NP-MRD: Showing NP-Card for Copteroside F (NP0076349)

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Record Information

Version

2.0

Created at

2022-04-28 21:29:49 UTC

Updated at

2022-04-28 21:29:49 UTC

NP-MRD ID

NP0076349

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Copteroside F

Description

(2S,3R,4S,5S,6S)-6-{[(3S,4R,4aR,6aS,6bS,8aR,9S,12aS,14aS,14bS)-4-(hydroxymethyl)-4,6a,6b,11,11,14b-hexamethyl-9-({[(2R,3S,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}carbonyl)-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,14,14a,14b-icosahydropicen-3-yl]oxy}-4-hydroxy-3-{[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-{[(2S,3S,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}oxane-2-carboxylic acid belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Copteroside F is found in Climacoptera transoxana. Based on a literature review very few articles have been published on (2S,3R,4S,5S,6S)-6-{[(3S,4R,4aR,6aS,6bS,8aR,9S,12aS,14aS,14bS)-4-(hydroxymethyl)-4,6a,6b,11,11,14b-hexamethyl-9-({[(2R,3S,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}carbonyl)-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,14,14a,14b-icosahydropicen-3-yl]oxy}-4-hydroxy-3-{[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-{[(2S,3S,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}oxane-2-carboxylic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282223292D          

 75 83  0  0  1  0            999 V2000
    6.0770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2520    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4105   -2.4454    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8230   -1.7309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6480   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0605   -2.4454    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6480   -3.1599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    2.6907    1.9475    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    7.7270    2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3145    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.7270    3.9849    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5520    3.9849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9645    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.5520    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7895    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2020    3.9849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3145    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1058   -1.1265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7766   -0.7392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
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 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  4 14  1  1  0  0  0
 12 15  1  1  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
 18 17  1  6  0  0  0
 18 19  1  0  0  0  0
 10 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 18 23  1  0  0  0  0
 23 24  1  1  0  0  0
 24 25  1  0  0  0  0
 23 26  1  6  0  0  0
 22 27  1  6  0  0  0
 28 27  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 28 33  1  0  0  0  0
 33 34  1  6  0  0  0
 35 34  1  1  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
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 38 41  1  1  0  0  0
 37 42  1  1  0  0  0
 36 43  1  1  0  0  0
 32 44  1  6  0  0  0
 31 45  1  6  0  0  0
 46 45  1  1  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
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 49 54  1  1  0  0  0
 30 55  1  6  0  0  0
 55 56  2  0  0  0  0
 55 57  1  0  0  0  0
 19 58  1  1  0  0  0
 11 59  1  1  0  0  0
  3 60  1  1  0  0  0
 60 61  2  0  0  0  0
 60 62  1  0  0  0  0
 63 62  1  6  0  0  0
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 69 70  1  0  0  0  0
 66 71  1  1  0  0  0
 65 72  1  6  0  0  0
 64 73  1  1  0  0  0
  1 74  1  0  0  0  0
  1 75  1  0  0  0  0
M  END

     RDKit          3D

157165  0  0  0  0  0  0  0  0999 V2000
    8.3018   -1.9407    3.3697 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0667   -2.1477    2.4657 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0797   -2.8574    3.3864 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3437   -3.0718    1.3557 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0481   -2.6450   -0.0310 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.2051   -2.0083   -0.6711 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7702   -2.4727   -1.7135 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.7227   -0.8659   -0.1511 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8114   -0.1282   -0.6242 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.4789    1.1490   -1.0477 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4919    1.5799   -1.8987 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.3406    1.0716   -3.2968 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1464    1.4716   -3.8902 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8693    1.1629   -1.4128 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.3409    0.0456   -2.1066 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8988    0.9454    0.0843 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.5885    2.1495    0.6981 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.9002   -0.1434    0.4164 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.5635   -1.3866    0.3539 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7953   -1.8623   -0.0429 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3131   -1.4356   -1.3851 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9237   -0.8374   -1.3489 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8733    0.2992   -0.3592 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -9.4907    0.5501   -1.9053 C   0  0  2  0  0  0  0  0  0  0  0  0
  -10.1866    1.6998   -1.6215 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3386    1.7896   -2.3665 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2089    0.5692   -2.3001 C   0  0  2  0  0  0  0  0  0  0  0  0
  -13.5437    0.8584   -2.0316 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.1257    0.8949    2.7166 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6152    1.6647   -0.6013 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5670    1.5015   -2.1065 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0984    3.1133   -0.4076 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2578    3.3748   -1.0920 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282223292D          

