                       
CONECT   11    8   12   18   67                                             
CONECT   12   11   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13    7                                                       
CONECT   15   12   16   22                                                  
CONECT   16   15   17   19   25                                             
CONECT   17   16   18                                                       
CONECT   18   17   11                                                       
CONECT   19   16   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23   24                                             
CONECT   22   21   15                                                       
CONECT   23   21                                                            
CONECT   24   21                                                            
CONECT   25   16   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29   33                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31   65                                                  
CONECT   31   30   32   64                                                  
CONECT   32   31   33   63                                                  
CONECT   33   32   28   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   40                                                  
CONECT   36   35   37   62                                                  
CONECT   37   36   38   61                                                  
CONECT   38   37   39   42                                                  
CONECT   39   38   40   41                                                  
CONECT   40   39   35                                                       
CONECT   41   39                                                            
CONECT   42   38   43                                                       
CONECT   43   42   44   48                                                  
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47   60                                                  
CONECT   47   46   48   50                                                  
CONECT   48   47   43   49                                                  
CONECT   49   48                                                            
CONECT   50   47   51                                                       
CONECT   51   50   52   56                                                  
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55   59                                                  
CONECT   55   54   56   58                                                  
CONECT   56   55   51   57                                                  
CONECT   57   56                                                            
CONECT   58   55                                                            
CONECT   59   54                                                            
CONECT   60   46                                                            
CONECT   61   37                                                            
CONECT   62   36                                                            
CONECT   63   32                                                            
CONECT   64   31                                                            
CONECT   65   30   66                                                       
CONECT   66   65                                                            
CONECT   67   11                                                            
CONECT   68    8                                                            
CONECT   69    5                                                            
CONECT   70    3                                                            
CONECT   71    3                                                            
CONECT   72    2   73                                                       
CONECT   73   72   74   78                                                  
CONECT   74   73   75                                                       
CONECT   75   74   76   82                                                  
CONECT   76   75   77   81                                                  
CONECT   77   76   78   80                                                  
CONECT   78   77   73   79                                                  
CONECT   79   78                                                            
CONECT   80   77                                                            
CONECT   81   76                                                            
CONECT   82   75   83                                                       
CONECT   83   82   84                                                       
CONECT   84   83   85   89                                                  
CONECT   85   84   86   92                                                  
CONECT   86   85   87   91                                                  
CONECT   87   86   88   90                                                  
CONECT   88   87   89                                                       
CONECT   89   88   84                                                       
CONECT   90   87                                                            
CONECT   91   86                                                            
CONECT   92   85   93                                                       
CONECT   93   92   94   98                                                  
CONECT   94   93   95  101                                                  
CONECT   95   94   96  100                                                  
CONECT   96   95   97   99                                                  
CONECT   97   96   98                                                       
CONECT   98   97   93                                                       
CONECT   99   96                                                            
CONECT  100   95                                                            
CONECT  101   94                                                            
MASTER        0    0    0    0    0    0    0    0  101    0  224    0
END

View in JSmol

Synonyms

Value

Source

Generator

Chemical Formula

C₆₈H₁₁₀O₃₃

Average Mass

1455.5950 Da

Monoisotopic Mass

1454.69294 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]2OC(=O)[C@]23CCC(C)(C)C[C@H]2C2=CC[C@@H]4[C@@]5(C)CC[C@H](O[C@@H]6O[C@H](CO[C@H]7OC[C@H](O)[C@@H](O)[C@H]7O[C@@H]7OC[C@@H](O)[C@H](O)[C@H]7O)[C@@H](O)[C@H](O)[C@H]6O)C(C)(C)[C@@H]5CC[C@@]4(C)[C@]2(C)CC3)[C@H](O)[C@H](O)[C@H]1O[C@@H]1OC[C@@H](O)[C@H](O[C@@H]2OC[C@@H](O)[C@H](O)[C@H]2O)[C@H]1O

InChI Identifier

InChI=1S/C68H110O33/c1-26-51(97-57-50(86)52(32(73)24-90-57)98-55-46(82)38(74)29(70)21-88-55)45(81)49(85)58(93-26)100-54-44(80)41(77)33(20-69)94-61(54)101-62(87)68-17-15-63(2,3)19-28(68)27-9-10-36-65(6)13-12-37(64(4,5)35(65)11-14-67(36,8)66(27,7)16-18-68)96-59-48(84)43(79)42(78)34(95-59)25-92-60-53(40(76)31(72)23-91-60)99-56-47(83)39(75)30(71)22-89-56/h9,26,28-61,69-86H,10-25H2,1-8H3/t26-,28-,29+,30+,31-,32+,33+,34+,35-,36+,37-,38-,39-,40+,41+,42+,43-,44-,45-,46+,47+,48+,49+,50+,51-,52-,53+,54+,55-,56-,57-,58-,59-,60+,61-,65-,66+,67+,68-/m0/s1

InChI Key

YEFIMTZGZGDHKG-ARMDYYPSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Gleditsia sinensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Triterpene saponins

Alternative Parents

Substituents

Triterpene saponin
Triterpenoid
Oligosaccharide
Fatty acyl glycoside
O-glycosyl compound
Glycosyl compound
Fatty acyl
Oxane
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.22	ALOGPS
logP	-2.7	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	11.61	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	32	ChemAxon
Hydrogen Donor Count	18	ChemAxon
Polar Surface Area	510.43 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	335.14 m³·mol⁻¹	ChemAxon
Polarizability	149.99 Å³	ChemAxon
Number of Rings	12	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

154496665

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (-)-Gleditsioside I (NP0076593)

MOL for NP0076593 ((-)-Gleditsioside I)

3D MOL for NP0076593 ((-)-Gleditsioside I)

3D SDF for NP0076593 ((-)-Gleditsioside I)

3D-SDF for NP0076593 ((-)-Gleditsioside I)

PDB for NP0076593 ((-)-Gleditsioside I)

3D PDB for NP0076593 ((-)-Gleditsioside I)

SMILES for NP0076593 ((-)-Gleditsioside I)

INCHI for NP0076593 ((-)-Gleditsioside I)

Structure for NP0076593 ((-)-Gleditsioside I)

3D Structure for NP0076593 ((-)-Gleditsioside I)