NP-MRD: Showing NP-Card for (-)-Tricalysioside G (NP0072498)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-28 17:50:53 UTC

Updated at

2022-04-28 17:50:54 UTC

NP-MRD ID

NP0072498

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Tricalysioside G

Description

(1R,4S,9R,12S,13S,16R,17R,18R)-17-hydroxy-12-methyl-7-oxo-17-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-8-oxapentacyclo[14.2.1.0¹,¹³.0⁴,¹².0⁵,⁹]Nonadec-5-en-18-yl acetate belongs to the class of organic compounds known as diterpene glycosides. These are diterpenoids in which an isoprene unit is glycosylated. (-)-Tricalysioside G is found in Diplospora dubia and Tricalysia dubia OHWI. Based on a literature review very few articles have been published on (1R,4S,9R,12S,13S,16R,17R,18R)-17-hydroxy-12-methyl-7-oxo-17-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-8-oxapentacyclo[14.2.1.0¹,¹³.0⁴,¹².0⁵,⁹]Nonadec-5-en-18-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282219502D          

 39 44  0  0  1  0            999 V2000
   -0.0198   -0.4226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4794    0.3106    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1538    0.6886    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7217    1.1458    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1924    0.3941    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8354   -0.3987    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0266    0.3786    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4512    1.0859    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0571    1.8177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2238    1.8393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2761    1.0718    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8386    1.6754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5864    1.3269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3078    1.7271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4861    0.5081    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6763    0.3504    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2516   -0.3569    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4268   -0.3428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6014   -0.3284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0227    1.6493    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7275    1.1383    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2802    1.7508    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5385    0.9870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8130    0.2089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6240    0.0576    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8984   -0.7204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7094   -0.8718    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2460   -0.2451    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9715    0.5329    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1605    0.6843    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8861    1.4623    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5081    1.1596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0570   -0.3964    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9838   -1.6498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7948   -1.8011    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0362    2.4742    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7573    2.8750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4649    2.4509    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7707    3.6999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  6  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
  8 11  1  6  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 16 15  1  6  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  7 18  1  0  0  0  0
  7 19  1  6  0  0  0
  4 20  1  0  0  0  0
 20 21  1  0  0  0  0
  2 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  1  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 25 30  1  0  0  0  0
 30 31  1  1  0  0  0
 29 32  1  6  0  0  0
 28 33  1  1  0  0  0
 27 34  1  6  0  0  0
 34 35  1  0  0  0  0
 20 36  1  6  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 37 39  1  0  0  0  0
M  END

     RDKit          3D

 79 84  0  0  0  0  0  0  0  0999 V2000
   -4.0008    1.1489    3.6722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7921    0.7839    2.8878 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6962    1.3790    3.0319 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8140   -0.2467    1.9441 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6940   -0.6111    1.1931 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0504   -0.4411   -0.2711 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2149    0.4837   -0.4661 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1759    1.2225   -1.7966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9408    2.0419   -1.7081 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7522    3.0269   -2.7818 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2710    3.3855   -3.9369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5494    4.4978   -4.5000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7721    5.0851   -5.5743 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5340    4.8051   -3.6053 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6073    3.9753   -2.4789 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6305    3.2350   -2.1372 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3991    2.0590   -1.2169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7139    1.1614   -1.7427 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3084    0.9005   -3.2037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8180   -0.1243   -1.0228 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5239   -1.3362   -1.9241 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4022   -2.5728   -1.0267 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4412   -2.6833   -0.0180 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6080   -1.8268   -0.5513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3144   -2.0742    1.3104 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3748   -2.6433    2.0823 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1031   -2.2746    2.1068 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0846   -1.8176    1.5903 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1718   -2.0439    2.3975 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7071   -0.8504    2.8448 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8295   -0.4391    2.1723 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8575    1.0859    2.1982 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8973    1.5782    3.4926 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8584   -0.8569    0.7305 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0365   -0.3392    0.1753 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9406   -2.3662    0.6460 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3882   -2.8263   -0.5371 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1990   -2.9683    1.7964 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1206   -3.2817    2.7944 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5664    1.9884    3.2199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7326    1.4400    4.7132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6278    0.2272    3.7654 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8517    0.0477    1.4899 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2007   -0.0129   -0.4069 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2298    1.2870    0.3258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1646    0.5107   -2.6455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0501    1.8814   -1.8278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9571    2.5899   -0.7437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1364    2.8731   -4.3679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9905    4.6062   -1.6435 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2274    2.9211   -3.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2936    3.9431   -1.5566 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3567    1.5004   -1.1615 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1495    2.4298   -0.2075 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7573    0.5967   -3.2279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3329    1.8734   -3.7739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9989    0.2519   -3.7312 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0866   -0.1495   -0.3332 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2828   -1.4700   -2.7089 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4574   -1.2445   -2.4195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5443   -3.4251   -1.7603 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6468   -2.7009   -0.7090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8461   -3.7153    0.0432 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4957   -1.9536    0.1040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8641   -2.0288   -1.5780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3478   -2.2714    2.9849 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0819   -3.3226    2.4317 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2428   -1.7159    3.0829 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7860   -2.5717    3.3180 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7742   -0.7766    2.6488 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7712    1.3714    1.6166 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9484    1.4634    1.7131 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6783    2.1560    3.6754 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0002   -0.5200    0.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3331   -0.9806   -0.5188 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0129   -2.7026    0.6405 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0699   -2.8724   -1.2546 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7011   -3.8904    1.4828 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6830   -3.6497    3.6024 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5 25  1  0
 25 26  1  1
 25 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 31 34  1  0
 34 35  1  0
 34 36  1  0
 36 37  1  0
 36 38  1  0
 38 39  1  0
 25 23  1  0
 23 24  1  0
 24  6  1  0
  6  7  1  1
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  6
 18 20  1  0
 20 21  1  0
 21 22  1  0
  6  5  1  0
 20  6  1  0
 38 29  1  0
 22 23  1  0
 18  9  1  0
 15 10  1  0
  1 40  1  0
  1 41  1  0
  1 42  1  0
  5 43  1  1
 26 66  1  0
 27 67  1  0
 27 68  1  0
 29 69  1  1
 31 70  1  1
 32 71  1  0
 32 72  1  0
 33 73  1  0
 34 74  1  6
 35 75  1  0
 36 76  1  1
 37 77  1  0
 38 78  1  6
 39 79  1  0
 23 63  1  1
 24 64  1  0
 24 65  1  0
  7 44  1  0
  7 45  1  0
  8 46  1  0
  8 47  1  0
  9 48  1  1
 11 49  1  0
 15 50  1  1
 16 51  1  0
 16 52  1  0
 17 53  1  0
 17 54  1  0
 19 55  1  0
 19 56  1  0
 19 57  1  0
 20 58  1  1
 21 59  1  0
 21 60  1  0
 22 61  1  0
 22 62  1  0
M  END