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    9.7895    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2020    3.9849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3145    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1058   -1.1265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7766   -0.7392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  4 14  1  1  0  0  0
 12 15  1  1  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
 18 17  1  6  0  0  0
 18 19  1  0  0  0  0
 10 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 18 23  1  0  0  0  0
 23 24  1  1  0  0  0
 24 25  1  0  0  0  0
 23 26  1  6  0  0  0
 22 27  1  6  0  0  0
 28 27  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 28 33  1  0  0  0  0
 33 34  1  6  0  0  0
 35 34  1  1  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 35 40  1  0  0  0  0
 38 41  1  1  0  0  0
 37 42  1  1  0  0  0
 36 43  1  1  0  0  0
 32 44  1  6  0  0  0
 31 45  1  6  0  0  0
 46 45  1  1  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 46 51  1  0  0  0  0
 51 52  1  6  0  0  0
 50 53  1  1  0  0  0
 49 54  1  1  0  0  0
 30 55  1  6  0  0  0
 55 56  2  0  0  0  0
 55 57  1  0  0  0  0
 19 58  1  1  0  0  0
 11 59  1  1  0  0  0
  3 60  1  1  0  0  0
 60 61  2  0  0  0  0
 60 62  1  0  0  0  0
 63 62  1  6  0  0  0
 63 64  1  0  0  0  0
 64 65  1  0  0  0  0
 65 66  1  0  0  0  0
 66 67  1  0  0  0  0
 67 68  1  0  0  0  0
 63 68  1  0  0  0  0
 67 69  1  1  0  0  0
 69 70  1  0  0  0  0
 66 71  1  1  0  0  0
 65 72  1  6  0  0  0
 64 73  1  1  0  0  0
  1 74  1  0  0  0  0
  1 75  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0076349

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)C[C@@H]([C@@H]2CC[C@]3(C)C(=CC[C@H]4[C@]5(C)CC[C@H](O[C@H]6O[C@@H]([C@H](O[C@@H]7OC[C@H](O)[C@H](O)[C@H]7O)[C@H](O)[C@@H]6O[C@@H]6OC[C@H](O)[C@H](O)[C@@H]6O)C(O)=O)[C@@](C)(CO)[C@@H]5CC[C@]34C)[C@H]2C1)C(=O)O[C@H]1O[C@H](CO)[C@H](O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C52H82O23/c1-48(2)15-22-21(23(16-48)43(67)75-46-37(63)34(60)33(59)27(17-53)70-46)9-13-51(5)24(22)7-8-29-49(3)12-11-30(50(4,20-54)28(49)10-14-52(29,51)6)71-47-40(73-45-36(62)32(58)26(56)19-69-45)38(64)39(41(74-47)42(65)66)72-44-35(61)31(57)25(55)18-68-44/h7,21-23,25-41,44-47,53-64H,8-20H2,1-6H3,(H,65,66)/t21-,22+,23+,25+,26+,27-,28-,29+,30+,31+,32+,33+,34-,35-,36+,37+,38+,39-,40+,41+,44+,45+,46-,47+,49-,50+,51-,52+/m1/s1

> <INCHI_KEY>
BUAUZVWHAWJEOO-JBKXCMGUSA-N

> <FORMULA>
C52H82O23

> <MOLECULAR_WEIGHT>
1075.205

> <EXACT_MASS>
1074.5246889

> <JCHEM_ACCEPTOR_COUNT>
22

> <JCHEM_ATOM_COUNT>
157

> <JCHEM_AVERAGE_POLARIZABILITY>
111.91192149916449

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
13

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5S,6S)-6-{[(3S,4R,4aR,6aS,6bS,8aR,9S,12aS,14aS,14bS)-4-(hydroxymethyl)-4,6a,6b,11,11,14b-hexamethyl-9-({[(2R,3S,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}carbonyl)-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,14,14a,14b-icosahydropicen-3-yl]oxy}-4-hydroxy-3-{[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-{[(2S,3S,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}oxane-2-carboxylic acid

