NP-MRD: Showing NP-Card for Bannaxanthone H (NP0073385)

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Record Information

Version

2.0

Created at

2022-04-28 18:38:40 UTC

Updated at

2022-04-28 18:38:40 UTC

NP-MRD ID

NP0073385

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Bannaxanthone H

Description

(3R)-3,5,9-trihydroxy-2,2-dimethyl-11,11-bis(3-methylbut-2-en-1-yl)-2,3,4,10,11,12-hexahydro-1,7-dioxatetraphene-10,12-dione belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring. Bannaxanthone H is found in Garcina xipshuanbannaensis and Garcinia xipshuanbannaensis. Based on a literature review very few articles have been published on (3R)-3,5,9-trihydroxy-2,2-dimethyl-11,11-bis(3-methylbut-2-en-1-yl)-2,3,4,10,11,12-hexahydro-1,7-dioxatetraphene-10,12-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282220382D          

 35 38  0  0  1  0            999 V2000
    3.6850    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149   -0.8348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -0.6789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048    1.5039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546   -1.1466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0647   -1.3025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.2546    1.0361    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.5720    2.0071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9058    0.7243    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.0352    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5753    1.6598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    6.0194    3.4164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4118    2.8766    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1154    0.1007    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
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  8 16  1  0  0  0  0
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  2 20  1  0  0  0  0
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 32 33  1  0  0  0  0
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 21 35  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652304282220382D          

 35 38  0  0  1  0            999 V2000
    3.6850    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 21 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0073385

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC1(CC=C(C)C)C(=O)C(O)=CC2=C1C(=O)C1=C3OC(C)(C)[C@H](O)CC3=C(O)C=C1O2

> <INCHI_IDENTIFIER>
InChI=1S/C28H32O7/c1-14(2)7-9-28(10-8-15(3)4)23-20(13-18(30)26(28)33)34-19-12-17(29)16-11-21(31)27(5,6)35-25(16)22(19)24(23)32/h7-8,12-13,21,29-31H,9-11H2,1-6H3/t21-/m1/s1

> <INCHI_KEY>
DGXWRPLNNOCAPN-OAQYLSRUSA-N

> <FORMULA>
C28H32O7

> <MOLECULAR_WEIGHT>
480.557

> <EXACT_MASS>
480.21480337

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
51.5824868266943

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R)-3,5,9-trihydroxy-2,2-dimethyl-11,11-bis(3-methylbut-2-en-1-yl)-2,3,4,10,11,12-hexahydro-1,7-dioxatetraphene-10,12-dione

> <ALOGPS_LOGP>
3.19

> <JCHEM_LOGP>
4.401084929333335

> <ALOGPS_LOGS>
-4.96

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.903853270147824

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.652912745449926

> <JCHEM_PKA_STRONGEST_BASIC>
-3.33615678989275

> <JCHEM_POLAR_SURFACE_AREA>
113.29

> <JCHEM_REFRACTIVITY>
136.58710000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.31e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R)-3,5,9-trihydroxy-2,2-dimethyl-11,11-bis(3-methylbut-2-en-1-yl)-3,4-dihydro-1,7-dioxatetraphene-10,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.879   1.061   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.383  -0.394   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       6.375  -1.558   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       4.862  -1.267   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.358   0.188   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.366   1.352   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.862   2.807   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       2.846   0.479   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.838  -0.685   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.342  -2.140   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.854  -2.431   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.334  -3.304   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.326  -0.394   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.179   1.061   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.830   2.225   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       2.342   1.934   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -0.299   3.273   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.068   3.747   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -1.691   1.352   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.895  -0.685   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       9.903   0.479   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.399   1.934   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      10.407   3.098   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       7.887   2.225   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.125   3.747   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.562   4.301   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.800   5.823   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.601   6.790   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      11.236   6.377   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.759   3.273   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       7.102   4.775   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       5.974   5.823   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       6.318   7.324   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.502   5.370   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      11.415   0.188   0.000  0.00  0.00           O+0
CONECT    1    2    6   24                                                  
CONECT    2    1    3   20                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   11                                                  
CONECT    5    4    6    8                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5    9   16                                                  
CONECT    9    8   10   13                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10    4                                                       
CONECT   12   10                                                            
CONECT   13    9   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16   17   18                                             
CONECT   16   15    8                                                       
CONECT   17   15                                                            
CONECT   18   15                                                            
CONECT   19   14                                                            
CONECT   20    2   21                                                       
CONECT   21   20   22   35                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22    1   25   30                                             
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   24   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35   21                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₂O₇

Average Mass

480.5570 Da

Monoisotopic Mass

480.21480 Da

IUPAC Name

(3R)-3,5,9-trihydroxy-2,2-dimethyl-11,11-bis(3-methylbut-2-en-1-yl)-2,3,4,10,11,12-hexahydro-1,7-dioxatetraphene-10,12-dione

Traditional Name

(3R)-3,5,9-trihydroxy-2,2-dimethyl-11,11-bis(3-methylbut-2-en-1-yl)-3,4-dihydro-1,7-dioxatetraphene-10,12-dione

CAS Registry Number

Not Available

SMILES

CC(C)=CCC1(CC=C(C)C)C(=O)C(O)=CC2=C1C(=O)C1=C3OC(C)(C)[C@H](O)CC3=C(O)C=C1O2

InChI Identifier

InChI=1S/C28H32O7/c1-14(2)7-9-28(10-8-15(3)4)23-20(13-18(30)26(28)33)34-19-12-17(29)16-11-21(31)27(5,6)35-25(16)22(19)24(23)32/h7-8,12-13,21,29-31H,9-11H2,1-6H3/t21-/m1/s1

InChI Key

DGXWRPLNNOCAPN-OAQYLSRUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Garcina xipshuanbannaensis	-	KNApSAcK
Garcinia xipshuanbannaensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Xanthones

Alternative Parents

Substituents

Xanthone
2,2-dimethyl-1-benzopyran
Chromone
1-hydroxy-2-unsubstituted benzenoid
Pyranone
Alkyl aryl ether
Benzenoid
Pyran
Heteroaromatic compound
Vinylogous ester
Cyclic ketone
Secondary alcohol
Ketone
Oxacycle
Polyol
Ether
Enol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.19	ALOGPS
logP	4.4	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	6.65	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	136.59 m³·mol⁻¹	ChemAxon
Polarizability	51.58 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163028064

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Bannaxanthone H (NP0073385)

MOL for NP0073385 (Bannaxanthone H)

3D MOL for NP0073385 (Bannaxanthone H)

3D SDF for NP0073385 (Bannaxanthone H)

3D-SDF for NP0073385 (Bannaxanthone H)

PDB for NP0073385 (Bannaxanthone H)

3D PDB for NP0073385 (Bannaxanthone H)

SMILES for NP0073385 (Bannaxanthone H)

INCHI for NP0073385 (Bannaxanthone H)

Structure for NP0073385 (Bannaxanthone H)

3D Structure for NP0073385 (Bannaxanthone H)