NP-MRD: Showing NP-Card for 2-Deacetoxytaxinine J (NP0074644)

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Record Information

Version

2.0

Created at

2022-04-28 19:56:11 UTC

Updated at

2022-04-28 19:56:11 UTC

NP-MRD ID

NP0074644

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-Deacetoxytaxinine J

Description

2-Deacetoxy-7,9-dideacetyltaxinine belongs to the class of organic compounds known as taxanes and derivatives. These are diterpenoids with a structure based either on the taxane skeleton, or a derivative thereof. In term of phytochemistry, several derivatives of the taxane skeleton exist: 2(3->20)-Abeotaxane, 3,11-cyclotaxane, 11(15->1),11(10->9)-abeotaxane, 3,8-seco-taxane, and 11(15->1)-abeotaxane, among others. More complex skeletons have been found recently, which include the taxane-derived [3.3.3] Propellane ring system. 2-Deacetoxytaxinine J is found in Taxus chinensis, Taxus mairei , Taxus wallichiana and Taxus yunnanensis. 2-Deacetoxytaxinine J was first documented in 1998 (PMID: 17253235). Based on a literature review very few articles have been published on 2-Deacetoxy-7,9-dideacetyltaxinine.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282221562D          

 41 44  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652304282221562D          

 41 44  0  0  1  0            999 V2000
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    9.6381   -1.6127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2648   -2.1493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1135   -2.9603    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3355   -3.2347    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7088   -2.6982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0998    1.3320    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4173    1.0338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3286   -0.1633    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1431   -0.2949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0030    0.3120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1792   -0.6596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3835   -0.0562    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1873   -0.2418    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1423    0.7327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6938    0.9258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6319    1.8415    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8415    2.0779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2416    1.5117    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6511    2.8807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  1 10  1  0  0  0  0
 10 11  1  6  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  8 15  1  1  0  0  0
 15 16  2  0  0  0  0
 14 17  1  6  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 22 27  1  0  0  0  0
 12 28  1  1  0  0  0
  9 29  1  1  0  0  0
  6 30  1  0  0  0  0
  2 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
  4 33  1  6  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
  3 37  1  0  0  0  0
  1 38  1  1  0  0  0
 38 39  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0074644

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1C[C@H]2C[C@@H]3C(=C)[C@H](C[C@H](O)[C@@]3(C)[C@@H](O)[C@H](OC(C)=O)C(=C1C)C2(C)C)OC(=O)\C=C\C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C33H42O8/c1-18-24-15-23-16-25(39-20(3)34)19(2)29(32(23,5)6)30(40-21(4)35)31(38)33(24,7)27(36)17-26(18)41-28(37)14-13-22-11-9-8-10-12-22/h8-14,23-27,30-31,36,38H,1,15-17H2,2-7H3/b14-13+/t23-,24-,25+,26+,27+,30-,31+,33+/m1/s1

> <INCHI_KEY>
SZGBZZQICXWUTP-WOAMWUDZSA-N

> <FORMULA>
C33H42O8

> <MOLECULAR_WEIGHT>
566.691

> <EXACT_MASS>
566.287968312

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
83

> <JCHEM_AVERAGE_POLARIZABILITY>
61.93866391952541

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,3R,5S,7S,8S,9R,10R,13S)-10,13-bis(acetyloxy)-7,9-dihydroxy-8,12,15,15-tetramethyl-4-methylidenetricyclo[9.3.1.0^{3,8}]pentadec-11-en-5-yl (2E)-3-phenylprop-2-enoate

