NP-MRD: Showing NP-Card for Pyrinodemin B (NP0073149)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-28 18:24:45 UTC

Updated at

2022-04-28 18:24:45 UTC

NP-MRD ID

NP0073149

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pyrinodemin B

Description

Pyrinodemin B belongs to the class of organic compounds known as pyridines and derivatives. Pyridines and derivatives are compounds containing a pyridine ring, which is a six-member aromatic heterocycle which consists of one nitrogen atom and five carbon atoms. Pyrinodemin B is found in Amphimelon sp. SS955. Based on a literature review very few articles have been published on Pyrinodemin B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282220242D          

 41 44  0  0  1  0            999 V2000
    0.4006   -1.8125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1543   -2.1480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7063   -1.5350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2938   -0.8205    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4869   -0.9920    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0744   -0.2775    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6264    0.3356    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3801   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0945    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8090   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5235    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2380    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9524    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6669    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3814    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0958    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8103    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5248    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2393    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9537    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6682    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3827    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0971    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8116    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.8116   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0971   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3827   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7461   -0.1913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2310   -0.8587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0515   -0.7725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5364   -1.4399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3569   -1.3537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8418   -2.0211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6623   -1.9349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1472   -2.6023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9677   -2.5161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4527   -3.1836    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2731   -3.0973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6087   -2.3436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1238   -1.6762    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3033   -1.7624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  1  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  4  8  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 22 27  1  0  0  0  0
  6 28  1  6  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 36 41  1  0  0  0  0
M  END

     RDKit          3D

100103  0  0  0  0  0  0  0  0999 V2000
   11.0453   -1.5241   -2.4051 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4680   -2.2017   -1.2604 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6768   -1.4634   -0.1604 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.5005   -0.1362   -0.1172 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0777    0.5487   -1.2589 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8895    1.9931   -1.2030 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5650    2.6011   -1.1195 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6188    2.3280   -0.0228 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1238    0.9376    0.0218 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1401    0.7433    1.1678 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9288    1.5964    1.0970 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1002    1.4004   -0.1416 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5804    0.0036   -0.3104 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7128   -0.4464    0.8170 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4993    0.4416    0.9883 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6217    0.0035    2.1133 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0742   -1.3922    1.9420 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2374   -1.4673    0.6639 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8595   -0.5543    0.7007 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4558   -0.3632   -0.4535 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8160    0.0267   -0.1870 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6240   -0.7048   -1.1591 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0953   -0.5518   -1.2037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5672    0.8282   -1.4229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9885    1.1429   -1.4610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9248    0.6016   -2.4360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1952   -0.8236   -2.5795 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6491   -1.6667   -1.4801 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9253   -1.4397   -0.7838 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1578   -0.1816   -0.0834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6698    0.0283    1.2119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9657    1.2088    1.8313 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7241    2.2227    1.2574 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1639    1.9627    0.0139 N   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9060    0.8289   -0.6382 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9972   -0.0471    1.2426 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0936   -0.7617    1.9043 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7973   -2.2470    1.7519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3001   -2.3544    1.6057 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8093   -0.9526    1.6772 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.8528   -0.1700   -2.4057 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8727   -2.1255   -3.3107 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5996   -3.2689   -1.3300 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6895    0.4080    0.8154 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4153    2.4503   -2.1094 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4886    2.4262   -0.3129 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7215    3.7363   -1.1101 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9900    2.4634   -2.1131 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7617    3.0700   -0.0179 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1385    2.5219    0.9653 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6727    0.5925   -0.9417 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9335    0.2323    0.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9286   -0.3427    1.2160 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6893    1.0005    2.0962 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3129    1.4204    2.0122 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2157    2.6613    1.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2541    2.1093   -0.1113 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7087    1.6766   -1.0183 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3769   -0.7419   -0.4668 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9684   -0.0021   -1.2404 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2787   -0.5729    1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3266   -1.4664    0.5452 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9383    0.5021    0.0522 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8677    1.4589    1.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0805    0.0964    3.1027 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7323    0.6914    2.1139 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9154   -2.1096    1.8652 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4858   -1.6720    2.8342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0564   -2.5279    0.5584 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9341   -1.2597   -0.1814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7399    1.1440   -0.4538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3990   -1.8094   -1.0420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2288   -0.5214   -2.2122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5798   -1.0135   -0.3612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4098   -1.2236   -2.0860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9977    1.2169   -2.3302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1250    1.4504   -0.5752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4547    1.1095   -0.4085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0225    2.2848   -1.6090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5161    0.9757   -3.4735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8708    1.1796   -2.4101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0581   -0.9256   -3.3717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3813   -1.3185   -3.1728 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7581   -2.7240   -1.9298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8052   -1.8980   -0.7303 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8032   -1.5667   -1.5032 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0825   -2.3343   -0.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0822   -0.7623    1.6495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5916    1.3792    2.8334 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9434    3.1572    1.7803 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2817    0.6453   -1.6602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7419    0.9300    1.7734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1120   -0.4754    1.7700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9187   -0.5916    3.0312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0767   -2.8098    2.6809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3716   -2.7210    0.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0975   -2.8688    0.6428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8634   -2.9805    2.4184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4840   -0.6887    2.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5285    0.3343   -3.2919 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 31 32  1  0
 32 33  2  0
 33 34  1  0
 34 35  2  0
 21 36  1  0
 36 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  2  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  1 41  2  0
 40 19  1  0
 41  5  1  0
 35 30  1  0
 40 36  1  0
 12 57  1  0
 12 58  1  0
 13 59  1  0
 13 60  1  0
 14 61  1  0
 14 62  1  0
 15 63  1  0
 15 64  1  0
 16 65  1  0
 16 66  1  0
 17 67  1  0
 17 68  1  0
 18 69  1  0
 18 70  1  0
 21 71  1  6
 22 72  1  0
 22 73  1  0
 23 74  1  0
 23 75  1  0
 24 76  1  0
 24 77  1  0
 25 78  1  0
 25 79  1  0
 26 80  1  0
 26 81  1  0
 27 82  1  0
 27 83  1  0
 28 84  1  0
 28 85  1  0
 29 86  1  0
 29 87  1  0
 31 88  1  0
 32 89  1  0
 33 90  1  0
 35 91  1  0
 36 92  1  1
 37 93  1  0
 37 94  1  0
 38 95  1  0
 38 96  1  0
 39 97  1  0
 39 98  1  0
 40 99  1  1
 11 55  1  0
 11 56  1  0
 10 53  1  0
 10 54  1  0
  9 51  1  0
  9 52  1  0
  8 49  1  0
  8 50  1  0
  7 47  1  0
  7 48  1  0
  6 45  1  0
  6 46  1  0
  4 44  1  0
  2 43  1  0
  1 42  1  0
 41100  1  0
M  END


