NP-MRD: Showing NP-Card for (+)-Aristolide B (NP0072727)

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Record Information

Version

1.0

Created at

2022-04-28 18:01:45 UTC

Updated at

2022-04-28 18:01:45 UTC

NP-MRD ID

NP0072727

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Aristolide B

Description

Aristolide B belongs to the class of organic compounds known as phenanthrenes and derivatives. These are polycyclic compounds containing a phenanthrene moiety, which is a tricyclic aromatic compound with three non-linearly fused benzene. (+)-Aristolide B is found in Aristolochia cucurbitifolia, Aristolochia heterophylla and Aristolochia heterophylla Hemsl . It was first documented in 2022 (PMID: 35489810). Based on a literature review a significant number of articles have been published on Aristolide B (PMID: 35489783) (PMID: 35489789) (PMID: 35489756) (PMID: 35489754).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 34  0  0  0  0  0  0  0  0999 V2000
   -2.4833   -4.0581   -1.0589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6000   -3.2067   -0.8019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2115   -3.3885   -0.6305 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3517   -2.2667   -0.0427 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6861   -1.8258   -0.4783 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9684   -0.4054   -0.1178 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2808   -0.0400    0.0844 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5754    1.2981    0.3493 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5590    2.2278    0.4048 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2341    1.8793    0.2056 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9819    0.5517   -0.0519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3999    0.1185   -0.1855 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4752    0.9732   -0.2872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7393    0.4341   -0.5565 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9272   -0.9240   -0.7222 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8616   -1.7847   -0.6221 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6444   -1.2115   -0.3514 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5996    1.5219   -0.5968 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8124    2.7130   -0.7360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5713    2.3367   -0.1718 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3112   -2.3671    1.1013 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7962   -1.9427   -1.5627 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4548   -2.4778   -0.0079 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0763   -0.7621    0.0420 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6145    1.5615    0.5047 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7813    3.2610    0.6078 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4756    2.6358    0.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8873   -1.3490   -0.9300 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6572    2.9463   -1.8064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2771    3.5512   -0.1695 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6 11  2  0
 11 10  1  0
 10  9  2  0
  9  8  1  0
  8  7  2  0
 11 12  1  0
 12 17  2  0
 17 16  1  0
 16 15  2  0
 15 14  1  0
 14 13  2  0
 13 20  1  0
 20 19  1  0
 19 18  1  0
 16  2  1  0
 18 14  1  0
 17  4  1  0
  7  6  1  0
 13 12  1  0
  4 21  1  1
  5 22  1  0
  5 23  1  0
 10 27  1  0
  9 26  1  0
  8 25  1  0
  7 24  1  0
 15 28  1  0
 19 29  1  0
 19 30  1  0
M  END


  Mrv1652304282220012D          

 20 24  0  0  1  0            999 V2000
    0.4959   -2.4725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1525   -2.9826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0349   -3.7991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7310   -4.1056    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3794   -3.5955    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2619   -2.7789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1745   -2.4082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8600   -2.8672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8052   -3.6904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0649   -4.0546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8402   -4.8484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3503   -5.4968    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0158   -4.8799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5084   -2.3572    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2236   -1.5829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3993   -1.6144    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9184   -2.6761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0360   -1.8595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3876   -1.3494    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3784   -1.6559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  5 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  4 13  1  1  0  0  0
  8 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  7 16  1  0  0  0  0
  2 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
  1 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0072727

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O=C1O[C@H]2CC3=C(C=CC=C3)C3=C2C1=CC1=C3OCO1

> <INCHI_IDENTIFIER>
InChI=1S/C16H10O4/c17-16-10-6-12-15(19-7-18-12)14-9-4-2-1-3-8(9)5-11(20-16)13(10)14/h1-4,6,11H,5,7H2/t11-/m0/s1

> <INCHI_KEY>
OGIGOVQXGYADQG-NSHDSACASA-N

> <FORMULA>
C16H10O4

> <MOLECULAR_WEIGHT>
266.252

> <EXACT_MASS>
266.057908802

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
26.74535336112134

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(11S)-3,5,10-trioxapentacyclo[9.7.1.0^{2,6}.0^{8,19}.0^{13,18}]nonadeca-1(19),2(6),7,13(18),14,16-hexaen-9-one

> <ALOGPS_LOGP>
2.61

> <JCHEM_LOGP>
2.8980644873333334

> <ALOGPS_LOGS>
-3.45

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.346940999610126

> <JCHEM_PKA_STRONGEST_BASIC>
-4.766816111758411

> <JCHEM_POLAR_SURFACE_AREA>
44.760000000000005

> <JCHEM_REFRACTIVITY>
70.52080000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.54e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(11S)-3,5,10-trioxapentacyclo[9.7.1.0^{2,6}.0^{8,19}.0^{13,18}]nonadeca-1(19),2(6),7,13(18),14,16-hexaen-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       0.926  -4.615   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.285  -5.567   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.065  -7.092   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.365  -7.664   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.575  -6.712   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.356  -5.187   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.059  -4.495   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.339  -5.352   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.236  -6.889   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.855  -7.569   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.435  -9.050   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       4.387 -10.261   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       1.896  -9.109   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       6.549  -4.400   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       6.017  -2.955   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.479  -3.014   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.714  -4.995   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.934  -3.471   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.724  -2.519   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.706  -3.091   0.000  0.00  0.00           C+0
CONECT    1    2    6   20                                                  
CONECT    2    1    3   17                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   13                                                  
CONECT    5    4    6   10                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8   16                                                  
CONECT    8    7    9   14                                                  
CONECT    9    8   10                                                       
CONECT   10    9    5   11                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11    4                                                       
CONECT   14    8   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15    7                                                       
CONECT   17    2   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19    1                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₁₀O₄

