NP-MRD: Showing NP-Card for Cnidilin (NP0072800)

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Record Information

Version

2.0

Created at

2022-04-28 18:05:23 UTC

Updated at

2022-04-28 18:05:23 UTC

NP-MRD ID

NP0072800

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cnidilin

Description

9-Methoxy-4-[(3-methylbut-2-en-1-yl)oxy]-7H-furo[3,2-g]chromen-7-one, also known as isophellopterin, belongs to the class of organic compounds known as 8-methoxypsoralens. These are psoralens containing a methoxy group attached at the C8 position of the psoralen group. Cnidilin is found in Angelica dahurica, Angelica taiwaniana, Deverra triradiata, Dorstenia gigas, Glehnia littoralis, Hansenia weberbaueriana, Niphogeton ternata, Petroselinum crispum, Peucedanum japonicum, Thamnosma rhodesica and Zanthoxylum americanum. 9-Methoxy-4-[(3-methylbut-2-en-1-yl)oxy]-7H-furo[3,2-g]chromen-7-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 40  0  0  0  0  0  0  0  0999 V2000
   -5.2966    0.7344   -0.6784 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2659    0.0905   -1.4379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9957    0.1003   -0.8914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1193    1.1285   -1.1680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2236    2.2043   -1.9018 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1440    2.9317   -1.8976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2390    2.2663   -1.0778 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8363    1.1230   -0.6061 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4750    0.0839    0.2162 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7848    0.0437    0.7902 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8642   -0.5884    0.1380 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0526   -0.4505    1.0158 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0996    0.1754    0.5597 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1055    0.7371   -0.8029 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3046    0.3371    1.3964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3365   -0.9558    0.5067 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9443   -1.9850    1.3360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8473   -2.9901    1.5864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0899   -2.9222    1.0021 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8856   -3.8807    1.2692 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4337   -1.9289    0.2167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6138   -0.9331   -0.0638 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0944    1.1138   -1.3310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8990    1.6057   -0.1139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6601    0.0113    0.0801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9531    3.8696   -2.4147 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7751    2.5572   -0.8227 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6748   -1.6608   -0.0577 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0082   -0.0793   -0.8250 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0559   -0.8591    2.0150 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0422    1.2929   -1.0235 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8961   -0.0214   -1.5946 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2867    1.5097   -0.8417 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7833   -0.6624    1.5087 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0869    0.6924    2.4202 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0247    1.0805    0.9648 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0472   -1.9734    1.7602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5391   -3.7982    2.2376 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  3
 13 14  1  0
 13 15  1  0
  9 16  1  0
 16 22  2  0
 22 21  1  0
 21 19  1  0
 19 20  2  0
 19 18  1  0
 18 17  2  0
 22  3  1  0
  8  4  1  0
 17 16  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  6 26  1  0
  7 27  1  0
 11 28  1  0
 11 29  1  0
 12 30  1  0
 14 31  1  0
 14 32  1  0
 14 33  1  0
 15 34  1  0
 15 35  1  0
 15 36  1  0
 18 38  1  0
 17 37  1  0
M  END


  Mrv1533004201500242D          

 22 24  0  0  0  0            999 V2000
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812   -1.1104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102   -1.1104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812   -2.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -2.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -3.5854    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -3.9979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -5.2354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -6.0604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2089   -4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8532   -2.6029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3683   -1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8532   -1.2680    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  4 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 11 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  3 22  2  0  0  0  0
 18 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0072800

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C2OC=CC2=C(OCC=C(C)C)C2=C1OC(=O)C=C2

> <INCHI_IDENTIFIER>
InChI=1S/C17H16O5/c1-10(2)6-8-20-14-11-4-5-13(18)22-16(11)17(19-3)15-12(14)7-9-21-15/h4-7,9H,8H2,1-3H3

> <INCHI_KEY>
NNDOCYLWULORAM-UHFFFAOYSA-N

> <FORMULA>
C17H16O5

> <MOLECULAR_WEIGHT>
300.31

> <EXACT_MASS>
300.099773615

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
31.294037818260797

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
9-methoxy-4-[(3-methylbut-2-en-1-yl)oxy]-7H-furo[3,2-g]chromen-7-one