  Mrv1652304282220242D          

 41 44  0  0  1  0            999 V2000
    0.4006   -1.8125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1543   -2.1480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7063   -1.5350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2938   -0.8205    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4869   -0.9920    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0744   -0.2775    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6264    0.3356    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3801   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0945    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8090   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5235    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2380    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9524    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6669    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3814    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0958    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8103    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5248    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2393    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9537    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6682    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3827    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0971    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8116    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.8116   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0971   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3827   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7461   -0.1913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2310   -0.8587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0515   -0.7725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5364   -1.4399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3569   -1.3537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8418   -2.0211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6623   -1.9349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1472   -2.6023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9677   -2.5161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4527   -3.1836    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2731   -3.0973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6087   -2.3436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1238   -1.6762    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3033   -1.7624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  1  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  4  8  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 22 27  1  0  0  0  0
  6 28  1  6  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 36 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0073149

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C(CCCCCCN1O[C@@H](CCCCCCCCC2=CC=CN=C2)[C@H]2CCC[C@@H]12)CCCCCCC1=CN=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C37H59N3O/c1(2-4-6-10-14-21-33-23-19-28-38-31-33)3-5-9-13-17-30-40-36-26-18-25-35(36)37(41-40)27-16-12-8-7-11-15-22-34-24-20-29-39-32-34/h19-20,23-24,28-29,31-32,35-37H,1-18,21-22,25-27,30H2/t35-,36+,37-/m0/s1

> <INCHI_KEY>
AIAKLCWNBGONOV-QOEXFKEZSA-N

> <FORMULA>
C37H59N3O

> <MOLECULAR_WEIGHT>
561.899

> <EXACT_MASS>
561.465813532

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
100

> <JCHEM_AVERAGE_POLARIZABILITY>
72.33410122669463

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-{13-[(3S,3aS,6aR)-3-[8-(pyridin-3-yl)octyl]-hexahydro-1H-cyclopenta[c][1,2]oxazol-1-yl]tridecyl}pyridine

> <ALOGPS_LOGP>
9.04

> <JCHEM_LOGP>
10.299291195666667

> <ALOGPS_LOGS>
-7.52

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
6.220208967696525

> <JCHEM_POLAR_SURFACE_AREA>
38.25

> <JCHEM_REFRACTIVITY>
172.30329999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
23

