NP-MRD: Showing NP-Card for (+)-Diospyrolidone (NP0072855)

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Record Information

Version

2.0

Created at

2022-04-28 18:07:59 UTC

Updated at

2022-04-28 18:08:00 UTC

NP-MRD ID

NP0072855

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Diospyrolidone

Description

(1R,4R,5R,8R,13R,14R,17R,18R,19S)-4,5,9,9,13-pentamethyl-20-oxahexacyclo[17.2.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]Tricosane-10,21-dione belongs to the class of organic compounds known as delta valerolactones. These are cyclic organic compounds containing an oxan-2- one moiety. (+)-Diospyrolidone is found in Diospyros maritima . Based on a literature review very few articles have been published on (1R,4R,5R,8R,13R,14R,17R,18R,19S)-4,5,9,9,13-pentamethyl-20-oxahexacyclo[17.2.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]Tricosane-10,21-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282220082D          

 30 35  0  0  1  0            999 V2000
    5.5470    1.3515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9794    0.6489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8041    0.6721    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5872   -0.0769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7625   -0.1001    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3301    0.6024    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7223    1.3282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5054    0.5792    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1132   -0.1466    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5457   -0.8492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3703   -0.8259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2885   -0.1698    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8561    0.5327    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2483    1.2585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0730    1.2818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0314    0.5095    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    1.0716   -0.9189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0049   -0.5994    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6260    0.7832    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0360    1.3599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2416    1.1373    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0372    0.3380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  9 27  1  6  0  0  0
  6 28  1  6  0  0  0
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  4 30  1  0  0  0  0
M  END

     RDKit          3D

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    4.1082    0.4231    1.7787 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282220082D          

 30 35  0  0  1  0            999 V2000
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  4 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0072855

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)[C@@H]2CC[C@]3(C)[C@H](CC[C@@H]4[C@H]5[C@@H]6CC[C@@]5(CC[C@@]34C)C(=O)O6)[C@@]2(C)CCC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C27H40O3/c1-23(2)18-9-12-26(5)19(24(18,3)11-10-20(23)28)7-6-16-21-17-8-13-27(21,22(29)30-17)15-14-25(16,26)4/h16-19,21H,6-15H2,1-5H3/t16-,17+,18+,19-,21+,24+,25-,26-,27+/m1/s1

> <INCHI_KEY>
IMLYZVRFONVJHK-ZKQVNDDQSA-N

> <FORMULA>
C27H40O3

> <MOLECULAR_WEIGHT>
412.614

> <EXACT_MASS>
412.297745148

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
48.122144441106

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,4R,5R,8R,13R,14R,17R,18R,19S)-4,5,9,9,13-pentamethyl-20-oxahexacyclo[17.2.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tricosane-10,21-dione

> <ALOGPS_LOGP>
4.95

> <JCHEM_LOGP>
5.8880120666666675

> <ALOGPS_LOGS>
-6.28

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.962170441269624

> <JCHEM_PKA_STRONGEST_BASIC>
-6.962852602852246

> <JCHEM_POLAR_SURFACE_AREA>
43.370000000000005

> <JCHEM_REFRACTIVITY>
116.42779999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.19e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4R,5R,8R,13R,14R,17R,18R,19S)-4,5,9,9,13-pentamethyl-20-oxahexacyclo[17.2.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tricosane-10,21-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      10.354   2.523   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.162   1.211   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      12.701   1.255   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      10.429  -0.144   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.890  -0.187   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.083   1.125   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.815   2.479   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.543   1.081   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.811  -0.274   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.619  -1.585   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.158  -1.542   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.272  -0.317   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.465   0.994   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.197   2.349   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.736   2.393   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.925   0.951   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.193  -0.404   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.000  -1.715   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.540  -1.672   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.654  -0.030   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       3.743  -1.119   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       3.035   1.462   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.934   2.538   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.451   2.123   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.069   0.631   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.079  -1.629   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.015  -1.800   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.276   2.436   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      11.758  -0.923   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      10.527  -1.680   0.000  0.00  0.00           C+0
CONECT    1    2    7                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   29   30                                             
CONECT    5    4    6   11                                                  
CONECT    6    5    7    8   28                                             
CONECT    7    6    1                                                       
CONECT    8    6    9   15                                                  
CONECT    9    8   10   12   27                                             
CONECT   10    9   11                                                       
CONECT   11   10    5                                                       
CONECT   12    9   13   19   26                                             
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14    8                                                       
CONECT   16   13   17   23                                                  
CONECT   17   16   18   20   25                                             
CONECT   18   17   19                                                       
CONECT   19   18   12                                                       
CONECT   20   17   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   16   24                                                  
CONECT   24   23   25                                                       
CONECT   25   24   17                                                       
CONECT   26   12                                                            
CONECT   27    9                                                            
CONECT   28    6                                                            
CONECT   29    4                                                            
CONECT   30    4                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₀O₃

Average Mass

412.6140 Da

Monoisotopic Mass

412.29775 Da

IUPAC Name

(1R,4R,5R,8R,13R,14R,17R,18R,19S)-4,5,9,9,13-pentamethyl-20-oxahexacyclo[17.2.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tricosane-10,21-dione

Traditional Name

(1R,4R,5R,8R,13R,14R,17R,18R,19S)-4,5,9,9,13-pentamethyl-20-oxahexacyclo[17.2.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tricosane-10,21-dione

CAS Registry Number

Not Available

SMILES

CC1(C)[C@@H]2CC[C@]3(C)[C@H](CC[C@@H]4[C@H]5[C@@H]6CC[C@@]5(CC[C@@]34C)C(=O)O6)[C@@]2(C)CCC1=O

InChI Identifier

InChI=1S/C27H40O3/c1-23(2)18-9-12-26(5)19(24(18,3)11-10-20(23)28)7-6-16-21-17-8-13-27(21,22(29)30-17)15-14-25(16,26)4/h16-19,21H,6-15H2,1-5H3/t16-,17+,18+,19-,21+,24+,25-,26-,27+/m1/s1

InChI Key

IMLYZVRFONVJHK-ZKQVNDDQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Diospyros maritima	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as delta valerolactones. These are cyclic organic compounds containing an oxan-2- one moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Delta valerolactones

Direct Parent

Delta valerolactones

Alternative Parents

Substituents

Delta valerolactone
Delta_valerolactone
Gamma butyrolactone
Oxane
Tetrahydrofuran
Carboxylic acid ester
Ketone
Cyclic ketone
Monocarboxylic acid or derivatives
Oxacycle
Carboxylic acid derivative
Hydrocarbon derivative
Carbonyl group
Organic oxide
Organic oxygen compound
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.95	ALOGPS
logP	5.89	ChemAxon
logS	-6.3	ALOGPS
pKa (Strongest Acidic)	19.96	ChemAxon
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	43.37 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	116.43 m³·mol⁻¹	ChemAxon
Polarizability	48.12 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162982532

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Diospyrolidone (NP0072855)

MOL for NP0072855 ((+)-Diospyrolidone)

3D MOL for NP0072855 ((+)-Diospyrolidone)

3D SDF for NP0072855 ((+)-Diospyrolidone)

3D-SDF for NP0072855 ((+)-Diospyrolidone)

PDB for NP0072855 ((+)-Diospyrolidone)

3D PDB for NP0072855 ((+)-Diospyrolidone)

SMILES for NP0072855 ((+)-Diospyrolidone)

INCHI for NP0072855 ((+)-Diospyrolidone)

Structure for NP0072855 ((+)-Diospyrolidone)

3D Structure for NP0072855 ((+)-Diospyrolidone)