NP-MRD: Showing NP-Card for (7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside (NP0074846)

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Record Information

Version

2.0

Created at

2022-04-28 20:09:57 UTC

Updated at

2022-04-28 20:09:57 UTC

NP-MRD ID

NP0074846

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside

Description

Dehydrodiconiferyl alcohol 4-O-beta-D-glucopyranoside belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety. (7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside is found in Arum italicum, Boscia senegalensis, Cistanche tubulosa, Equisetum ramosissimum, Osmanthus fragrans and Clerodendrum inerme . (7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside was first documented in 2015 (PMID: 26084171). Based on a literature review a small amount of articles have been published on Dehydrodiconiferyl alcohol 4-O-beta-D-glucopyranoside.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282222092D          

 37 40  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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  Mrv1652304282222092D          

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 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
 28 29  1  6  0  0  0
 27 30  1  1  0  0  0
 26 31  1  6  0  0  0
 25 32  1  1  0  0  0
 32 33  1  0  0  0  0
  2 34  1  0  0  0  0
 34 35  2  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0074846

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C2O[C@@H]([C@@H](CO)C2=CC(\C=C\CO)=C1)C1=CC=C(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C(OC)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C26H32O11/c1-33-18-10-14(5-6-17(18)35-26-23(32)22(31)21(30)20(12-29)36-26)24-16(11-28)15-8-13(4-3-7-27)9-19(34-2)25(15)37-24/h3-6,8-10,16,20-24,26-32H,7,11-12H2,1-2H3/b4-3+/t16-,20+,21+,22-,23+,24+,26+/m0/s1

> <INCHI_KEY>
SPWHQAUMLDQOFU-QXGRHDLQSA-N

> <FORMULA>
C26H32O11

> <MOLECULAR_WEIGHT>
520.531

> <EXACT_MASS>
520.19446185

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
53.83649085435276

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{4-[(2S,3R)-3-(hydroxymethyl)-5-[(1E)-3-hydroxyprop-1-en-1-yl]-7-methoxy-2,3-dihydro-1-benzofuran-2-yl]-2-methoxyphenoxy}oxane-3,4,5-triol

> <ALOGPS_LOGP>
0.82

> <JCHEM_LOGP>
-0.4348558596666666

> <ALOGPS_LOGS>
-3.12

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.19067568612925

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.199408379784247

> <JCHEM_PKA_STRONGEST_BASIC>
-2.526366856501978

> <JCHEM_POLAR_SURFACE_AREA>
167.53

> <JCHEM_REFRACTIVITY>
130.6013

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.94e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{4-[(2S,3R)-3-(hydroxymethyl)-5-[(1E)-3-hydroxyprop-1-en-1-yl]-7-methoxy-2,3-dihydro-1-benzofuran-2-yl]-2-methoxyphenoxy}oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.924   5.923   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       6.258   6.693   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.126   4.089   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.126   1.597   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.650   0.132   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.680  -1.012   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -0.320   2.843   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.090   1.509   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.630   1.509   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -3.400   2.843   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.630   4.177   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.090   4.177   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -3.400   5.510   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -2.630   6.844   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -4.940   2.843   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -5.710   4.177   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -4.940   5.510   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -5.710   6.844   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -7.250   6.844   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -8.020   5.510   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -7.250   4.177   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -8.020   2.843   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      -9.560   5.510   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      -8.020   8.178   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -4.940   8.178   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -5.710   9.511   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       7.591   1.303   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       7.591  -0.237   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       8.925  -1.007   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      10.259  -0.237   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   34                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   11                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    5   10                                                       
CONECT   10    9   11   14                                                  
CONECT   11   10    4   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14   10   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18   14                                                       
CONECT   20   18   21                                                       
CONECT   21   20                                                            
CONECT   22   17   23                                                       
CONECT   23   22   24   28                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   32                                                  
CONECT   26   25   27   31                                                  
CONECT   27   26   28   30                                                  
CONECT   28   27   23   29                                                  
CONECT   29   28                                                            
CONECT   30   27                                                            
CONECT   31   26                                                            
CONECT   32   25   33                                                       
CONECT   33   32                                                            
CONECT   34    2   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   80    0
END

