NP-MRD: Showing NP-Card for Bistratamide B (NP0071989)

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Record Information

Version

2.0

Created at

2022-04-28 17:22:39 UTC

Updated at

2022-04-28 17:22:39 UTC

NP-MRD ID

NP0071989

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Bistratamide B

Description

(4R,7S,8S,11R,15S,18R)-18-benzyl-7,11-dimethyl-4-(propan-2-yl)-6-oxa-13,20-dithia-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1⁵,⁸.1¹²,¹⁵]Tetracosa-1(21),2,5(24),9,12(23),16,19(22)-heptaene-2,9,16-triol belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone. Bistratamide B is found in Lissoclinum bistratum. Based on a literature review very few articles have been published on (4R,7S,8S,11R,15S,18R)-18-benzyl-7,11-dimethyl-4-(propan-2-yl)-6-oxa-13,20-dithia-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1⁵,⁸.1¹²,¹⁵]Tetracosa-1(21),2,5(24),9,12(23),16,19(22)-heptaene-2,9,16-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282219222D          

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M  END

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  2  3  1  1  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  6 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 13 17  2  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 22 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
  2 29  1  0  0  0  0
 29 30  2  0  0  0  0
 27 31  1  6  0  0  0
 18 32  1  6  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 33 38  1  0  0  0  0
  1 39  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0071989

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@H]1NC(=O)C2=CSC(=N2)[C@@H](CC2=CC=CC=C2)NC(=O)[C@H]2CSC(=N2)[C@@H](C)NC(=O)[C@H]2N=C1O[C@H]2C

> <INCHI_IDENTIFIER>
InChI=1S/C27H32N6O4S2/c1-13(2)20-25-33-21(15(4)37-25)24(36)28-14(3)26-30-18(11-38-26)22(34)29-17(10-16-8-6-5-7-9-16)27-31-19(12-39-27)23(35)32-20/h5-9,12-15,17-18,20-21H,10-11H2,1-4H3,(H,28,36)(H,29,34)(H,32,35)/t14-,15+,17-,18-,20-,21+/m1/s1

> <INCHI_KEY>
BRLJUCBNCZSZRH-NVXKLDSZSA-N

> <FORMULA>
C27H32N6O4S2

> <MOLECULAR_WEIGHT>
568.71

> <EXACT_MASS>
568.192645882

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
58.40128377518711

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4R,7S,8S,11R,15S,18R)-18-benzyl-7,11-dimethyl-4-(propan-2-yl)-6-oxa-13,20-dithia-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),12(23),19(22)-tetraene-2,9,16-trione

> <ALOGPS_LOGP>
2.77

> <JCHEM_LOGP>
2.635891888

> <ALOGPS_LOGS>
-4.47

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.183789133387949

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.590532771272061

> <JCHEM_PKA_STRONGEST_BASIC>
1.1917572447913805

> <JCHEM_POLAR_SURFACE_AREA>
134.14000000000001

> <JCHEM_REFRACTIVITY>
147.80859999999993

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.93e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4R,7S,8S,11R,15S,18R)-18-benzyl-4-isopropyl-7,11-dimethyl-6-oxa-13,20-dithia-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),12(23),19(22)-tetraene-2,9,16-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -1.049   3.284   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.083   4.328   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       1.426   3.575   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       1.445   2.035   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -0.405   1.885   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.788   1.281   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.807  -0.259   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.150  -1.012   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.483  -1.045   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       4.112   2.067   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       5.455   1.314   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.474  -0.226   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.779   2.100   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       6.760   3.640   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       8.085   4.426   0.000  0.00  0.00           C+0
HETATM   16  S   UNK     0       9.043   3.141   0.000  0.00  0.00           S+0
HETATM   17  C   UNK     0       8.289   1.798   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.066   5.966   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0       6.723   6.720   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0       6.704   8.260   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.028   9.046   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       5.361   9.013   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.867  10.472   0.000  0.00  0.00           C+0
HETATM   24  S   UNK     0       3.327  10.453   0.000  0.00  0.00           S+0
HETATM   25  C   UNK     0       2.694   8.981   0.000  0.00  0.00           C+0
HETATM   26  N   UNK     0       4.037   8.227   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0       1.369   8.194   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0       1.388   6.654   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0       0.064   5.868   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -1.279   6.622   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       0.026   8.948   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.390   6.752   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.733   5.999   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      12.057   6.785   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      13.400   6.031   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      13.419   4.492   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      12.095   3.705   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      10.752   4.459   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -2.559   3.585   0.000  0.00  0.00           C+0
CONECT    1    2    5   39                                                  
CONECT    2    1    3   29                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4    1                                                       
CONECT    6    4    7   10                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    6   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16   13                                                       
CONECT   18   15   19   32                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   26                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25   22                                                       
CONECT   27   25   28   31                                                  
CONECT   28   27   29                                                       
CONECT   29   28    2   30                                                  
CONECT   30   29                                                            
CONECT   31   27                                                            
CONECT   32   18   33                                                       
CONECT   33   32   34   38                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   33                                                       
CONECT   39    1                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   86    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₂N₆O₄S₂

Average Mass

568.7100 Da

Monoisotopic Mass

568.19265 Da

IUPAC Name

(4R,7S,8S,11R,15S,18R)-18-benzyl-7,11-dimethyl-4-(propan-2-yl)-6-oxa-13,20-dithia-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),12(23),19(22)-tetraene-2,9,16-trione

Traditional Name

(4R,7S,8S,11R,15S,18R)-18-benzyl-4-isopropyl-7,11-dimethyl-6-oxa-13,20-dithia-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),12(23),19(22)-tetraene-2,9,16-trione

CAS Registry Number

Not Available

SMILES

CC(C)[C@H]1NC(=O)C2=CSC(=N2)[C@@H](CC2=CC=CC=C2)NC(=O)[C@H]2CSC(=N2)[C@@H](C)NC(=O)[C@H]2N=C1O[C@H]2C

InChI Identifier

InChI=1S/C27H32N6O4S2/c1-13(2)20-25-33-21(15(4)37-25)24(36)28-14(3)26-30-18(11-38-26)22(34)29-17(10-16-8-6-5-7-9-16)27-31-19(12-39-27)23(35)32-20/h5-9,12-15,17-18,20-21H,10-11H2,1-4H3,(H,28,36)(H,29,34)(H,32,35)/t14-,15+,17-,18-,20-,21+/m1/s1

InChI Key

BRLJUCBNCZSZRH-NVXKLDSZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lissoclinum bistratum	Animalia	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Cyclic peptides

Alternative Parents

Substituents

Cyclic alpha peptide
Imidothiolactone
Benzenoid
Monocyclic benzene moiety
Heteroaromatic compound
Cyclic carboximidic acid
Meta-thiazoline
Thiazole
Oxazoline
Azole
Imido ester
Oxacycle
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Polyol
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.77	ALOGPS
logP	2.64	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	10.59	ChemAxon
pKa (Strongest Basic)	1.19	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	134.14 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	147.81 m³·mol⁻¹	ChemAxon
Polarizability	58.4 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163047702

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Bistratamide B (NP0071989)

MOL for NP0071989 (Bistratamide B)

3D MOL for NP0071989 (Bistratamide B)

3D SDF for NP0071989 (Bistratamide B)

3D-SDF for NP0071989 (Bistratamide B)

PDB for NP0071989 (Bistratamide B)

3D PDB for NP0071989 (Bistratamide B)

SMILES for NP0071989 (Bistratamide B)

INCHI for NP0071989 (Bistratamide B)

Structure for NP0071989 (Bistratamide B)

3D Structure for NP0071989 (Bistratamide B)