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Record Information
Version2.0
Created at2022-04-28 19:08:02 UTC
Updated at2022-04-28 19:08:03 UTC
NP-MRD IDNP0073922
Secondary Accession NumbersNone
Natural Product Identification
Common NamePhyllocactin II
Description(2S)-4-[(E)-2-[(2S)-2-carboxy-5-{[(2S,3R,4R,5S,6R)-5-[(2-carboxyacetyl)oxy]-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-hydroxy-2,3-dihydro-1H-indol-1-yl]ethenyl]-2,3-dihydropyridine-2,6-dicarboxylic acid belongs to the class of organic compounds known as pentacarboxylic acids and derivatives. These are carboxylic acids containing exactly five carboxyl groups. Phyllocactin II is found in Hylocereus ocamponis, Hylocereus purpusii and Hylocereus undatus . Based on a literature review very few articles have been published on (2S)-4-[(E)-2-[(2S)-2-carboxy-5-{[(2S,3R,4R,5S,6R)-5-[(2-carboxyacetyl)oxy]-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-hydroxy-2,3-dihydro-1H-indol-1-yl]ethenyl]-2,3-dihydropyridine-2,6-dicarboxylic acid.
Structure
Thumb
Synonyms
ValueSource
(2S)-4-[(e)-2-[(2S)-2-Carboxy-5-{[(2S,3R,4R,5S,6R)-5-[(2-carboxyacetyl)oxy]-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-hydroxy-2,3-dihydro-1H-indol-1-yl]ethenyl]-2,3-dihydropyridine-2,6-dicarboxylateGenerator
Chemical FormulaC27H28N2O16
Average Mass636.5190 Da
Monoisotopic Mass636.14388 Da
IUPAC Name(2S)-4-[(E)-2-[(2S)-2-carboxy-5-{[(2S,3R,4R,5S,6R)-5-[(2-carboxyacetyl)oxy]-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-hydroxy-2,3-dihydro-1H-indol-1-yl]ethenyl]-2,3-dihydropyridine-2,6-dicarboxylic acid
Traditional Name(2S)-4-[(E)-2-[(2S)-2-carboxy-5-{[(2S,3R,4R,5S,6R)-5-[(2-carboxyacetyl)oxy]-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-hydroxy-2,3-dihydroindol-1-yl]ethenyl]-2,3-dihydropyridine-2,6-dicarboxylic acid
CAS Registry NumberNot Available
SMILES
OC[C@H]1O[C@@H](OC2=C(O)C=C3N(\C=C\C4=CC(=N[C@@H](C4)C(O)=O)C(O)=O)[C@@H](CC3=C2)C(O)=O)[C@H](O)[C@@H](O)[C@@H]1OC(=O)CC(O)=O
InChI Identifier
InChI=1S/C27H28N2O16/c30-9-18-23(45-20(34)8-19(32)33)21(35)22(36)27(44-18)43-17-6-11-5-15(26(41)42)29(14(11)7-16(17)31)2-1-10-3-12(24(37)38)28-13(4-10)25(39)40/h1-3,6-7,13,15,18,21-23,27,30-31,35-36H,4-5,8-9H2,(H,32,33)(H,37,38)(H,39,40)(H,41,42)/b2-1+/t13-,15-,18+,21+,22+,23+,27+/m0/s1
InChI KeyIKFMLZRWSCLOMP-JUFXGHKBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Hylocereus ocamponisPlant
Hylocereus purpusiiPlant
Hylocereus undatusPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pentacarboxylic acids and derivatives. These are carboxylic acids containing exactly five carboxyl groups.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassPentacarboxylic acids and derivatives
Direct ParentPentacarboxylic acids and derivatives
Alternative Parents
Substituents
  • Pentacarboxylic acid or derivatives
  • Phenolic glycoside
  • Indolecarboxylic acid derivative
  • Indolecarboxylic acid
  • Hexose monosaccharide
  • O-glycosyl compound
  • Glycosyl compound
  • L-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Alpha-amino acid
  • Indole or derivatives
  • Dihydropyridinecarboxylic acid derivative
  • Tertiary aliphatic/aromatic amine
  • 1-hydroxy-2-unsubstituted benzenoid
  • Aralkylamine
  • Dihydropyridine
  • Benzenoid
  • 1,3-dicarbonyl compound
  • Oxane
  • Monosaccharide
  • Hydropyridine
  • Amino acid
  • Tertiary amine
  • Secondary alcohol
  • Ketimine
  • Carboxylic acid ester
  • Amino acid or derivatives
  • Allylamine
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Enamine
  • Carboxylic acid
  • Acetal
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Organonitrogen compound
  • Imine
  • Carbonyl group
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.18ALOGPS
logP-1.2ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)2.22ChemAxon
pKa (Strongest Basic)2.86ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area290.48 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity143.23 m³·mol⁻¹ChemAxon
Polarizability60.21 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound162821393
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available