NP-MRD: Showing NP-Card for (-)-Persicasulfide A (NP0073919)

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Record Information

Version

2.0

Created at

2022-04-28 19:07:54 UTC

Updated at

2022-04-28 19:07:54 UTC

NP-MRD ID

NP0073919

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Persicasulfide A

Description

1-(2E)-3-[(2R)-butan-2-yldisulfanyl]prop-2-en-1-yl 3-tert-butyl propanedioate belongs to the class of organic compounds known as dicarboxylic acids and derivatives. These are organic compounds containing exactly two carboxylic acid groups. (-)-Persicasulfide A is found in Ferula persica and Ferula szowitsiana. Based on a literature review very few articles have been published on 1-(2E)-3-[(2R)-butan-2-yldisulfanyl]prop-2-en-1-yl 3-tert-butyl propanedioate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 44 43  0  0  0  0  0  0  0  0999 V2000
   -6.4083    0.8512   -0.2317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8468   -0.1287    0.7626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7249   -1.5362    0.1723 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.0677   -2.0523   -0.2644 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4674   -1.6080   -1.1028 S   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4793    0.2438   -1.3967 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0496    0.3962   -0.3304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9523    1.3918    0.5344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8037    1.5832    1.4490 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2073    0.6519    1.3612 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0470    0.4473    0.2881 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9070    1.1816   -0.7264 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1066   -0.6234    0.3183 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3918   -0.0022   -0.0316 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4837    1.2224   -0.2952 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5573   -0.7714   -0.0760 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8143   -0.1973   -0.3953 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8778   -1.2769   -0.3683 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1673    0.8605    0.6436 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8438    0.4118   -1.7727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3959    1.2618    0.1251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7316    1.7388   -0.2531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4779    0.3714   -1.2230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8913    0.2172    1.1740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5528   -0.1501    1.6401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3858   -2.1729    1.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9512   -3.1190   -0.5448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4383   -1.4413   -1.1056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7331   -1.9659    0.6373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2803   -0.3546   -0.4137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8051    2.0917    0.5314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1410    1.6299    2.5276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4528    2.6427    1.2654 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7704   -1.3603   -0.4472 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1304   -1.1287    1.2889 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5459   -2.0892   -1.0498 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8178   -0.8601   -0.7918 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9826   -1.6408    0.6719 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6974    0.5208    1.6134 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2477    0.9276    0.7592 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7020    1.8357    0.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2910    1.3581   -1.7920 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5330   -0.3293   -2.5354 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9150    0.6288   -2.0021 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 17 16  1  1
 17 18  1  0
 17 19  1  0
 17 20  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  0
  2 25  1  0
  3 26  1  1
  4 27  1  0
  4 28  1  0
  4 29  1  0
  7 30  1  0
  8 31  1  0
  9 32  1  0
  9 33  1  0
 13 34  1  0
 13 35  1  0
 18 36  1  0
 18 37  1  0
 18 38  1  0
 19 39  1  0
 19 40  1  0
 19 41  1  0
 20 42  1  0
 20 43  1  0
 20 44  1  0
M  END


  Mrv1652304282221072D          

 20 19  0  0  1  0            999 V2000
    4.5375    2.1434    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.8230    2.5559    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.1086    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3941    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6796    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9651    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2507    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2507    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4638    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1783    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1783    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8927    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6072    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3217    1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1947    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0197    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520    2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2520    3.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9664    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6809    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
  1 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0073919

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H](C)SS\C=C\COC(=O)CC(=O)OC(C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C14H24O4S2/c1-6-11(2)20-19-9-7-8-17-12(15)10-13(16)18-14(3,4)5/h7,9,11H,6,8,10H2,1-5H3/b9-7+/t11-/m1/s1

> <INCHI_KEY>
HPCAZZNSODRLCQ-MXMFLMJRSA-N

> <FORMULA>
C14H24O4S2

> <MOLECULAR_WEIGHT>
320.46

> <EXACT_MASS>
320.111601601

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
34.5799181291628

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1-(2E)-3-[(2R)-butan-2-yldisulfanyl]prop-2-en-1-yl 3-tert-butyl propanedioate