> <ALOGPS_LOGP>
3.98

> <JCHEM_LOGP>
3.776255424666667

> <ALOGPS_LOGS>
-5.07

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.65285376486727

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.520361770526268

> <JCHEM_PKA_STRONGEST_BASIC>
-3.012161859843143

> <JCHEM_POLAR_SURFACE_AREA>
119.36000000000001

> <JCHEM_REFRACTIVITY>
153.25450000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.81e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3R,5S,7S,8S,9R,10R,13S)-10,13-bis(acetyloxy)-7,9-dihydroxy-8,12,15,15-tetramethyl-4-methylidenetricyclo[9.3.1.0^{3,8}]pentadec-11-en-5-yl (2E)-3-phenylprop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       5.268   1.939   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.908   1.041   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.351   0.607   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.835  -0.885   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.952  -1.999   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.543  -1.707   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.159  -1.918   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.503  -1.054   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.785   0.460   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.855   1.752   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.636   3.079   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       9.237   0.973   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.407  -0.029   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.125  -1.543   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.672  -2.055   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.390  -3.569   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      11.295  -2.544   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      12.747  -2.032   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      13.029  -0.518   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      13.917  -3.034   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.369  -2.521   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      16.539  -3.523   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      17.991  -3.010   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      19.161  -4.012   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      18.878  -5.526   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      17.426  -6.038   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      16.256  -5.037   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       9.520   2.486   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       8.246   1.930   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.347  -0.305   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       5.867  -0.550   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       5.606   0.582   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.334  -1.231   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -0.716  -0.105   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -2.216  -0.451   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      -0.266   1.368   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       1.295   1.728   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       4.913   3.437   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0       3.438   3.879   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0       2.318   2.822   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0       3.082   5.377   0.000  0.00  0.00           C+0
CONECT    1    2   10   38                                                  
CONECT    2    1    3   30                                                  
CONECT    3    2    4   37                                                  
CONECT    4    3    5   33                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   30                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   15                                                  
CONECT    9    8   10   12   29                                             
CONECT   10    9    1   11                                                  
CONECT   11   10                                                            
CONECT   12    9   13   28                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14    8   16                                                  
CONECT   16   15                                                            
CONECT   17   14   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   27                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   22                                                       
CONECT   28   12                                                            
CONECT   29    9                                                            
CONECT   30    6    2   31   32                                             
CONECT   31   30                                                            
CONECT   32   30                                                            
CONECT   33    4   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34                                                            
CONECT   37    3                                                            
CONECT   38    1   39                                                       
CONECT   39   38   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   88    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₄₂O₈

Average Mass

566.6910 Da

Monoisotopic Mass

566.28797 Da

IUPAC Name

(1R,3R,5S,7S,8S,9R,10R,13S)-10,13-bis(acetyloxy)-7,9-dihydroxy-8,12,15,15-tetramethyl-4-methylidenetricyclo[9.3.1.0^{3,8}]pentadec-11-en-5-yl (2E)-3-phenylprop-2-enoate

Traditional Name

(1R,3R,5S,7S,8S,9R,10R,13S)-10,13-bis(acetyloxy)-7,9-dihydroxy-8,12,15,15-tetramethyl-4-methylidenetricyclo[9.3.1.0^{3,8}]pentadec-11-en-5-yl (2E)-3-phenylprop-2-enoate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1C[C@H]2C[C@@H]3C(=C)[C@H](C[C@H](O)[C@@]3(C)[C@@H](O)[C@H](OC(C)=O)C(=C1C)C2(C)C)OC(=O)\C=C\C1=CC=CC=C1

InChI Identifier

InChI=1S/C33H42O8/c1-18-24-15-23-16-25(39-20(3)34)19(2)29(32(23,5)6)30(40-21(4)35)31(38)33(24,7)27(36)17-26(18)41-28(37)14-13-22-11-9-8-10-12-22/h8-14,23-27,30-31,36,38H,1,15-17H2,2-7H3/b14-13+/t23-,24-,25+,26+,27+,30-,31+,33+/m1/s1

InChI Key

SZGBZZQICXWUTP-WOAMWUDZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Taxus chinensis	Plant	KNApSAcK
Taxus mairei	Plant	KNApSAcK
Taxus wallichiana	LOTUS Database	35616633
Taxus wallichiana var. yunnanensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as taxanes and derivatives. These are diterpenoids with a structure based either on the taxane skeleton, or a derivative thereof. In term of phytochemistry, several derivatives of the taxane skeleton exist: 2(3->20)-Abeotaxane, 3,11-cyclotaxane, 11(15->1),11(10->9)-abeotaxane, 3,8-seco-taxane, and 11(15->1)-abeotaxane, among others. More complex skeletons have been found recently, which include the taxane-derived [3.3.3] Propellane ring system.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Taxanes and derivatives

Alternative Parents

Substituents

Taxane diterpenoid
Cinnamic acid ester
Cinnamic acid or derivatives
Tricarboxylic acid or derivatives
Styrene
Fatty acid ester
Fatty acyl
Benzenoid
Monocyclic benzene moiety
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Cyclic alcohol
Secondary alcohol
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.98	ALOGPS
logP	3.78	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	13.52	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	119.36 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	153.25 m³·mol⁻¹	ChemAxon
Polarizability	61.94 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101937125

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Liang JY, Huang KS, Gunatilaka AA: A new 1,2-deoxytaxane diterpenoid from Taxus chinensis. Planta Med. 1998 Mar;64(2):187-8. doi: 10.1055/s-2006-957403. [PubMed:17253235 ]

Showing NP-Card for 2-Deacetoxytaxinine J (NP0074644)

MOL for NP0074644 (2-Deacetoxytaxinine J)

3D MOL for NP0074644 (2-Deacetoxytaxinine J)

3D SDF for NP0074644 (2-Deacetoxytaxinine J)

3D-SDF for NP0074644 (2-Deacetoxytaxinine J)

PDB for NP0074644 (2-Deacetoxytaxinine J)

3D PDB for NP0074644 (2-Deacetoxytaxinine J)

SMILES for NP0074644 (2-Deacetoxytaxinine J)

INCHI for NP0074644 (2-Deacetoxytaxinine J)

Structure for NP0074644 (2-Deacetoxytaxinine J)

3D Structure for NP0074644 (2-Deacetoxytaxinine J)