NP-MRD: Showing NP-Card for (-)-Markhamioside E (NP0075557)

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Record Information

Version

2.0

Created at

2022-04-28 20:49:33 UTC

Updated at

2022-04-28 20:49:34 UTC

NP-MRD ID

NP0075557

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Markhamioside E

Description

(2R,3S,4S,5S,6R)-2-[(acetyloxy)methyl]-6-{[(3,4-dihydroxyphenyl)methoxy]methyl}-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-3-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring. (-)-Markhamioside E is found in Markhamia stipulata . Based on a literature review very few articles have been published on (2R,3S,4S,5S,6R)-2-[(acetyloxy)methyl]-6-{[(3,4-dihydroxyphenyl)methoxy]methyl}-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-3-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282222492D          

 58 62  0  0  1  0            999 V2000
    2.1434   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -6.6000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -9.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -9.9000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2868   -6.6000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2868   -7.4250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724   -7.8375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -7.4250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -6.6000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -5.3625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4862   -6.0299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  4 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 15 20  1  0  0  0  0
 19 21  1  0  0  0  0
 18 22  1  0  0  0  0
  3 23  1  1  0  0  0
 24 23  1  1  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 24 29  1  0  0  0  0
 28 30  1  1  0  0  0
 30 31  1  0  0  0  0
 27 32  1  1  0  0  0
 26 33  1  1  0  0  0
 25 34  1  6  0  0  0
  2 35  1  1  0  0  0
 36 35  1  1  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 36 41  1  0  0  0  0
 41 42  1  6  0  0  0
 40 43  1  6  0  0  0
 39 44  1  1  0  0  0
 38 45  1  6  0  0  0
  1 46  1  6  0  0  0
 46 47  1  0  0  0  0
 47 48  2  0  0  0  0
 47 49  1  0  0  0  0
 49 50  2  0  0  0  0
 50 51  1  0  0  0  0
 51 52  2  0  0  0  0
 52 53  1  0  0  0  0
 53 54  2  0  0  0  0
 54 55  1  0  0  0  0
 55 56  2  0  0  0  0
 51 56  1  0  0  0  0
 54 57  1  0  0  0  0
 53 58  1  0  0  0  0
M  END

     RDKit          3D

106110  0  0  0  0  0  0  0  0999 V2000
    4.6998    1.2488    2.2208 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7322    2.2661    1.7638 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7407    3.4605    2.1312 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7448    1.8877    0.8699 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7742    2.7905    0.3766 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8411    2.0730   -0.5744 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6203    1.5794   -1.6092 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8388    1.0833   -2.6850 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4669    2.1726   -3.6133 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2280    1.8424   -4.6895 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1202    1.1353   -5.7375 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4814   -0.2767   -5.5955 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7951   -0.6915   -5.6987 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0847   -2.0252   -5.5974 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1050   -3.0034   -5.3921 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4728   -4.3192   -5.3018 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2007   -2.5845   -5.2901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2178   -3.4952   -5.0872 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4987   -1.2206   -5.3934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3507    0.3191   -2.1135 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3519    1.2923   -1.9133 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5218    0.9617   -2.5681 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0104    1.9847   -3.3601 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3691    1.7901   -3.6641 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7409    2.6499   -4.8450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1024    2.4344   -5.1238 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2213    2.2122   -2.4886 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6600    3.5127   -2.5938 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3326    2.0234   -1.2509 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4015    3.0611   -1.1600 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5827    0.7132   -1.4912 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4729   -0.2839   -1.8699 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1651   -0.2096   -0.7649 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4297   -1.3497   -0.3619 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4710   -2.3912   -0.2162 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0186   -3.4126   -1.0594 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9360   -4.2112   -0.4506 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8372   -4.8478   -1.4554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2071   -5.1912    0.4397 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0640   -5.6683    1.4453 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9374   -4.4058    1.0652 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0776   -4.5463    0.2825 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5552   -2.9243    1.2074 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6201   -2.3433    1.8842 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0469    0.9855    0.1163 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3138    0.8065    1.4603 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5464    1.0210    2.5095 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6824    1.4216    2.1956 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1356    0.7888    3.8911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9383    0.9914    4.9118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5970    0.7807    6.3135 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5510    1.0641    7.2840 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3191    0.9012    8.6369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1091    0.4449    9.0506 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1439    0.2738   10.4179 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8508    0.1580    8.1013 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1010   -0.3120    8.4951 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6050    0.3253    6.7542 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2167    0.2723    2.3086 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0525    1.5449    3.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5418    1.1078    1.4847 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1868    3.2542    1.2186 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2984    3.6306   -0.1201 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1943    2.8633   -1.0161 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4876    0.3534   -3.1730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0348    3.0081   -3.0198 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4772    2.6212   -3.9674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7252    1.1219   -6.5305 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9386    1.6601   -6.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6067    0.0212   -5.8591 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1191   -2.3375   -5.6804 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8726   -5.0924   -5.1594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0399   -4.4718   -5.0107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5329   -0.9289   -5.3076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7745   -0.4348   -2.7344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3952   -0.0008   -3.1151 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5491    0.7346   -3.9729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5942    3.7198   -4.6400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1924    2.3486   -5.7708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5048    3.2100   -5.5880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0990    1.5569   -2.3583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2771    4.0849   -1.8837 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9149    1.9787   -0.3267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7664    3.7536   -0.5609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1431    0.3987   -0.5347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3744   -0.1254   -1.4662 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2725   -0.4206   -0.8770 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5135   -2.0969   -0.4570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5898   -3.6119    0.2463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3734   -5.0170   -2.4473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2148   -5.8592   -1.1231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6935   -4.1519   -1.6377 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1552   -6.0727   -0.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7613   -6.5196    1.8305 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1382   -4.8340    2.0618 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9927   -5.3265   -0.3194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4028   -2.8598    1.7281 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282222492D          