> <ALOGPS_LOGP>
5.19

> <JCHEM_LOGP>
3.5840807029999997

> <ALOGPS_LOGS>
-4.94

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.293260483965467

> <JCHEM_PKA_STRONGEST_BASIC>
-6.860001434231768

> <JCHEM_POLAR_SURFACE_AREA>
52.60000000000001

> <JCHEM_REFRACTIVITY>
86.0037

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.70e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-(2E)-3-[(2R)-butan-2-yldisulfanyl]prop-2-en-1-yl 3-tert-butyl propanedioate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  S   UNK     0       8.470   4.001   0.000  0.00  0.00           S+0
HETATM    2  S   UNK     0       7.136   4.771   0.000  0.00  0.00           S+0
HETATM    3  C   UNK     0       5.803   4.001   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.469   4.771   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.135   4.001   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       1.802   4.771   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.468   4.001   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.468   2.461   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -0.866   4.771   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.199   4.001   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -2.199   2.461   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -3.533   4.771   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -4.867   4.001   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -6.200   3.231   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.097   2.667   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.637   5.335   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.804   4.771   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.804   6.311   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.137   4.001   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      12.471   4.771   0.000  0.00  0.00           C+0
CONECT    1    2   17                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
CONECT   17    1   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   38    0
END

View in JSmol

Synonyms

Value	Source
1-(2E)-3-[(2R)-Butan-2-yldisulfanyl]prop-2-en-1-yl 3-tert-butyl propanedioic acid	Generator
1-(2E)-3-[(2R)-Butan-2-yldisulphanyl]prop-2-en-1-yl 3-tert-butyl propanedioate	Generator
1-(2E)-3-[(2R)-Butan-2-yldisulphanyl]prop-2-en-1-yl 3-tert-butyl propanedioic acid	Generator

Chemical Formula

C₁₄H₂₄O₄S₂

Average Mass

320.4600 Da

Monoisotopic Mass

320.11160 Da

IUPAC Name

1-(2E)-3-[(2R)-butan-2-yldisulfanyl]prop-2-en-1-yl 3-tert-butyl propanedioate

Traditional Name

1-(2E)-3-[(2R)-butan-2-yldisulfanyl]prop-2-en-1-yl 3-tert-butyl propanedioate

CAS Registry Number

Not Available

SMILES

CC[C@@H](C)SS\C=C\COC(=O)CC(=O)OC(C)(C)C

InChI Identifier

InChI=1S/C14H24O4S2/c1-6-11(2)20-19-9-7-8-17-12(15)10-13(16)18-14(3,4)5/h7,9,11H,6,8,10H2,1-5H3/b9-7+/t11-/m1/s1

InChI Key

HPCAZZNSODRLCQ-MXMFLMJRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ferula persica	LOTUS Database	35616633
Ferula szowitziana	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dicarboxylic acids and derivatives. These are organic compounds containing exactly two carboxylic acid groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Dicarboxylic acids and derivatives

Direct Parent

Dicarboxylic acids and derivatives

Alternative Parents

Substituents

1,3-dicarbonyl compound
Dicarboxylic acid or derivatives
Organic disulfide
Carboxylic acid ester
Sulfenyl compound
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organosulfur compound
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.19	ALOGPS
logP	3.58	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	12.29	ChemAxon
pKa (Strongest Basic)	-6.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	52.6 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	86 m³·mol⁻¹	ChemAxon
Polarizability	34.58 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163047079

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Persicasulfide A (NP0073919)

MOL for NP0073919 ((-)-Persicasulfide A)

3D MOL for NP0073919 ((-)-Persicasulfide A)

3D SDF for NP0073919 ((-)-Persicasulfide A)

3D-SDF for NP0073919 ((-)-Persicasulfide A)

PDB for NP0073919 ((-)-Persicasulfide A)

3D PDB for NP0073919 ((-)-Persicasulfide A)

SMILES for NP0073919 ((-)-Persicasulfide A)

INCHI for NP0073919 ((-)-Persicasulfide A)

Structure for NP0073919 ((-)-Persicasulfide A)

3D Structure for NP0073919 ((-)-Persicasulfide A)