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Record Information
Version2.0
Created at2022-04-28 21:31:17 UTC
Updated at2022-04-28 21:31:17 UTC
NP-MRD IDNP0076381
Secondary Accession NumbersNone
Natural Product Identification
Common NameCyclocinamide B
DescriptionCyclocinamide B belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. Cyclocinamide B is found in Corticium sp. Cyclocinamide B was first documented in 2007 (PMID: 17391049). Based on a literature review very few articles have been published on cyclocinamide B (PMID: 26120208).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC29H32BrCl2N9O8
Average Mass785.4300 Da
Monoisotopic Mass783.09343 Da
IUPAC NameN-[(3R,6S,10R,13S)-10-[(5-bromo-1H-indol-3-yl)methyl]-3-(carbamoylmethyl)-13-hydroxy-2,5,9,12-tetraoxo-1,4,8,11-tetraazacyclotetradecan-6-yl]-2-[(4,5-dichloro-1-methyl-1H-pyrrol-2-yl)formamido]acetamide
Traditional NameN-[(3R,6S,10R,13S)-10-[(5-bromo-1H-indol-3-yl)methyl]-3-(carbamoylmethyl)-13-hydroxy-2,5,9,12-tetraoxo-1,4,8,11-tetraazacyclotetradecan-6-yl]-2-[(4,5-dichloro-1-methylpyrrol-2-yl)formamido]acetamide
CAS Registry NumberNot Available
SMILES
CN1C(Cl)=C(Cl)C=C1C(=O)NCC(=O)N[C@H]1CNC(=O)[C@@H](CC2=CNC3=CC=C(Br)C=C23)NC(=O)[C@@H](O)CNC(=O)[C@@H](CC(N)=O)NC1=O
InChI Identifier
InChI=1S/C29H32BrCl2N9O8/c1-41-20(6-15(31)24(41)32)28(48)37-11-23(44)38-19-9-35-25(45)17(4-12-8-34-16-3-2-13(30)5-14(12)16)40-29(49)21(42)10-36-26(46)18(7-22(33)43)39-27(19)47/h2-3,5-6,8,17-19,21,34,42H,4,7,9-11H2,1H3,(H2,33,43)(H,35,45)(H,36,46)(H,37,48)(H,38,44)(H,39,47)(H,40,49)/t17-,18-,19+,21+/m1/s1
InChI KeyNQEPESITNWAAHG-BNDYYXHWSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Corticium sp. (in: Fungi)Fungi
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassHybrid peptides
Direct ParentHybrid peptides
Alternative Parents
Substituents
  • Cyclic hybrid peptide
  • Alpha-oligopeptide
  • N-acyl-alpha amino acid or derivatives
  • Macrolactam
  • Alpha-amino acid amide
  • Beta amino acid or derivatives
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • 3-alkylindole
  • Indole or derivatives
  • Indole
  • 2-heteroaryl carboxamide
  • Pyrrole-2-carboxamide
  • Pyrrole-2-carboxylic acid or derivatives
  • N-methylpyrrole
  • Aryl bromide
  • Substituted pyrrole
  • Benzenoid
  • Aryl halide
  • Aryl chloride
  • Pyrrole
  • Heteroaromatic compound
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Primary carboxylic acid amide
  • Lactam
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Azacycle
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Alcohol
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Organochloride
  • Organohalogen compound
  • Organobromide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.27ALOGPS
logP-2.6ChemAxon
logS-4.5ALOGPS
pKa (Strongest Acidic)10.42ChemAxon
pKa (Strongest Basic)-3.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area258.64 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity177.18 m³·mol⁻¹ChemAxon
Polarizability70.72 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00038890
Chemspider ID17612675
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound16679811
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Curzon SS, Garcia JM, Konopelski JP: Total Synthesis of Nominal Cyclocinamide B and Investigation into the Identity of the Cyclocinamides. Tetrahedron Lett. 2015 Jun 3;56(23):2991-2994. doi: 10.1016/j.tetlet.2014.09.087. [PubMed:26120208 ]
  2. Laird DW, LaBarbera DV, Feng X, Bugni TS, Harper MK, Ireland CM: Halogenated cyclic peptides isolated from the sponge Corticium sp. J Nat Prod. 2007 May;70(5):741-6. doi: 10.1021/np060489v. Epub 2007 Mar 29. [PubMed:17391049 ]