> <ALOGPS_LOGP>
3.58

> <JCHEM_LOGP>
2.988386574333333

> <ALOGPS_LOGS>
-3.88

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8668511969961

> <JCHEM_POLAR_SURFACE_AREA>
57.900000000000006

> <JCHEM_REFRACTIVITY>
82.43430000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.00e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
9-methoxy-4-[(3-methylbut-2-en-1-yl)oxy]furo[3,2-g]chromen-7-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-15         0                                  
HETATM    1  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       6.258  -0.533   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.591  -2.843   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       8.925  -2.073   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      10.259  -2.843   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      11.592  -2.073   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      10.259  -4.383   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.925  -5.153   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.591  -4.383   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.258  -5.153   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       6.258  -6.693   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       4.924  -7.463   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.924  -9.003   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.590  -9.773   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.590 -11.313   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.257  -9.003   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.924  -4.383   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.459  -4.859   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.554  -3.613   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       3.459  -2.367   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   22                                                  
CONECT    4    3    5   10                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9    4   11                                                  
CONECT   11   10   12   18                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   11   19   22                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21    3   18                                                  
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Value	Source
Isophellopterin	Kegg

Chemical Formula

C₁₇H₁₆O₅

Average Mass

300.3100 Da

Monoisotopic Mass

300.09977 Da

IUPAC Name

9-methoxy-4-[(3-methylbut-2-en-1-yl)oxy]-7H-furo[3,2-g]chromen-7-one

Traditional Name

9-methoxy-4-[(3-methylbut-2-en-1-yl)oxy]furo[3,2-g]chromen-7-one

CAS Registry Number

Not Available

SMILES

COC1=C2OC=CC2=C(OCC=C(C)C)C2=C1OC(=O)C=C2

InChI Identifier

InChI=1S/C17H16O5/c1-10(2)6-8-20-14-11-4-5-13(18)22-16(11)17(19-3)15-12(14)7-9-21-15/h4-7,9H,8H2,1-3H3

InChI Key

NNDOCYLWULORAM-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Angelica dahurica	LOTUS Database	35616633
Angelica taiwaniana	Plant	KNApSAcK
Deverra triradiata	LOTUS Database	35616633
Dorstenia gigas	Plant	KNApSAcK
Glehnia littoralis	LOTUS Database	35616633
Hansenia weberbaueriana	LOTUS Database	35616633
Niphogeton ternata	Plant	KNApSAcK
Petroselinum crispum	LOTUS Database	35616633
Peucedanum japonicum	LOTUS Database	35616633
Thamnosma rhodesica	LOTUS Database	35616633
Zanthoxylum americanum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 8-methoxypsoralens. These are psoralens containing a methoxy group attached at the C8 position of the psoralen group.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Furanocoumarins

Direct Parent

8-methoxypsoralens

Alternative Parents

Substituents

8-methoxypsoralen
Benzopyran
1-benzopyran
Benzofuran
Anisole
Alkyl aryl ether
Pyranone
Pyran
Benzenoid
Furan
Heteroaromatic compound
Lactone
Oxacycle
Ether
Organoheterocyclic compound
Organic oxygen compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

psoralens (CHEBI:81139 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.58	ALOGPS
logP	2.99	ChemAxon
logS	-3.9	ALOGPS
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	57.9 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	82.43 m³·mol⁻¹	ChemAxon
Polarizability	31.29 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00032846

Chemspider ID

Not Available

KEGG Compound ID

C17503

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

821449

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Cnidilin (NP0072800)

MOL for NP0072800 (Cnidilin)

3D MOL for NP0072800 (Cnidilin)

3D SDF for NP0072800 (Cnidilin)

3D-SDF for NP0072800 (Cnidilin)

PDB for NP0072800 (Cnidilin)

3D PDB for NP0072800 (Cnidilin)

SMILES for NP0072800 (Cnidilin)

INCHI for NP0072800 (Cnidilin)

Structure for NP0072800 (Cnidilin)

3D Structure for NP0072800 (Cnidilin)