NP-MRD: Showing NP-Card for Spongioside B (NP0072349)

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Record Information

Version

2.0

Created at

2022-04-28 17:42:19 UTC

Updated at

2022-04-28 17:42:19 UTC

NP-MRD ID

NP0072349

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Spongioside B

Description

Spongioside b belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton. Thus, spongioside b is considered to be a sterol. Spongioside B is found in Dioscorea spongiosa. Based on a literature review very few articles have been published on Spongioside b.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282219422D          

 76 83  0  0  1  0            999 V2000
    6.1708   -0.2182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4511    0.5577    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9193    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1072    1.0432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5754    1.6739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7633    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    0.7528    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0148    0.1221    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8269    0.2673    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3587   -0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5466   -0.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7345   -0.6539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.9911    1.4918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0307   -0.9107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2632    0.7029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5435    1.4789    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.0117    2.1096    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2920    2.8855    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.1041    3.0307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    8.3844    3.8066    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    7.6011    5.8440    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7890    5.6987    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5087    4.9228    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.0405    4.2921    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6966    4.7776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2572    6.3295    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8814    6.6199    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9450    5.3585    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7602    3.5162    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9481    3.3710    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
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  7  6  1  6  0  0  0
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  7 16  1  0  0  0  0
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 75 76  1  0  0  0  0
M  END

     RDKit          3D

162169  0  0  0  0  0  0  0  0999 V2000
    5.0144    5.4186    3.0437 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2816    4.6356    3.0090 C   0  0  0  0  0  0  0  0  0  0  0  0
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    7.6549    0.8127    1.9026 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282219422D          

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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  7  6  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  0  0  0  0
  1 10  1  0  0  0  0
  9 11  1  1  0  0  0
  8 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
  7 16  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 15 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 21 27  1  6  0  0  0
 20 28  1  6  0  0  0
 18 29  1  1  0  0  0
 30 29  1  6  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 30 35  1  0  0  0  0
 35 36  1  1  0  0  0
 34 37  1  6  0  0  0
 33 38  1  1  0  0  0
 32 39  1  6  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 41 43  1  0  0  0  0
 15 44  1  1  0  0  0
  2 45  1  1  0  0  0
 46 45  1  6  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 46 51  1  0  0  0  0
 51 52  1  1  0  0  0
 53 52  1  1  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 53 58  1  0  0  0  0
 57 59  1  6  0  0  0
 56 60  1  1  0  0  0
 55 61  1  6  0  0  0
 54 62  1  6  0  0  0
 50 63  1  6  0  0  0
 49 64  1  1  0  0  0
 65 64  1  6  0  0  0
 65 66  1  0  0  0  0
 66 67  1  0  0  0  0
 67 68  1  0  0  0  0
 68 69  1  0  0  0  0
 69 70  1  0  0  0  0
 65 70  1  0  0  0  0
 69 71  1  1  0  0  0
 68 72  1  6  0  0  0
 67 73  1  1  0  0  0
 66 74  1  1  0  0  0
 48 75  1  6  0  0  0
 75 76  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0072349

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)CC[C@H](O)[C@@H](C)[C@H]1[C@H](C[C@H]2[C@@H]3CC=C4C[C@H](CC[C@]4(C)[C@H]3CC(=O)[C@]12C)O[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@@H](C)[C@H](O)[C@@H](O)[C@H]2O)[C@H](O)[C@H]1O[C@@H]1O[C@@H](C)[C@H](O)[C@@H](O)[C@H]1O)O[C@@H]1O[C@H](COC(C)=O)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C53H86O23/c1-20(2)9-12-30(56)21(3)35-31(72-50-44(66)41(63)38(60)33(74-50)19-68-24(6)55)16-29-27-11-10-25-15-26(13-14-52(25,7)28(27)17-34(57)53(29,35)8)71-51-47(76-49-43(65)40(62)37(59)23(5)70-49)45(67)46(32(18-54)73-51)75-48-42(64)39(61)36(58)22(4)69-48/h10,20-23,26-33,35-51,54,56,58-67H,9,11-19H2,1-8H3/t21-,22+,23+,26+,27-,28+,29+,30+,31+,32-,33-,35+,36+,37+,38-,39-,40-,41+,42-,43-,44-,45+,46-,47-,48+,49+,50-,51-,52+,53-/m1/s1

> <INCHI_KEY>
LTDYJAJKLBEZOH-IONCTZGUSA-N

> <FORMULA>
C53H86O23

> <MOLECULAR_WEIGHT>
1091.248

> <EXACT_MASS>
1090.555989029

> <JCHEM_ACCEPTOR_COUNT>
22

> <JCHEM_ATOM_COUNT>
162

> <JCHEM_AVERAGE_POLARIZABILITY>
115.59926162356408

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
12

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-{[(1S,2R,5S,10R,11S,13S,14R,15S)-5-{[(2R,3R,4S,5S,6R)-4-hydroxy-6-(hydroxymethyl)-3,5-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy})oxan-2-yl]oxy}-14-[(2S,3S)-3-hydroxy-6-methylheptan-2-yl]-2,15-dimethyl-16-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-13-yl]oxy}oxan-2-yl]methyl acetate

