NP-MRD: Showing NP-Card for Denthyrsinin (NP0073443)

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Record Information

Version

2.0

Created at

2022-04-28 18:41:50 UTC

Updated at

2022-04-28 18:41:50 UTC

NP-MRD ID

NP0073443

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Denthyrsinin

Description

1,5,7-Trimethoxyphenanthrene-2,6-diol belongs to the class of organic compounds known as phenanthrols. Phenanthrols are compounds containing a phenanthrene (or its hydrogenated derivative) to which a hydroxyl group is attached. Denthyrsinin is found in Cymbidium aloifolium, Cymbidium pendulum, Dendrobium densiflorum, Dendrobium thysiflorum, Tamus communis , Eulophia nuda , Nidema boothii, Scaphyglottis livida and Thunia alba. 1,5,7-Trimethoxyphenanthrene-2,6-diol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 40  0  0  0  0  0  0  0  0999 V2000
    4.7262    2.6260   -0.2255 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3973    1.2503   -0.2217 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0898    0.8252   -0.1259 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0473    1.7105   -0.0298 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7666    1.2073    0.0593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2545    2.1195    0.1481 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5488    1.7069    0.2287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8160    0.3620    0.2166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1344   -0.0290    0.2564 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1122    0.9393    0.3486 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7242    1.5516   -0.7668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4504   -1.3647    0.2041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7928   -1.7055    0.2487 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4529   -2.2939    0.1117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1060   -1.9158    0.0710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8007   -0.6003    0.1277 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5284   -0.1824    0.0525 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5544   -1.0704   -0.0360 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4342   -2.4298   -0.0353 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6381   -3.2202    1.1482 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8528   -0.5215   -0.1291 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8840   -1.4217   -0.2246 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7839    2.7021   -0.5886 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6079    3.0917    0.7858 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0550    3.1796   -0.9012 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2585    2.7680   -0.0266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0145    3.1834    0.1532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3357    2.4305    0.2999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1719    1.3530   -1.7130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7629    1.2038   -0.9309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7729    2.6543   -0.6588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0329   -2.6880    0.2106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7253   -3.3339    0.0704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4360   -2.6906   -0.0503 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6769   -3.4137    1.3743 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0936   -4.1832    1.1061 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1964   -2.6333    1.9772 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8540   -1.1673   -0.2967 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 21  2  0
 21 22  1  0
 21 18  1  0
 18 19  1  0
 19 20  1  0
 18 17  2  0
 17  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
  5  4  2  0
  4  3  1  0
 16 17  1  0
 16  8  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
 22 38  1  0
 20 35  1  0
 20 36  1  0
 20 37  1  0
  6 27  1  0
  7 28  1  0
 11 29  1  0
 11 30  1  0
 11 31  1  0
 13 32  1  0
 14 33  1  0
 15 34  1  0
  4 26  1  0
M  END


  Mrv1533004161520272D          

 22 24  0  0  0  0            999 V2000
    0.7954   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454    1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9829   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
  8 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
  3 21  2  0  0  0  0
 21 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0073443

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(O)C(OC)=C2C(C=CC3=C(OC)C(O)=CC=C23)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C17H16O5/c1-20-13-8-9-4-5-11-10(6-7-12(18)16(11)21-2)14(9)17(22-3)15(13)19/h4-8,18-19H,1-3H3

> <INCHI_KEY>
LLRLPRUFUGWYOL-UHFFFAOYSA-N

> <FORMULA>
C17H16O5

> <MOLECULAR_WEIGHT>
300.31

> <EXACT_MASS>
300.099773615

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
31.361540058934324

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1,5,7-trimethoxyphenanthrene-2,6-diol

> <ALOGPS_LOGP>
2.89

> <JCHEM_LOGP>
2.8720548889999997

> <ALOGPS_LOGS>
-3.81

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.844460079480402

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.02892932727001

> <JCHEM_PKA_STRONGEST_BASIC>
-4.4400981387140215

> <JCHEM_POLAR_SURFACE_AREA>
68.15

> <JCHEM_REFRACTIVITY>
82.30980000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.68e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,5,7-trimethoxyphenanthrene-2,6-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0       1.485  -2.874   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.255  -1.540   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.795  -1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.565  -0.206   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.105  -0.206   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.875   1.127   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.415   1.127   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.185  -0.206   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.725  -0.206   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      11.495   1.127   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      10.725   2.461   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.495  -1.540   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      13.035  -1.540   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      10.725  -2.874   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.185  -2.874   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.415  -1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.875  -1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.105  -2.874   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.875  -4.207   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.105  -5.541   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.565  -2.874   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       3.795  -4.207   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   21                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   17                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   16                                                  
CONECT    9    8   10   12                                                  
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    9   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15    8   17                                                  
CONECT   17   16    5   18                                                  
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18    3   22                                                  
CONECT   22   21                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₆O₅

Average Mass

300.3100 Da

Monoisotopic Mass

300.09977 Da

IUPAC Name

1,5,7-trimethoxyphenanthrene-2,6-diol

Traditional Name

1,5,7-trimethoxyphenanthrene-2,6-diol

CAS Registry Number

Not Available

SMILES

COC1=C(O)C(OC)=C2C(C=CC3=C(OC)C(O)=CC=C23)=C1

InChI Identifier

InChI=1S/C17H16O5/c1-20-13-8-9-4-5-11-10(6-7-12(18)16(11)21-2)14(9)17(22-3)15(13)19/h4-8,18-19H,1-3H3

InChI Key

LLRLPRUFUGWYOL-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cymbidium aloifolium	LOTUS Database	35616633
Cymbidium pendulum	Plant	KNApSAcK
Dendrobium densiflorum	Plant	KNApSAcK
Dendrobium thyrsiflorum	Plant	KNApSAcK
Dioscorea communis	Plant	KNApSAcK
Eulophia nuda	Plant	KNApSAcK
Nidema boothii	Plant	KNApSAcK
Scaphyglottis livida	Plant	KNApSAcK
Thunia alba	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenanthrols. Phenanthrols are compounds containing a phenanthrene (or its hydrogenated derivative) to which a hydroxyl group is attached.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Phenanthrols

Direct Parent

Phenanthrols

Alternative Parents

Substituents

Phenanthrol
2-naphthol
Naphthalene
Phenol ether
Anisole
1-hydroxy-2-unsubstituted benzenoid
Phenol
Alkyl aryl ether
Ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.89	ALOGPS
logP	2.87	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	9.03	ChemAxon
pKa (Strongest Basic)	-4.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	68.15 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	82.31 m³·mol⁻¹	ChemAxon
Polarizability	31.36 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11779542

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Denthyrsinin (NP0073443)

MOL for NP0073443 (Denthyrsinin)

3D MOL for NP0073443 (Denthyrsinin)

3D SDF for NP0073443 (Denthyrsinin)

3D-SDF for NP0073443 (Denthyrsinin)

PDB for NP0073443 (Denthyrsinin)

3D PDB for NP0073443 (Denthyrsinin)

SMILES for NP0073443 (Denthyrsinin)

INCHI for NP0073443 (Denthyrsinin)

Structure for NP0073443 (Denthyrsinin)

3D Structure for NP0073443 (Denthyrsinin)