  Mrv1652304282219502D          

 39 44  0  0  1  0            999 V2000
   -0.0198   -0.4226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4794    0.3106    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1538    0.6886    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7217    1.1458    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1924    0.3941    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8354   -0.3987    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0266    0.3786    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4512    1.0859    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0571    1.8177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2238    1.8393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2761    1.0718    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8386    1.6754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5864    1.3269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3078    1.7271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4861    0.5081    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6763    0.3504    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2516   -0.3569    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4268   -0.3428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6014   -0.3284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0227    1.6493    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7275    1.1383    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2802    1.7508    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5385    0.9870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8130    0.2089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6240    0.0576    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8984   -0.7204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7094   -0.8718    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2460   -0.2451    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9715    0.5329    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1605    0.6843    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8861    1.4623    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5081    1.1596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0570   -0.3964    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9838   -1.6498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7948   -1.8011    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0362    2.4742    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7573    2.8750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4649    2.4509    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7707    3.6999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  6  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
  8 11  1  6  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 16 15  1  6  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  7 18  1  0  0  0  0
  7 19  1  6  0  0  0
  4 20  1  0  0  0  0
 20 21  1  0  0  0  0
  2 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  1  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 25 30  1  0  0  0  0
 30 31  1  1  0  0  0
 29 32  1  6  0  0  0
 28 33  1  1  0  0  0
 27 34  1  6  0  0  0
 34 35  1  0  0  0  0
 20 36  1  6  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 37 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0072498

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1[C@](O)(CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H]2C[C@@]11CC[C@@H]3C4=CC(=O)O[C@@H]4CC[C@@]3(C)[C@@H]1CC2

> <INCHI_IDENTIFIER>
InChI=1S/C28H40O11/c1-13(30)37-25-27-8-5-16-15-9-20(31)38-17(15)6-7-26(16,2)19(27)4-3-14(10-27)28(25,35)12-36-24-23(34)22(33)21(32)18(11-29)39-24/h9,14,16-19,21-25,29,32-35H,3-8,10-12H2,1-2H3/t14-,16-,17-,18-,19+,21-,22+,23-,24-,25-,26-,27-,28+/m1/s1

> <INCHI_KEY>
NCRXSARBPOHZRZ-HEEZPQMBSA-N

> <FORMULA>
C28H40O11

> <MOLECULAR_WEIGHT>
552.617

> <EXACT_MASS>
552.257062108

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
79

> <JCHEM_AVERAGE_POLARIZABILITY>
57.41004432659484

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,4S,9R,12S,13S,16R,17R,18R)-17-hydroxy-12-methyl-7-oxo-17-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-8-oxapentacyclo[14.2.1.0^{1,13}.0^{4,12}.0^{5,9}]nonadec-5-en-18-yl acetate

