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Record Information
Version2.0
Created at2022-04-28 17:20:14 UTC
Updated at2022-04-28 17:20:14 UTC
NP-MRD IDNP0071946
Secondary Accession NumbersNone
Natural Product Identification
Common NameAgatharesinol
DescriptionAgatharesinol belongs to the class of organic compounds known as lignans, neolignans and related compounds. These are plant products of low molecular weight formed primarily from oxidative coupling of two p-propylphenol moieties. They can also be described as micromolecules with two phenylpropanoid units coupled together. They can be attached in various manners, like C5-C5', C8-C8'. Most known natural lignans are oxidized at C9 and C9´ and, based upon the way in which oxygen is incorporated into the skeleton and on the cyclization patterns, a wide range of lignans of very different structural types can be formed. Agatharesinol is found in Agathis australis , Agathis vitiensis, Chamaecyparis pisifera, Cryptomeria japonica, Metasequoia glyptostroboides, Metasequoia glyptostroboides Hu et Cheng., Sequoiadendron gigantea and Taxodium distichum. Agatharesinol was first documented in 2005 (PMID: 17191998). Based on a literature review a small amount of articles have been published on agatharesinol (PMID: 34963379) (PMID: 28314158) (PMID: 26895336) (PMID: 23157009).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC17H18O4
Average Mass286.3270 Da
Monoisotopic Mass286.12051 Da
IUPAC Name(2S,3S,4E)-3,5-bis(4-hydroxyphenyl)pent-4-ene-1,2-diol
Traditional Nameagatharesinol
CAS Registry NumberNot Available
SMILES
OC[C@@H](O)[C@@H](\C=C\C1=CC=C(O)C=C1)C1=CC=C(O)C=C1
InChI Identifier
InChI=1S/C17H18O4/c18-11-17(21)16(13-4-8-15(20)9-5-13)10-3-12-1-6-14(19)7-2-12/h1-10,16-21H,11H2/b10-3+/t16-,17+/m0/s1
InChI KeyDVUXXXYVVWRAIA-UDEVJOAWSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Agathis australisPlant
Agathis vitiensisLOTUS Database
Chamaecyparis pisiferaLOTUS Database
Cryptomeria japonicaPlant
Metasequoia glyptostroboidesLOTUS Database
Metasequoia glyptostroboides Hu et Cheng.Plant
Sequoiadendron giganteaPlant
Taxodium distichumLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as lignans, neolignans and related compounds. These are plant products of low molecular weight formed primarily from oxidative coupling of two p-propylphenol moieties. They can also be described as micromolecules with two phenylpropanoid units coupled together. They can be attached in various manners, like C5-C5', C8-C8'. Most known natural lignans are oxidized at C9 and C9´ and, based upon the way in which oxygen is incorporated into the skeleton and on the cyclization patterns, a wide range of lignans of very different structural types can be formed.
KingdomOrganic compounds
Super ClassLignans, neolignans and related compounds
ClassNot Available
Sub ClassNot Available
Direct ParentLignans, neolignans and related compounds
Alternative Parents
Substituents
  • Norlignan skeleton
  • Cinnamylphenol
  • Linear 1,3-diarylpropanoid
  • Fatty alcohol
  • Styrene
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Monocyclic benzene moiety
  • Fatty acyl
  • Benzenoid
  • 1,2-diol
  • Secondary alcohol
  • Alcohol
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Primary alcohol
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.76ALOGPS
logP2.37ChemAxon
logS-3.7ALOGPS
pKa (Strongest Acidic)9.21ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area80.92 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity82.44 m³·mol⁻¹ChemAxon
Polarizability30.82 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00031571
Chemspider ID20124407
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15558522
PDB IDNot Available
ChEBI ID53627
Good Scents IDNot Available
References
General References
  1. Thamnarak W, Eurtivong C, Pollawatn R, Ruchirawat S, Thasana N: Two new nor-lignans, siamensinols A and B, from Selaginella siamensis Hieron. and their biological activities. Nat Prod Res. 2021 Dec 29:1-9. doi: 10.1080/14786419.2021.2022664. [PubMed:34963379 ]
  2. Kato-Noguchi H, Nakamura K, Ohno O, Suenaga K, Okuda N: Asparagus decline: Autotoxicity and autotoxic compounds in asparagus rhizomes. J Plant Physiol. 2017 Jun;213:23-29. doi: 10.1016/j.jplph.2017.02.011. Epub 2017 Mar 1. [PubMed:28314158 ]
  3. Nakaba S, Arakawa I, Morimoto H, Nakada R, Bito N, Imai T, Funada R: Agatharesinol biosynthesis-related changes of ray parenchyma in sapwood sticks of Cryptomeria japonica during cell death. Planta. 2016 May;243(5):1225-36. doi: 10.1007/s00425-016-2473-y. Epub 2016 Feb 19. [PubMed:26895336 ]
  4. Li XN, Chu C, Cheng DP, Tong SQ, Yan JZ: Norlignans from Asparagus cochinchinensis. Nat Prod Commun. 2012 Oct;7(10):1357-8. [PubMed:23157009 ]
  5. Zhang YM, Tan NH, Yang YB, Lu Y, Cao P, Wu YS: Norlignans from Sequoia sempervirens. Chem Biodivers. 2005 Apr;2(4):497-505. doi: 10.1002/cbdv.200590030. [PubMed:17191998 ]