> <ALOGPS_LOGP>
0.49

> <JCHEM_LOGP>
-0.7203211636666685

> <ALOGPS_LOGS>
-2.87

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
8

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.187015581474466

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.751263652008921

> <JCHEM_PKA_STRONGEST_BASIC>
-3.649085003257065

> <JCHEM_POLAR_SURFACE_AREA>
359.9700000000001

> <JCHEM_REFRACTIVITY>
260.2120000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.48e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-{[(1S,2R,5S,10R,11S,13S,14R,15S)-5-{[(2R,3R,4S,5S,6R)-4-hydroxy-6-(hydroxymethyl)-3,5-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy})oxan-2-yl]oxy}-14-[(2S,3S)-3-hydroxy-6-methylheptan-2-yl]-2,15-dimethyl-16-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-13-yl]oxy}oxan-2-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      11.519  -0.407   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.042   1.041   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.049   2.218   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.533   1.947   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.541   3.125   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.025   2.854   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.502   1.405   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.494   0.228   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.010   0.499   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.003  -0.678   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.487  -0.949   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.971  -1.221   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.455  -1.492   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.932  -2.940   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.462  -0.314   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.986   1.134   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.770   2.079   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.495   1.215   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.923  -0.264   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.978  -1.480   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.452  -1.269   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.493  -2.485   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.018  -2.275   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -2.963  -3.490   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.383  -4.917   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -4.489  -3.280   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -0.128   0.157   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       2.558  -2.907   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       1.047   1.738   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       0.776   3.254   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -0.673   3.777   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -0.944   5.293   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.234   6.286   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       1.682   5.763   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       1.953   4.247   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       3.401   3.724   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0       2.859   6.756   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0      -0.038   7.802   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -2.392   5.817   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -3.570   4.824   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -3.298   3.308   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -4.476   2.315   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -1.850   2.785   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       3.791  -1.700   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      13.558   1.312   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      14.081   2.761   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      13.089   3.938   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      13.612   5.386   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      15.128   5.657   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      16.120   4.480   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      15.597   3.032   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      16.590   1.854   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      16.067   0.406   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      17.059  -0.771   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      16.536  -2.220   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      15.020  -2.491   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      14.028  -1.314   0.000  0.00  0.00           C+0
HETATM   58  O   UNK     0      14.551   0.135   0.000  0.00  0.00           O+0
HETATM   59  C   UNK     0      12.512  -1.585   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0      14.497  -3.939   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0      17.529  -3.397   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0      18.575  -0.500   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0      17.636   4.751   0.000  0.00  0.00           O+0
HETATM   64  O   UNK     0      15.651   7.106   0.000  0.00  0.00           O+0
HETATM   65  C   UNK     0      14.658   8.283   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      15.181   9.731   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      14.189  10.909   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0      12.673  10.638   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0      12.150   9.189   0.000  0.00  0.00           C+0
HETATM   70  O   UNK     0      13.142   8.012   0.000  0.00  0.00           O+0
HETATM   71  C   UNK     0      10.634   8.918   0.000  0.00  0.00           C+0
HETATM   72  O   UNK     0      11.680  11.815   0.000  0.00  0.00           O+0
HETATM   73  O   UNK     0      14.712  12.357   0.000  0.00  0.00           O+0
HETATM   74  O   UNK     0      16.697  10.002   0.000  0.00  0.00           O+0
HETATM   75  C   UNK     0      12.619   6.564   0.000  0.00  0.00           C+0
HETATM   76  O   UNK     0      11.103   6.292   0.000  0.00  0.00           O+0
CONECT    1    2   10                                                       
CONECT    2    1    3   45                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   16                                                  
CONECT    8    7    9   12                                                  
CONECT    9    8    4   10   11                                             
CONECT   10    9    1                                                       
CONECT   11    9                                                            
CONECT   12    8   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   19   44                                             
CONECT   16   15    7   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   29                                                  
CONECT   19   18   15   20                                                  
CONECT   20   19   21   28                                                  
CONECT   21   20   22   27                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24                                                            
CONECT   27   21                                                            
CONECT   28   20                                                            
CONECT   29   18   30                                                       
CONECT   30   29   31   35                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   39                                                  
CONECT   33   32   34   38                                                  
CONECT   34   33   35   37                                                  
CONECT   35   34   30   36                                                  
CONECT   36   35                                                            
CONECT   37   34                                                            
CONECT   38   33                                                            
CONECT   39   32   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41                                                            
CONECT   44   15                                                            
CONECT   45    2   46                                                       
CONECT   46   45   47   51                                                  
CONECT   47   46   48                                                       
CONECT   48   47   49   75                                                  
CONECT   49   48   50   64                                                  
CONECT   50   49   51   63                                                  
CONECT   51   50   46   52                                                  
CONECT   52   51   53                                                       
CONECT   53   52   54   58                                                  
CONECT   54   53   55   62                                                  
CONECT   55   54   56   61                                                  
CONECT   56   55   57   60                                                  
CONECT   57   56   58   59                                                  
CONECT   58   57   53                                                       
CONECT   59   57                                                            
CONECT   60   56                                                            
CONECT   61   55                                                            
CONECT   62   54                                                            
CONECT   63   50                                                            
CONECT   64   49   65                                                       
CONECT   65   64   66   70                                                  
CONECT   66   65   67   74                                                  
CONECT   67   66   68   73                                                  
CONECT   68   67   69   72                                                  
CONECT   69   68   70   71                                                  
CONECT   70   69   65                                                       
CONECT   71   69                                                            
CONECT   72   68                                                            
CONECT   73   67                                                            
CONECT   74   66                                                            
CONECT   75   48   76                                                       
CONECT   76   75                                                            
MASTER        0    0    0    0    0    0    0    0   76    0  166    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₅₃H₈₆O₂₃

