NP-MRD: Showing NP-Card for Ptaeroxylin (NP0074764)

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Record Information

Version

2.0

Created at

2022-04-28 20:05:37 UTC

Updated at

2022-04-28 20:05:37 UTC

NP-MRD ID

NP0074764

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Ptaeroxylin

Description

PTAEROXYLIN belongs to the class of organic compounds known as benzoxepines. These are organic compounds containing a benzene ring fused to an oxepine ring (an unsaturated seven-membered heterocycle with one oxygen atom replacing a carbon atom). Ptaeroxylin is found in Cedrelopsis grevei and Pterodon obliquum. PTAEROXYLIN is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 33 35  0  0  0  0  0  0  0  0999 V2000
    4.6282   -1.6505   -0.4397 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4998   -0.8146    0.0449 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1884    0.1803   -0.7687 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1216    1.1921   -0.5831 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8574    0.5966   -0.0968 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6098   -0.4135    0.7937 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6771   -0.8073    1.0986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7578   -0.1810    0.5027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9946   -0.5406    0.7788 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0700   -0.0191    0.2764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4377   -0.4935    0.6501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9056    1.0055   -0.6299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6416    1.4455   -0.9768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5036    2.3610   -1.7869 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5441    0.8449   -0.4031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2358    1.2342   -0.7032 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0342    2.2222   -1.5732 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5791   -1.1492    1.4833 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9432   -1.2356    1.3186 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4822   -2.7094   -0.0957 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7476   -1.6075   -1.5370 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5381   -1.2893    0.0836 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7526    0.3054   -1.6853 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9714    1.7946   -1.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4546    1.9318    0.2008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8781   -1.5991    1.7963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1050    0.3240    0.9354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8403   -0.9980   -0.2560 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3082   -1.2559    1.4550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8091    1.4381   -1.0472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4048    2.8488   -2.1466 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4728   -0.6546    2.1247 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2325   -2.3064    1.5359 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 10  1  0
 10 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15  8  2  0
  8  9  1  0
  8  7  1  0
  7  6  2  0
  6 18  1  0
 18 19  1  0
 19  2  1  0
  2  1  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5 16  2  0
 16 17  1  0
  9 10  1  0
  5  6  1  0
 16 15  1  0
 11 27  1  0
 11 28  1  0
 11 29  1  0
 12 30  1  0
  7 26  1  0
 19 32  1  0
 19 33  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
 17 31  1  0
M  END


  Mrv1533004201503532D          

 19 21  0  0  0  0            999 V2000
   -0.9192    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0942    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2638    1.1558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0681    1.3394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7131    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4276    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4276    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1421    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8565    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8565    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5710    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5710   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2855   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8565   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1421    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4276   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7131    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0681   -0.5144    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2638   -0.3308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
  8 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
  5 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
  2 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0074764

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC(=O)C2=C(O1)C=C1OCC(C)=CCC1=C2O

> <INCHI_IDENTIFIER>
InChI=1S/C15H14O4/c1-8-3-4-10-12(18-7-8)6-13-14(15(10)17)11(16)5-9(2)19-13/h3,5-6,17H,4,7H2,1-2H3

> <INCHI_KEY>
IUIHYYSAVUBPQO-UHFFFAOYSA-N

> <FORMULA>
C15H14O4

> <MOLECULAR_WEIGHT>
258.273

> <EXACT_MASS>
258.089208931

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
27.303360032459995

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-hydroxy-2,8-dimethyl-4H,6H,9H-oxepino[3,2-g]chromen-4-one

> <ALOGPS_LOGP>
2.22

> <JCHEM_LOGP>
3.026689593333333

> <ALOGPS_LOGS>
-3.09

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.075118015073866

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.18876033999829

> <JCHEM_PKA_STRONGEST_BASIC>
-4.771946853538635

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
73.30749999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.08e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-hydroxy-2,8-dimethyl-6H,9H-oxepino[3,2-g]chromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-15         0                                  
HETATM    1  C   UNK     0      -1.716   0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.176   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.492   2.157   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.994   2.500   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.198   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.532   2.310   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.532   3.850   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.865   1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.199   2.310   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       7.199   3.850   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       8.533   1.540   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.533  -0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.866  -0.770   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       7.199  -0.770   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       5.865   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.532  -0.770   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.198   0.000   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.994  -0.960   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.492  -0.617   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   19                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   17                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   15                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14    8   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16    5   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18    2                                                       
MASTER        0    0    0    0    0    0    0    0   19    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₄O₄

Average Mass

258.2730 Da

Monoisotopic Mass

258.08921 Da

IUPAC Name

5-hydroxy-2,8-dimethyl-4H,6H,9H-oxepino[3,2-g]chromen-4-one

Traditional Name

5-hydroxy-2,8-dimethyl-6H,9H-oxepino[3,2-g]chromen-4-one

CAS Registry Number

Not Available

SMILES

CC1=CC(=O)C2=C(O1)C=C1OCC(C)=CCC1=C2O

InChI Identifier

InChI=1S/C15H14O4/c1-8-3-4-10-12(18-7-8)6-13-14(15(10)17)11(16)5-9(2)19-13/h3,5-6,17H,4,7H2,1-2H3

InChI Key

IUIHYYSAVUBPQO-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cedrelopsis grevei	Plant	KNApSAcK
Pterodon obliquum	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzoxepines. These are organic compounds containing a benzene ring fused to an oxepine ring (an unsaturated seven-membered heterocycle with one oxygen atom replacing a carbon atom).

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzoxepines

Sub Class

Not Available

Direct Parent

Benzoxepines

Alternative Parents

Substituents

Benzoxepine
Chromone
Benzopyran
1-benzopyran
Pyranone
1-hydroxy-4-unsubstituted benzenoid
Alkyl aryl ether
Benzenoid
Pyran
Heteroaromatic compound
Vinylogous acid
Oxacycle
Ether
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.22	ALOGPS
logP	3.03	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	7.19	ChemAxon
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	73.31 m³·mol⁻¹	ChemAxon
Polarizability	27.3 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3646533

PDB ID

Not Available

ChEBI ID

108592

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Ptaeroxylin (NP0074764)

MOL for NP0074764 (Ptaeroxylin)

3D MOL for NP0074764 (Ptaeroxylin)

3D SDF for NP0074764 (Ptaeroxylin)

3D-SDF for NP0074764 (Ptaeroxylin)

PDB for NP0074764 (Ptaeroxylin)

3D PDB for NP0074764 (Ptaeroxylin)

SMILES for NP0074764 (Ptaeroxylin)

INCHI for NP0074764 (Ptaeroxylin)

Structure for NP0074764 (Ptaeroxylin)

3D Structure for NP0074764 (Ptaeroxylin)