NP-MRD: Showing NP-Card for 2,3,4,5-Tetramethoxyxanthone (NP0074913)

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Record Information

Version

2.0

Created at

2022-04-28 20:13:11 UTC

Updated at

2022-04-28 20:13:11 UTC

NP-MRD ID

NP0074913

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2,3,4,5-Tetramethoxyxanthone

Description

2,3,4,5-Tetramethoxyxanthone belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring. 2,3,4,5-Tetramethoxyxanthone is found in Halenia campanulata. 2,3,4,5-Tetramethoxyxanthone was first documented in 2008 (PMID: 18704326). Based on a literature review a small amount of articles have been published on 2,3,4,5-tetramethoxyxanthone (PMID: 26580586) (PMID: 24216090) (PMID: 22934421).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
   -4.5253    2.0381   -1.3106 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1649    1.0500   -0.3484 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8271    0.7472   -0.1413 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8524    1.4004   -0.8638 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5308    1.0871   -0.6449 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4495    1.7474   -1.3750 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1301    2.6150   -2.2195 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7504    1.3826   -1.1032 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7441    2.0280   -1.8192 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0674    1.7161   -1.6020 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3428    0.7522   -0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3842    0.0962    0.0662 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6274   -0.8694    1.0141 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8678   -1.3500    1.4061 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0397    0.4186   -0.1601 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0835   -0.1822    0.5088 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1700    0.1328    0.2834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1848   -0.5132    1.0015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7867   -1.4629    1.9226 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6194   -2.8295    1.6192 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5138   -0.2131    0.7964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4630   -0.8850    1.5358 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0761   -2.0815    1.1651 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1926    3.0530   -1.0084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6011    2.0209   -1.5293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9672    1.7803   -2.2483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0685    2.1590   -1.6067 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4910    2.7781   -2.5510 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8570    2.2271   -2.1691 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3786    0.5081   -0.4879 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7648   -2.3989    1.8062 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6258   -1.3924    0.6211 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2699   -0.7212    2.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3179   -3.4878    2.1745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6941   -3.0305    0.5258 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4154   -3.1106    1.9594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6041   -2.9353    1.6946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1597   -2.0948    1.4470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9701   -2.1801    0.0521 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 13  1  0
 13 12  1  0
 12 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 18 21  1  0
 21 22  1  0
 22 23  1  0
 21  3  2  0
  3  2  1  0
  2  1  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
  8 15  1  0
  5 17  1  0
 14 31  1  0
 14 32  1  0
 14 33  1  0
 20 34  1  0
 20 35  1  0
 20 36  1  0
 23 37  1  0
 23 38  1  0
 23 39  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  4 27  1  0
  9 28  1  0
 10 29  1  0
 11 30  1  0
M  END


  Mrv1652304282222132D          

 23 25  0  0  0  0            999 V2000
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
  5 11  2  0  0  0  0
  8 12  1  0  0  0  0
 12 13  1  0  0  0  0
  2 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
  1 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 16 20  1  0  0  0  0
 20 21  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0074913

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C2OC3=C(OC)C(OC)=C(OC)C=C3C(=O)C2=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C17H16O6/c1-19-11-7-5-6-9-13(18)10-8-12(20-2)16(21-3)17(22-4)15(10)23-14(9)11/h5-8H,1-4H3

> <INCHI_KEY>
LCAXBFDUSYZXOC-UHFFFAOYSA-N

> <FORMULA>
C17H16O6

> <MOLECULAR_WEIGHT>
316.309

> <EXACT_MASS>
316.094688235

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
32.18879178418602

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,3,4,5-tetramethoxy-9H-xanthen-9-one

> <ALOGPS_LOGP>
2.52

> <JCHEM_LOGP>
2.328955157666667

> <ALOGPS_LOGS>
-3.89

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-3.7154920087795014

> <JCHEM_POLAR_SURFACE_AREA>
63.22000000000001

> <JCHEM_REFRACTIVITY>
82.66910000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.10e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,3,4,5-tetramethoxyxanthen-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       4.001   3.850   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       6.668  -2.310   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       9.336  -0.770   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       9.336   2.310   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       9.336   3.850   0.000  0.00  0.00           C+0
CONECT    1    2    7   17                                                  
CONECT    2    1    3   14                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   11                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6    1                                                       
CONECT    8    6    9   12                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    5                                                       
CONECT   12    8   13                                                       
CONECT   13   12                                                            
CONECT   14    2   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17   20                                                  
CONECT   17   16    1   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18                                                            
CONECT   20   16   21                                                       
CONECT   21   20                                                            
CONECT   22   15   23                                                       
CONECT   23   22                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   50    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₆O₆

Average Mass

316.3090 Da

Monoisotopic Mass

316.09469 Da

IUPAC Name

2,3,4,5-tetramethoxy-9H-xanthen-9-one

Traditional Name

2,3,4,5-tetramethoxyxanthen-9-one

CAS Registry Number

Not Available

SMILES

COC1=C2OC3=C(OC)C(OC)=C(OC)C=C3C(=O)C2=CC=C1

InChI Identifier

InChI=1S/C17H16O6/c1-19-11-7-5-6-9-13(18)10-8-12(20-2)16(21-3)17(22-4)15(10)23-14(9)11/h5-8H,1-4H3

InChI Key

LCAXBFDUSYZXOC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Halenia campanulata	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Xanthones

Alternative Parents

Substituents

Xanthone
Chromone
Anisole
Pyranone
Alkyl aryl ether
Benzenoid
Pyran
Heteroaromatic compound
Oxacycle
Ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.52	ALOGPS
logP	2.33	ChemAxon
logS	-3.9	ALOGPS
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	63.22 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	82.67 m³·mol⁻¹	ChemAxon
Polarizability	32.19 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00036449

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

129813473

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Waltenberger B, Liu R, Atanasov AG, Schwaiger S, Heiss EH, Dirsch VM, Stuppner H: Nonprenylated Xanthones from Gentiana lutea, Frasera caroliniensis, and Centaurium erythraea as Novel Inhibitors of Vascular Smooth Muscle Cell Proliferation. Molecules. 2015 Nov 13;20(11):20381-90. doi: 10.3390/molecules201119703. [PubMed:26580586 ]
Dibwe DF, Awale S, Kadota S, Morita H, Tezuka Y: Heptaoxygenated xanthones as anti-austerity agents from Securidaca longepedunculata. Bioorg Med Chem. 2013 Dec 15;21(24):7663-8. doi: 10.1016/j.bmc.2013.10.027. Epub 2013 Oct 30. [PubMed:24216090 ]
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Showing NP-Card for 2,3,4,5-Tetramethoxyxanthone (NP0074913)

MOL for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

3D MOL for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

3D SDF for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

3D-SDF for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

PDB for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

3D PDB for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

SMILES for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

INCHI for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

Structure for NP0074913 (2,3,4,5-Tetramethoxyxanthone)

3D Structure for NP0074913 (2,3,4,5-Tetramethoxyxanthone)