Average Mass

266.2520 Da

Monoisotopic Mass

266.05791 Da

IUPAC Name

(11S)-3,5,10-trioxapentacyclo[9.7.1.0^{2,6}.0^{8,19}.0^{13,18}]nonadeca-1(19),2(6),7,13(18),14,16-hexaen-9-one

Traditional Name

(11S)-3,5,10-trioxapentacyclo[9.7.1.0^{2,6}.0^{8,19}.0^{13,18}]nonadeca-1(19),2(6),7,13(18),14,16-hexaen-9-one

CAS Registry Number

Not Available

SMILES

O=C1O[C@H]2CC3=C(C=CC=C3)C3=C2C1=CC1=C3OCO1

InChI Identifier

InChI=1S/C16H10O4/c17-16-10-6-12-15(19-7-18-12)14-9-4-2-1-3-8(9)5-11(20-16)13(10)14/h1-4,6,11H,5,7H2/t11-/m0/s1

InChI Key

OGIGOVQXGYADQG-NSHDSACASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aristolochia cucurbitifolia	LOTUS Database	35616633
Aristolochia heterophylla	LOTUS Database	35616633
Aristolochia heterophylla Hemsl	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenanthrenes and derivatives. These are polycyclic compounds containing a phenanthrene moiety, which is a tricyclic aromatic compound with three non-linearly fused benzene.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Not Available

Direct Parent

Phenanthrenes and derivatives

Alternative Parents

Substituents

Phenanthrene
Naphthofuran
Isobenzofuranone
Benzofuranone
Phthalide
Naphthalene
Benzodioxole
Isocoumaran
Lactone
Carboxylic acid ester
Acetal
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organic oxygen compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.61	ALOGPS
logP	2.9	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	13.35	ChemAxon
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	44.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	70.52 m³·mol⁻¹	ChemAxon
Polarizability	26.75 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00032728

Chemspider ID

8905773

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10730440

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Lukies M, Zia A, Kavnoudias H, Bosco JJ, Narita C, Lee R, Joseph T, Clements W: Immune Function After Splenic Artery Embolization for Blunt Trauma: Long-Term Assessment of CD27(+) IgM B-Cell Levels. J Vasc Interv Radiol. 2022 May;33(5):505-509. doi: 10.1016/j.jvir.2022.02.004. [PubMed:35489783 ]
Tugwell P, Tovey D: Editors' Choice March 2022: Harmonisation needed in a) assessing harms and b) guideline classification of certainty of evidence and strength. J Clin Epidemiol. 2022 Mar;143:A4-A5. doi: 10.1016/j.jclinepi.2022.01.019. [PubMed:35489810 ]
Bryce Y, Katzen B, Patel P, Moreira CC, Fakorede FA, Arya S, D'Andrea M, Mustapha J, Rowe V, Rosenfield K, Vedantham S, Abi-Jaoudeh N, Rochon PJ: Closing the Gaps in Racial Disparities in Critical Limb Ischemia Outcome and Amputation Rates: Proceedings from a Society of Interventional Radiology Foundation Research Consensus Panel. J Vasc Interv Radiol. 2022 May;33(5):593-602. doi: 10.1016/j.jvir.2022.02.010. [PubMed:35489789 ]
Yousef P, Ibrahim R, Boulos C, Khatab Z, Pasic M, Krizova A: Investigating miRNA-related Pathways Contributing to Kidney Cancer Pathogenesis. Anticancer Res. 2022 May;42(5):2355-2362. doi: 10.21873/anticanres.15714. [PubMed:35489756 ]
Han M, Yamaguchi S, Onishi M, Fujii T, Hosoya M, Wen X, Kido H, Kato S: The MDM2 and CDKN2A Copy-number-variation Influence the TP53-signature-score in Wild-type TP53 Luminal Type Breast Cancer. Anticancer Res. 2022 May;42(5):2277-2288. doi: 10.21873/anticanres.15707. [PubMed:35489754 ]

Showing NP-Card for (+)-Aristolide B (NP0072727)

MOL for NP0072727 ((+)-Aristolide B)

3D MOL for NP0072727 ((+)-Aristolide B)

3D SDF for NP0072727 ((+)-Aristolide B)

3D-SDF for NP0072727 ((+)-Aristolide B)

PDB for NP0072727 ((+)-Aristolide B)

3D PDB for NP0072727 ((+)-Aristolide B)

SMILES for NP0072727 ((+)-Aristolide B)

INCHI for NP0072727 ((+)-Aristolide B)

Structure for NP0072727 ((+)-Aristolide B)

3D Structure for NP0072727 ((+)-Aristolide B)