View in JSmol

Synonyms

Value	Source
Dehydrodiconiferyl alcohol 4-O-b-D-glucopyranoside	Generator
Dehydrodiconiferyl alcohol 4-O-β-D-glucopyranoside	Generator

Chemical Formula

C₂₆H₃₂O₁₁

Average Mass

520.5310 Da

Monoisotopic Mass

520.19446 Da

IUPAC Name

(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{4-[(2S,3R)-3-(hydroxymethyl)-5-[(1E)-3-hydroxyprop-1-en-1-yl]-7-methoxy-2,3-dihydro-1-benzofuran-2-yl]-2-methoxyphenoxy}oxane-3,4,5-triol

Traditional Name

(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{4-[(2S,3R)-3-(hydroxymethyl)-5-[(1E)-3-hydroxyprop-1-en-1-yl]-7-methoxy-2,3-dihydro-1-benzofuran-2-yl]-2-methoxyphenoxy}oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

COC1=C2O[C@@H]([C@@H](CO)C2=CC(\C=C\CO)=C1)C1=CC=C(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C(OC)=C1

InChI Identifier

InChI=1S/C26H32O11/c1-33-18-10-14(5-6-17(18)35-26-23(32)22(31)21(30)20(12-29)36-26)24-16(11-28)15-8-13(4-3-7-27)9-19(34-2)25(15)37-24/h3-6,8-10,16,20-24,26-32H,7,11-12H2,1-2H3/b4-3+/t16-,20+,21+,22-,23+,24+,26+/m0/s1

InChI Key

SPWHQAUMLDQOFU-QXGRHDLQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arum italicum	LOTUS Database	35616633
Boscia senegalensis	LOTUS Database	35616633
Cistanche tubulosa	LOTUS Database	35616633
Equisetum ramosissimum	LOTUS Database	35616633
Osmanthus fragrans	LOTUS Database	35616633
Volkameria inermis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

2-arylbenzofuran flavonoids

Sub Class

Not Available

Direct Parent

2-arylbenzofuran flavonoids

Alternative Parents

Substituents

2-arylbenzofuran flavonoid
Lignan glycoside
Neolignan skeleton
Fatty acyl glycoside of mono- or disaccharide
Phenolic glycoside
Fatty acyl glycoside
Alkyl glycoside
O-glycosyl compound
Glycosyl compound
Cinnamyl alcohol
Coumaran
Benzofuran
Methoxybenzene
Anisole
Styrene
Phenoxy compound
Phenol ether
Alkyl aryl ether
Monocyclic benzene moiety
Fatty acyl
Benzenoid
Oxane
Monosaccharide
Secondary alcohol
Ether
Organoheterocyclic compound
Acetal
Polyol
Oxacycle
Organic oxygen compound
Alcohol
Primary alcohol
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.82	ALOGPS
logP	-0.43	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	-2.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	167.53 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	130.6 m³·mol⁻¹	ChemAxon
Polarizability	53.84 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4475499

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5316442

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Nan ZD, Zhao MB, Jiang Y, Tu PF: [Lignans from stems of Cistanche deserticola cultured in Tarim desert]. Zhongguo Zhong Yao Za Zhi. 2015 Feb;40(3):463-8. [PubMed:26084171 ]

Showing NP-Card for (7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside (NP0074846)

MOL for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

3D MOL for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

3D SDF for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

3D-SDF for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

PDB for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

3D PDB for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

SMILES for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

INCHI for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

Structure for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)

3D Structure for NP0074846 ((7S,8R)-Dehydrodiconiferyl alcohol 4-O-beta-glucopyranoside)