> <ALOGPS_LOGP>
0.54

> <JCHEM_LOGP>
-0.9545635373333347

> <ALOGPS_LOGS>
-3.12

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
9

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.796659782450014

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.3870096737454367

> <JCHEM_PKA_STRONGEST_BASIC>
-3.67268797929672

> <JCHEM_POLAR_SURFACE_AREA>
370.9700000000001

> <JCHEM_REFRACTIVITY>
253.06030000000015

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.14e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5S,6S)-6-{[(3S,4R,4aR,6aS,6bS,8aR,9S,12aS,14aS,14bS)-4-(hydroxymethyl)-4,6a,6b,11,11,14b-hexamethyl-9-({[(2R,3S,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}carbonyl)-2,3,4a,5,6,7,8,8a,9,10,12,12a,14,14a-tetradecahydro-1H-picen-3-yl]oxy}-4-hydroxy-3-{[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-{[(2S,3S,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}oxane-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      11.344  -0.564   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.114   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.344   2.104   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.804   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.034   0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.804  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.494   3.437   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.034   3.437   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.414   3.437   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.874   3.437   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.510   3.643   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -0.850   4.366   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -0.742   2.920   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -1.746   0.770   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -2.516  -0.564   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -1.746  -1.897   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -2.516  -3.231   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -4.056  -3.231   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -4.826  -1.897   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -4.056  -0.564   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -4.826   0.770   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -4.056   2.104   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -4.826   3.437   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -4.056   4.771   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -2.516   4.771   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -1.746   3.437   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -2.516   2.104   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0      -1.746   6.105   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0      -4.826   6.105   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0      -6.366   3.437   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0      -6.366  -1.897   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0      -4.826  -4.565   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      -6.366  -4.565   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      -7.136  -3.231   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      -8.676  -3.231   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -9.446  -4.565   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      -8.676  -5.898   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      -7.136  -5.898   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      -6.366  -7.232   0.000  0.00  0.00           O+0
HETATM   53  O   UNK     0      -9.446  -7.232   0.000  0.00  0.00           O+0
HETATM   54  O   UNK     0     -10.986  -4.565   0.000  0.00  0.00           O+0
HETATM   55  C   UNK     0      -1.746  -4.565   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0      -2.516  -5.898   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0      -0.206  -4.565   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0       3.644  -0.564   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       5.023   3.635   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      12.114   3.437   0.000  0.00  0.00           C+0
HETATM   61  O   UNK     0      11.344   4.771   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0      13.654   3.437   0.000  0.00  0.00           O+0
HETATM   63  C   UNK     0      14.424   4.771   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      13.654   6.105   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      14.424   7.438   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      15.964   7.438   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      16.734   6.105   0.000  0.00  0.00           C+0
HETATM   68  O   UNK     0      15.964   4.771   0.000  0.00  0.00           O+0
HETATM   69  C   UNK     0      18.274   6.105   0.000  0.00  0.00           C+0
HETATM   70  O   UNK     0      19.044   7.438   0.000  0.00  0.00           O+0
HETATM   71  O   UNK     0      16.734   8.772   0.000  0.00  0.00           O+0
HETATM   72  O   UNK     0      13.654   8.772   0.000  0.00  0.00           O+0
HETATM   73  O   UNK     0      12.114   6.105   0.000  0.00  0.00           O+0
HETATM   74  C   UNK     0      11.397  -2.103   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0      12.650  -1.380   0.000  0.00  0.00           C+0
CONECT    1    2    6   74   75                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   60                                                  
CONECT    4    3    5   14                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   12                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   19                                                  
CONECT   11   10   12   16   59                                             
CONECT   12   11    7   13   15                                             
CONECT   13   12   14                                                       
CONECT   14   13    4                                                       
CONECT   15   12                                                            
CONECT   16   11   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   23                                                  
CONECT   19   18   10   20   58                                             
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   27                                                  
CONECT   23   22   18   24   26                                             
CONECT   24   23   25                                                       
CONECT   25   24                                                            
CONECT   26   23                                                            
CONECT   27   22   28                                                       
CONECT   28   27   29   33                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31   55                                                  
CONECT   31   30   32   45                                                  
CONECT   32   31   33   44                                                  
CONECT   33   32   28   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   40                                                  
CONECT   36   35   37   43                                                  
CONECT   37   36   38   42                                                  
CONECT   38   37   39   41                                                  
CONECT   39   38   40                                                       
CONECT   40   39   35                                                       
CONECT   41   38                                                            
CONECT   42   37                                                            
CONECT   43   36                                                            
CONECT   44   32                                                            
CONECT   45   31   46                                                       
CONECT   46   45   47   51                                                  
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50   54                                                  
CONECT   50   49   51   53                                                  
CONECT   51   50   46   52                                                  
CONECT   52   51                                                            
CONECT   53   50                                                            
CONECT   54   49                                                            
CONECT   55   30   56   57                                                  
CONECT   56   55                                                            
CONECT   57   55                                                            
CONECT   58   19                                                            
CONECT   59   11                                                            
CONECT   60    3   61   62                                                  
CONECT   61   60                                                            
CONECT   62   60   63                                                       
CONECT   63   62   64   68                                                  
CONECT   64   63   65   73                                                  
CONECT   65   64   66   72                                                  
CONECT   66   65   67   71                                                  
CONECT   67   66   68   69                                                  
CONECT   68   67   63                                                       
CONECT   69   67   70                                                       
CONECT   70   69                                                            
CONECT   71   66                                                            
CONECT   72   65                                                            
CONECT   73   64                                                            
CONECT   74    1                                                            
CONECT   75    1                                                            
MASTER        0    0    0    0    0    0    0    0   75    0  166    0
END