> <ALOGPS_LOGP>
0.00

> <JCHEM_LOGP>
-0.20160076166666752

> <ALOGPS_LOGS>
-2.88

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.118632652225587

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.777867987031129

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083423676078

> <JCHEM_POLAR_SURFACE_AREA>
172.21

> <JCHEM_REFRACTIVITY>
132.50829999999993

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.32e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4S,9R,12S,13S,16R,17R,18R)-17-hydroxy-12-methyl-7-oxo-17-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-8-oxapentacyclo[14.2.1.0^{1,13}.0^{4,12}.0^{5,9}]nonadec-5-en-18-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -0.037  -0.789   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.895   0.580   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.287   1.285   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.347   2.139   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.226   0.736   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.559  -0.744   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.783   0.707   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.576   2.027   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.840   3.393   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.284   3.433   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.115   2.001   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.165   3.127   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.561   2.477   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       9.908   3.224   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       8.374   0.948   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       6.862   0.654   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.070  -0.666   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.530  -0.640   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.989  -0.613   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.042   3.079   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.358   2.125   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -2.390   3.268   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -2.872   1.842   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -3.384   0.390   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -4.898   0.108   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -5.410  -1.345   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -6.924  -1.627   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -7.926  -0.458   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -7.414   0.995   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -5.900   1.277   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -5.387   2.730   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0      -8.415   2.165   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      -9.440  -0.740   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -7.436  -3.080   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -8.950  -3.362   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0      -0.068   4.619   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -1.414   5.367   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      -2.735   4.575   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -1.439   6.906   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   21                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   10   20                                             
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   18   19                                             
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9    4                                                       
CONECT   11    8   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   11   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17    7                                                       
CONECT   19    7                                                            
CONECT   20    4   21   36                                                  
CONECT   21   20    2   22   23                                             
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   30                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   34                                                  
CONECT   28   27   29   33                                                  
CONECT   29   28   30   32                                                  
CONECT   30   29   25   31                                                  
CONECT   31   30                                                            
CONECT   32   29                                                            
CONECT   33   28                                                            
CONECT   34   27   35                                                       
CONECT   35   34                                                            
CONECT   36   20   37                                                       
CONECT   37   36   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   88    0
END

View in JSmol

Synonyms

Value	Source
(1R,4S,9R,12S,13S,16R,17R,18R)-17-Hydroxy-12-methyl-7-oxo-17-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-8-oxapentacyclo[14.2.1.0,.0,.0,]nonadec-5-en-18-yl acetic acid	Generator

Chemical Formula

C₂₈H₄₀O₁₁

Average Mass

552.6170 Da

Monoisotopic Mass

552.25706 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1[C@](O)(CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H]2C[C@@]11CC[C@@H]3C4=CC(=O)O[C@@H]4CC[C@@]3(C)[C@@H]1CC2

InChI Identifier

InChI=1S/C28H40O11/c1-13(30)37-25-27-8-5-16-15-9-20(31)38-17(15)6-7-26(16,2)19(27)4-3-14(10-27)28(25,35)12-36-24-23(34)22(33)21(32)18(11-29)39-24/h9,14,16-19,21-25,29,32-35H,3-8,10-12H2,1-2H3/t14-,16-,17-,18-,19+,21-,22+,23-,24-,25-,26-,27-,28+/m1/s1

InChI Key

NCRXSARBPOHZRZ-HEEZPQMBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Diplospora dubia	LOTUS Database	35616633
Tricalysia dubia OHWI	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene glycosides. These are diterpenoids in which an isoprene unit is glycosylated.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Diterpene glycosides

Alternative Parents

Substituents

Diterpene glycoside
Diterpene lactone
Diterpenoid
17-oxasteroid
Steroid
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
2-furanone
Dicarboxylic acid or derivatives
Monosaccharide
Oxane
Enoate ester
Tertiary alcohol
Alpha,beta-unsaturated carboxylic ester
Cyclic alcohol
Dihydrofuran
Secondary alcohol
Carboxylic acid ester
Lactone
Acetal
Polyol
Carboxylic acid derivative
Organoheterocyclic compound
Oxacycle
Organooxygen compound
Primary alcohol
Alcohol
Carbonyl group
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0	ALOGPS
logP	-0.2	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	7.78	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	172.21 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	132.51 m³·mol⁻¹	ChemAxon
Polarizability	57.41 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

16738541

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

20056364

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Tricalysioside G (NP0072498)

MOL for NP0072498 ((-)-Tricalysioside G)

3D MOL for NP0072498 ((-)-Tricalysioside G)

3D SDF for NP0072498 ((-)-Tricalysioside G)

3D-SDF for NP0072498 ((-)-Tricalysioside G)

PDB for NP0072498 ((-)-Tricalysioside G)

3D PDB for NP0072498 ((-)-Tricalysioside G)

SMILES for NP0072498 ((-)-Tricalysioside G)

INCHI for NP0072498 ((-)-Tricalysioside G)

Structure for NP0072498 ((-)-Tricalysioside G)

3D Structure for NP0072498 ((-)-Tricalysioside G)