Average Mass

1091.2480 Da

Monoisotopic Mass

1090.55599 Da

IUPAC Name

[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-{[(1S,2R,5S,10R,11S,13S,14R,15S)-5-{[(2R,3R,4S,5S,6R)-4-hydroxy-6-(hydroxymethyl)-3,5-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy})oxan-2-yl]oxy}-14-[(2S,3S)-3-hydroxy-6-methylheptan-2-yl]-2,15-dimethyl-16-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-13-yl]oxy}oxan-2-yl]methyl acetate

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(C)CC[C@H](O)[C@@H](C)[C@H]1[C@H](C[C@H]2[C@@H]3CC=C4C[C@H](CC[C@]4(C)[C@H]3CC(=O)[C@]12C)O[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@@H](C)[C@H](O)[C@@H](O)[C@H]2O)[C@H](O)[C@H]1O[C@@H]1O[C@@H](C)[C@H](O)[C@@H](O)[C@H]1O)O[C@@H]1O[C@H](COC(C)=O)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C53H86O23/c1-20(2)9-12-30(56)21(3)35-31(72-50-44(66)41(63)38(60)33(74-50)19-68-24(6)55)16-29-27-11-10-25-15-26(13-14-52(25,7)28(27)17-34(57)53(29,35)8)71-51-47(76-49-43(65)40(62)37(59)23(5)70-49)45(67)46(32(18-54)73-51)75-48-42(64)39(61)36(58)22(4)69-48/h10,20-23,26-33,35-51,54,56,58-67H,9,11-19H2,1-8H3/t21-,22+,23+,26+,27-,28+,29+,30+,31+,32-,33-,35+,36+,37+,38-,39-,40-,41+,42-,43-,44-,45+,46-,47-,48+,49+,50-,51-,52+,53-/m1/s1

InChI Key

LTDYJAJKLBEZOH-IONCTZGUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dioscorea spongiosa	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal glycosides

Alternative Parents

Substituents

Diterpene glycoside
Cholesterol
Cholestane-skeleton
Steroidal glycoside
Oligosaccharide
Hydroxy bile acid, alcohol, or derivatives
Monohydroxy bile acid, alcohol, or derivatives
Bile acid, alcohol, or derivatives
22-hydroxysteroid
Diterpenoid
Hydroxysteroid
Oxosteroid
12-oxosteroid
Delta-5-steroid
Terpene glycoside
O-glycosyl compound
Glycosyl compound
Oxane
Carboxylic acid ester
Ketone
Secondary alcohol
Polyol
Carboxylic acid derivative
Acetal
Oxacycle
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Organic oxide
Primary alcohol
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.49	ALOGPS
logP	-0.72	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	11.75	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	22	ChemAxon
Hydrogen Donor Count	12	ChemAxon
Polar Surface Area	359.97 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	260.21 m³·mol⁻¹	ChemAxon
Polarizability	115.6 Å³	ChemAxon
Number of Rings	8	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00032188

Chemspider ID

9204731

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11029557

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Spongioside B (NP0072349)

MOL for NP0072349 (Spongioside B)

3D MOL for NP0072349 (Spongioside B)

3D SDF for NP0072349 (Spongioside B)

3D-SDF for NP0072349 (Spongioside B)

PDB for NP0072349 (Spongioside B)

3D PDB for NP0072349 (Spongioside B)

SMILES for NP0072349 (Spongioside B)

INCHI for NP0072349 (Spongioside B)

Structure for NP0072349 (Spongioside B)

3D Structure for NP0072349 (Spongioside B)