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  1 46  1  6  0  0  0
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 54 57  1  0  0  0  0
 53 58  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0075557

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1O[C@@H](O[C@H]2[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](COCC3=CC=C(O)C(O)=C3)O[C@H](COC(C)=O)[C@@H]2OC(=O)\C=C\C2=CC(O)=C(O)C=C2)[C@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C37H48O21/c1-15-27(45)29(47)31(49)36(53-15)58-35-33(56-26(44)8-5-17-3-6-19(40)21(42)9-17)25(14-52-16(2)39)54-24(13-51-12-18-4-7-20(41)22(43)10-18)34(35)57-37-32(50)30(48)28(46)23(11-38)55-37/h3-10,15,23-25,27-38,40-43,45-50H,11-14H2,1-2H3/b8-5+/t15-,23+,24+,25+,27-,28-,29+,30-,31+,32+,33-,34-,35+,36-,37-/m0/s1

> <INCHI_KEY>
XLZBZHHNPMBBNW-NVBKABIASA-N

> <FORMULA>
C37H48O21

> <MOLECULAR_WEIGHT>
828.77

> <EXACT_MASS>
828.268808566

> <JCHEM_ACCEPTOR_COUNT>
19

> <JCHEM_ATOM_COUNT>
106

> <JCHEM_AVERAGE_POLARIZABILITY>
80.91033014333323

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
11

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4S,5S,6R)-2-[(acetyloxy)methyl]-6-{[(3,4-dihydroxyphenyl)methoxy]methyl}-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-3-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate

