| Record Information |
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| Version | 2.0 |
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| Created at | 2022-04-28 18:41:55 UTC |
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| Updated at | 2022-04-28 18:41:55 UTC |
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| NP-MRD ID | NP0073445 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | (-)-Dicerandrol A |
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| Description | Dicerandrol A belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring. Dicerandrol A is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. (-)-Dicerandrol A was first documented in 2008 (PMID: 17950385). Based on a literature review a small amount of articles have been published on dicerandrol A (PMID: 24335522) (PMID: 23412059) (PMID: 20372017). |
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| Structure | C[C@@H]1CC(O)=C2C(=O)C3=C(O)C(=CC=C3O[C@]2(CO)[C@@H]1OC(C)=O)C1=C(O)C2=C(O[C@]3(CO)[C@H](OC(C)=O)[C@H](C)CC(O)=C3C2=O)C=C1 InChI=1S/C34H34O14/c1-13-9-19(39)25-29(43)23-21(47-33(25,11-35)31(13)45-15(3)37)7-5-17(27(23)41)18-6-8-22-24(28(18)42)30(44)26-20(40)10-14(2)32(46-16(4)38)34(26,12-36)48-22/h5-8,13-14,31-32,35-36,39-42H,9-12H2,1-4H3/t13-,14-,31-,32-,33+,34+/m1/s1 |
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| Synonyms | Not Available |
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| Chemical Formula | C34H34O14 |
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| Average Mass | 666.6320 Da |
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| Monoisotopic Mass | 666.19486 Da |
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| IUPAC Name | (5R,5'R,6R,6'R,10aR,10'aR)-5'-(acetyloxy)-1,1',8,8'-tetrahydroxy-10a,10'a-bis(hydroxymethyl)-6,6'-dimethyl-9,9'-dioxo-5H,5'H,6H,6'H,7H,7'H,9H,9'H,10aH,10'aH-[2,2'-bixanthene]-5-yl acetate |
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| Traditional Name | (5R,5'R,6R,6'R,10aR,10'aR)-5'-(acetyloxy)-1,1',8,8'-tetrahydroxy-10a,10'a-bis(hydroxymethyl)-6,6'-dimethyl-9,9'-dioxo-5H,5'H,6H,6'H,7H,7'H-[2,2'-bixanthene]-5-yl acetate |
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| CAS Registry Number | Not Available |
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| SMILES | C[C@@H]1CC(O)=C2C(=O)C3=C(O)C(=CC=C3O[C@]2(CO)[C@@H]1OC(C)=O)C1=C(O)C2=C(O[C@]3(CO)[C@H](OC(C)=O)[C@H](C)CC(O)=C3C2=O)C=C1 |
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| InChI Identifier | InChI=1S/C34H34O14/c1-13-9-19(39)25-29(43)23-21(47-33(25,11-35)31(13)45-15(3)37)7-5-17(27(23)41)18-6-8-22-24(28(18)42)30(44)26-20(40)10-14(2)32(46-16(4)38)34(26,12-36)48-22/h5-8,13-14,31-32,35-36,39-42H,9-12H2,1-4H3/t13-,14-,31-,32-,33+,34+/m1/s1 |
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| InChI Key | LMADRJRTQXNOEP-FNCICBJWSA-N |
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| Experimental Spectra |
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| Not Available | | Predicted Spectra |
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| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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| 1D NMR | 13C NMR Spectrum (1D, 25 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | Not Available |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring. |
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| Kingdom | Organic compounds |
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| Super Class | Organoheterocyclic compounds |
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| Class | Benzopyrans |
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| Sub Class | 1-benzopyrans |
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| Direct Parent | Xanthones |
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| Alternative Parents | |
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| Substituents | - Xanthone
- Chromone
- Aryl ketone
- 1-hydroxy-4-unsubstituted benzenoid
- Alkyl aryl ether
- Dicarboxylic acid or derivatives
- Benzenoid
- Vinylogous acid
- Carboxylic acid ester
- Ketone
- Ether
- Enol
- Carboxylic acid derivative
- Oxacycle
- Organooxygen compound
- Organic oxygen compound
- Hydrocarbon derivative
- Organic oxide
- Alcohol
- Carbonyl group
- Primary alcohol
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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| General References | - Rukachaisirikul V, Sommart U, Phongpaichit S, Sakayaroj J, Kirtikara K: Metabolites from the endophytic fungus Phomopsis sp. PSU-D15. Phytochemistry. 2008 Feb;69(3):783-7. doi: 10.1016/j.phytochem.2007.09.006. Epub 2007 Oct 22. [PubMed:17950385 ]
- Ding B, Yuan J, Huang X, Wen W, Zhu X, Liu Y, Li H, Lu Y, He L, Tan H, She Z: New dimeric members of the phomoxanthone family: phomolactonexanthones A, B and deacetylphomoxanthone C isolated from the fungus Phomopsis sp. Mar Drugs. 2013 Dec 11;11(12):4961-72. doi: 10.3390/md11124961. [PubMed:24335522 ]
- Choi JN, Kim J, Ponnusamy K, Lim C, Kim JG, Muthaiya MJ, Lee C: Metabolic changes of Phomopsis longicolla fermentation and its effect on antimicrobial activity against Xanthomonas oryzae. J Microbiol Biotechnol. 2013 Feb;23(2):177-83. doi: 10.4014/jmb.1210.10020. [PubMed:23412059 ]
- Lim C, Kim J, Choi JN, Ponnusamy K, Jeon Y, Kim SU, Kim JG, Lee C: Identification, fermentation, and bioactivity against Xanthomonas oryzae of antimicrobial metabolites isolated from Phomopsis longicolla S1B4. J Microbiol Biotechnol. 2010 Mar;20(3):494-500. [PubMed:20372017 ]
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