View in JSmol

Synonyms

Value	Source
(2S,3R,4S,5S,6S)-6-{[(3S,4R,4ar,6as,6BS,8ar,9S,12as,14as,14BS)-4-(hydroxymethyl)-4,6a,6b,11,11,14b-hexamethyl-9-({[(2R,3S,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}carbonyl)-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,14,14a,14b-icosahydropicen-3-yl]oxy}-4-hydroxy-3-{[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-{[(2S,3S,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy}oxane-2-carboxylate	Generator

Chemical Formula

C₅₂H₈₂O₂₃

Average Mass

1075.2050 Da

Monoisotopic Mass

1074.52469 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

CC1(C)C[C@@H]([C@@H]2CC[C@]3(C)C(=CC[C@H]4[C@]5(C)CC[C@H](O[C@H]6O[C@@H]([C@H](O[C@@H]7OC[C@H](O)[C@H](O)[C@H]7O)[C@H](O)[C@@H]6O[C@@H]6OC[C@H](O)[C@H](O)[C@@H]6O)C(O)=O)[C@@](C)(CO)[C@@H]5CC[C@]34C)[C@H]2C1)C(=O)O[C@H]1O[C@H](CO)[C@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C52H82O23/c1-48(2)15-22-21(23(16-48)43(67)75-46-37(63)34(60)33(59)27(17-53)70-46)9-13-51(5)24(22)7-8-29-49(3)12-11-30(50(4,20-54)28(49)10-14-52(29,51)6)71-47-40(73-45-36(62)32(58)26(56)19-69-45)38(64)39(41(74-47)42(65)66)72-44-35(61)31(57)25(55)18-68-44/h7,21-23,25-41,44-47,53-64H,8-20H2,1-6H3,(H,65,66)/t21-,22+,23+,25+,26+,27-,28-,29+,30+,31+,32+,33+,34-,35-,36+,37+,38+,39-,40+,41+,44+,45+,46-,47+,49-,50+,51-,52+/m1/s1

InChI Key

BUAUZVWHAWJEOO-JBKXCMGUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Climacoptera transoxana	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Oligosaccharide
Steroid
Fatty acyl glycoside
O-glucuronide
1-o-glucuronide
Glucuronic acid or derivatives
O-glycosyl compound
Glycosyl compound
Fatty acyl
Pyran
Oxane
Dicarboxylic acid or derivatives
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Carboxylic acid
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.54	ALOGPS
logP	-0.95	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	3.39	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	22	ChemAxon
Hydrogen Donor Count	13	ChemAxon
Polar Surface Area	370.97 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	253.06 m³·mol⁻¹	ChemAxon
Polarizability	111.91 Å³	ChemAxon
Number of Rings	9	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163103589

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Copteroside F (NP0076349)

MOL for NP0076349 (Copteroside F)

3D MOL for NP0076349 (Copteroside F)

3D SDF for NP0076349 (Copteroside F)

3D-SDF for NP0076349 (Copteroside F)

PDB for NP0076349 (Copteroside F)

3D PDB for NP0076349 (Copteroside F)

SMILES for NP0076349 (Copteroside F)

INCHI for NP0076349 (Copteroside F)

Structure for NP0076349 (Copteroside F)

3D Structure for NP0076349 (Copteroside F)