> <ALOGPS_LOGP>
0.77

> <JCHEM_LOGP>
-1.0650570803333324

> <ALOGPS_LOGS>
-2.48

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.515350276086737

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.914246739517457

> <JCHEM_PKA_STRONGEST_BASIC>
-3.676505489059249

> <JCHEM_POLAR_SURFACE_AREA>
330.51

> <JCHEM_REFRACTIVITY>
190.14550000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.73e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4S,5S,6R)-2-[(acetyloxy)methyl]-6-{[(3,4-dihydroxyphenyl)methoxy]methyl}-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-3-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.001 -10.010   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.667  -9.240   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.000  -7.700   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -2.667  -7.700   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.001 -11.550   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.667 -12.320   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.667 -13.860   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334 -14.630   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.000 -13.860   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.334 -14.630   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.334 -16.170   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.000 -16.940   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.334 -16.170   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -0.000 -18.480   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      -2.667 -16.940   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       6.668 -10.010   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       6.668 -11.550   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.002 -12.320   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       8.002 -13.860   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.668 -14.630   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.335 -13.860   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       5.335 -12.320   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       4.001 -14.630   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       4.001 -16.170   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       6.668 -16.170   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0       9.336 -14.630   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0       9.336 -11.550   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0       6.668  -6.930   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       8.002  -9.240   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0       9.336 -10.010   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0       9.336  -5.390   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0      12.003  -6.930   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0      12.003 -10.010   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      10.241 -11.256   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0       4.001  -5.390   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0       1.334  -5.390   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   58  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
CONECT    1    2    6   46                                                  
CONECT    2    1    3   35                                                  
CONECT    3    2    4   23                                                  
CONECT    4    3    5   12                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    4   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   22                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19   15                                                       
CONECT   21   19                                                            
CONECT   22   18                                                            
CONECT   23    3   24                                                       
CONECT   24   23   25   29                                                  
CONECT   25   24   26   34                                                  
CONECT   26   25   27   33                                                  
CONECT   27   26   28   32                                                  
CONECT   28   27   29   30                                                  
CONECT   29   28   24                                                       
CONECT   30   28   31                                                       
CONECT   31   30                                                            
CONECT   32   27                                                            
CONECT   33   26                                                            
CONECT   34   25                                                            
CONECT   35    2   36                                                       
CONECT   36   35   37   41                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39   45                                                  
CONECT   39   38   40   44                                                  
CONECT   40   39   41   43                                                  
CONECT   41   40   36   42                                                  
CONECT   42   41                                                            
CONECT   43   40                                                            
CONECT   44   39                                                            
CONECT   45   38                                                            
CONECT   46    1   47                                                       
CONECT   47   46   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52   56                                                  
CONECT   52   51   53                                                       
CONECT   53   52   54   58                                                  
CONECT   54   53   55   57                                                  
CONECT   55   54   56                                                       
CONECT   56   55   51                                                       
CONECT   57   54                                                            
CONECT   58   53                                                            
MASTER        0    0    0    0    0    0    0    0   58    0  124    0
END

View in JSmol

Synonyms

Value	Source
(2R,3S,4S,5S,6R)-2-[(Acetyloxy)methyl]-6-{[(3,4-dihydroxyphenyl)methoxy]methyl}-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-3-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoic acid	Generator

Chemical Formula

C₃₇H₄₈O₂₁

Average Mass

828.7700 Da

Monoisotopic Mass

828.26881 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@@H]1O[C@@H](O[C@H]2[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](COCC3=CC=C(O)C(O)=C3)O[C@H](COC(C)=O)[C@@H]2OC(=O)\C=C\C2=CC(O)=C(O)C=C2)[C@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C37H48O21/c1-15-27(45)29(47)31(49)36(53-15)58-35-33(56-26(44)8-5-17-3-6-19(40)21(42)9-17)25(14-52-16(2)39)54-24(13-51-12-18-4-7-20(41)22(43)10-18)34(35)57-37-32(50)30(48)28(46)23(11-38)55-37/h3-10,15,23-25,27-38,40-43,45-50H,11-14H2,1-2H3/b8-5+/t15-,23+,24+,25+,27-,28-,29+,30-,31+,32+,33-,34-,35+,36-,37-/m0/s1

InChI Key

XLZBZHHNPMBBNW-NVBKABIASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Markhamia stipulata	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Hydroxycinnamic acids and derivatives

Direct Parent

Coumaric acids and derivatives

Alternative Parents

Substituents

Cinnamic acid ester
Coumaric acid or derivatives
O-glycosyl compound
Glycosyl compound
Disaccharide
C-glycosyl compound
Benzylether
Styrene
Catechol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Fatty acid ester
Fatty acyl
Benzenoid
Oxane
Dicarboxylic acid or derivatives
Monocyclic benzene moiety
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Ether
Dialkyl ether
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.77	ALOGPS
logP	-1.1	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	8.91	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	19	ChemAxon
Hydrogen Donor Count	11	ChemAxon
Polar Surface Area	330.51 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	190.15 m³·mol⁻¹	ChemAxon
Polarizability	80.91 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163106577

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Markhamioside E (NP0075557)

MOL for NP0075557 ((-)-Markhamioside E)

3D MOL for NP0075557 ((-)-Markhamioside E)

3D SDF for NP0075557 ((-)-Markhamioside E)

3D-SDF for NP0075557 ((-)-Markhamioside E)

PDB for NP0075557 ((-)-Markhamioside E)

3D PDB for NP0075557 ((-)-Markhamioside E)

SMILES for NP0075557 ((-)-Markhamioside E)

INCHI for NP0075557 ((-)-Markhamioside E)

Structure for NP0075557 ((-)-Markhamioside E)

3D Structure for NP0075557 ((-)-Markhamioside E)