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.69e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-{13-[(3S,3aS,6aR)-3-[8-(pyridin-3-yl)octyl]-hexahydrocyclopenta[c][1,2]oxazol-1-yl]tridecyl}pyridine

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       0.748  -3.383   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.155  -4.010   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.185  -2.865   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.415  -1.532   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.909  -1.852   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.139  -0.518   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.169   0.626   0.000  0.00  0.00           O+0
HETATM    8  N   UNK     0       2.576  -0.000   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       3.910   0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.243  -0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.577   0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.911   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.245   0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.578   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.912   0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      13.246   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.579   0.770   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      15.913   0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      17.247   0.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      18.580   0.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      19.914   0.770   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      21.248   0.000   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      22.581   0.770   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0      23.915   0.000   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0      23.915  -1.540   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      22.581  -2.310   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      21.248  -1.540   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -1.393  -0.357   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -2.298  -1.603   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -3.830  -1.442   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -4.735  -2.688   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -6.266  -2.527   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -7.171  -3.773   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -8.703  -3.612   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -9.608  -4.858   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -11.140  -4.697   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -12.045  -5.943   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -13.577  -5.782   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -14.203  -4.375   0.000  0.00  0.00           C+0
HETATM   40  N   UNK     0     -13.298  -3.129   0.000  0.00  0.00           N+0
HETATM   41  C   UNK     0     -11.766  -3.290   0.000  0.00  0.00           C+0
CONECT    1    2    5                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    8                                                  
CONECT    5    4    1    6                                                  
CONECT    6    5    7   28                                                  
CONECT    7    6    8                                                       
CONECT    8    7    4    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   27                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   22                                                       
CONECT   28    6   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37   41                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   36                                                       
MASTER        0    0    0    0    0    0    0    0   41    0   88    0
END

View in JSmol

Synonyms

Value	Source
Pyrinodemin-b	MeSH

Chemical Formula

C₃₇H₅₉N₃O

Average Mass

561.8990 Da

Monoisotopic Mass

561.46581 Da

IUPAC Name

3-{13-[(3S,3aS,6aR)-3-[8-(pyridin-3-yl)octyl]-hexahydro-1H-cyclopenta[c][1,2]oxazol-1-yl]tridecyl}pyridine

Traditional Name

3-{13-[(3S,3aS,6aR)-3-[8-(pyridin-3-yl)octyl]-hexahydrocyclopenta[c][1,2]oxazol-1-yl]tridecyl}pyridine

CAS Registry Number

Not Available

SMILES

C(CCCCCCN1O[C@@H](CCCCCCCCC2=CC=CN=C2)[C@H]2CCC[C@@H]12)CCCCCCC1=CN=CC=C1

InChI Identifier

InChI=1S/C37H59N3O/c1(2-4-6-10-14-21-33-23-19-28-38-31-33)3-5-9-13-17-30-40-36-26-18-25-35(36)37(41-40)27-16-12-8-7-11-15-22-34-24-20-29-39-32-34/h19-20,23-24,28-29,31-32,35-37H,1-18,21-22,25-27,30H2/t35-,36+,37-/m0/s1

InChI Key

AIAKLCWNBGONOV-QOEXFKEZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Amphimelon sp. SS955	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyridines and derivatives. Pyridines and derivatives are compounds containing a pyridine ring, which is a six-member aromatic heterocycle which consists of one nitrogen atom and five carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyridines and derivatives

Sub Class

Not Available

Direct Parent

Pyridines and derivatives

Alternative Parents

Substituents

Pyridine
Heteroaromatic compound
Isoxazolidine
Oxacycle
Azacycle
N-organohydroxylamine
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	9.04	ALOGPS
logP	10.3	ChemAxon
logS	-7.5	ALOGPS
pKa (Strongest Basic)	6.22	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	38.25 Å²	ChemAxon
Rotatable Bond Count	23	ChemAxon
Refractivity	172.3 m³·mol⁻¹	ChemAxon
Polarizability	72.33 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00033328

Chemspider ID

8613250

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10437827

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Pyrinodemin B (NP0073149)

MOL for NP0073149 (Pyrinodemin B)

3D MOL for NP0073149 (Pyrinodemin B)

3D SDF for NP0073149 (Pyrinodemin B)

3D-SDF for NP0073149 (Pyrinodemin B)

PDB for NP0073149 (Pyrinodemin B)

3D PDB for NP0073149 (Pyrinodemin B)

SMILES for NP0073149 (Pyrinodemin B)

INCHI for NP0073149 (Pyrinodemin B)

Structure for NP0073149 (Pyrinodemin B)

3D Structure for NP0073149 (Pyrinodemin B)