NP-MRD: Showing NP-Card for Sarmentamide B (NP0071807)

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Record Information

Version

2.0

Created at

2022-04-28 17:09:17 UTC

Updated at

2022-04-28 17:09:17 UTC

NP-MRD ID

NP0071807

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Sarmentamide B

Description

1-[(3S)-3alpha,4beta-Diacetoxypyrrolizino]-3-phenyl-2-propene-1-one belongs to the class of organic compounds known as cinnamic acids and derivatives. These are organic aromatic compounds containing a benzene and a carboxylic acid group (or a derivative thereof) forming 3-phenylprop-2-enoic acid. Sarmentamide B is found in Piper sarmentosum . Based on a literature review very few articles have been published on 1-[(3S)-3alpha,4beta-Diacetoxypyrrolizino]-3-phenyl-2-propene-1-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 42 43  0  0  0  0  0  0  0  0999 V2000
   -3.4702    3.5458    1.8783 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2532    2.5758    0.7695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7180    2.7898   -0.3932 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5501    1.4004    0.9113 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3214    0.4611   -0.1001 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8993    0.1686   -0.3886 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5018   -0.9204    0.4440 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8302   -1.2539    0.7872 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9916   -2.2704    1.5491 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9779   -0.4967    0.3123 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1944   -0.8414    0.6553 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3933   -0.1450    0.2289 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4162    0.9587   -0.5836 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6124    1.5606   -0.9404 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8282    1.0874   -0.5028 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8201   -0.0154    0.3100 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6272   -0.6089    0.6609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6777   -1.6238    0.8771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8641   -0.9221    0.2794 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2827   -1.5171   -0.9372 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5627   -1.9092   -1.2155 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9210   -2.5320   -2.5305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4446   -1.7305   -0.3247 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6121    3.5843    2.5809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6939    4.5557    1.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3851    3.2560    2.4498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8068    0.8368   -1.0261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8372   -0.1987   -1.4557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2262    1.0436   -0.3497 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8191    0.3453   -0.3206 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2841   -1.7085    1.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4619    1.3500   -0.9416 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6080    2.4268   -1.5797 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7631    1.5649   -0.7869 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7879   -0.3808    0.6500 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6485   -1.4861    1.3094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7341   -1.5218    1.9923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5947   -2.6825    0.5796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6883   -0.7995    1.0049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5200   -1.8005   -3.0982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5148   -3.4518   -2.4091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9841   -2.6944   -3.0939 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 19  5  1  0
 17 12  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  5 27  1  6
  6 28  1  0
  6 29  1  0
 18 37  1  0
 18 38  1  0
 19 39  1  1
 22 40  1  0
 22 41  1  0
 22 42  1  0
 10 30  1  0
 11 31  1  0
 13 32  1  0
 14 33  1  0
 15 34  1  0
 16 35  1  0
 17 36  1  0
M  END


  Mrv1652304282219092D          

 23 24  0  0  1  0            999 V2000
    3.4186   -3.0215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1637   -3.8062    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3387   -3.8062    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0837   -3.0215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512   -2.5366    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512   -1.7116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0367   -1.2991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8538   -4.4736    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0333   -4.3874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5484   -5.0548    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6977   -3.6337    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6486   -4.4736    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4691   -4.3874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8046   -3.6337    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9540   -5.0548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 10 15  1  0  0  0  0
  3 16  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
  2 20  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0071807

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1CN(C[C@@H]1OC(C)=O)C(=O)\C=C\C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C17H19NO5/c1-12(19)22-15-10-18(11-16(15)23-13(2)20)17(21)9-8-14-6-4-3-5-7-14/h3-9,15-16H,10-11H2,1-2H3/b9-8+/t15-,16-/m0/s1

> <INCHI_KEY>
BLUFKOASZPTGNZ-FHQWLQQXSA-N

> <FORMULA>
C17H19NO5

> <MOLECULAR_WEIGHT>
317.341

> <EXACT_MASS>
317.126322716

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
33.05382156191045

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,4S)-4-(acetyloxy)-1-[(2E)-3-phenylprop-2-enoyl]pyrrolidin-3-yl acetate

> <ALOGPS_LOGP>
1.77

> <JCHEM_LOGP>
1.2265517709999996

> <ALOGPS_LOGS>
-3.08

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.47103228015441945

> <JCHEM_POLAR_SURFACE_AREA>
72.91

> <JCHEM_REFRACTIVITY>
82.93450000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.63e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S)-4-(acetyloxy)-1-[(2E)-3-phenylprop-2-enoyl]pyrrolidin-3-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.381  -5.640   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.906  -7.105   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.366  -7.105   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.890  -5.640   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0       5.136  -4.735   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0       5.136  -3.195   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.802  -2.425   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       6.469  -2.425   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.469  -0.885   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.803  -0.115   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.803   1.425   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.137   2.195   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.470   1.425   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.470  -0.115   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.137  -0.885   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.460  -8.351   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       1.929  -8.190   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.024  -9.436   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.302  -6.783   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       6.811  -8.351   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       8.342  -8.190   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       8.969  -6.783   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       9.247  -9.436   0.000  0.00  0.00           C+0
CONECT    1    2    5                                                       
CONECT    2    1    3   20                                                  
CONECT    3    2    4   16                                                  
CONECT    4    3    5                                                       
CONECT    5    4    1    6                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   10                                                       
CONECT   16    3   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20    2   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   48    0
END

View in JSmol

Synonyms

Value	Source
1-[(3S)-3a,4b-Diacetoxypyrrolizino]-3-phenyl-2-propene-1-one	Generator
1-[(3S)-3Α,4β-diacetoxypyrrolizino]-3-phenyl-2-propene-1-one	Generator

Chemical Formula

C₁₇H₁₉NO₅

Average Mass

317.3410 Da

Monoisotopic Mass

317.12632 Da

IUPAC Name

(3S,4S)-4-(acetyloxy)-1-[(2E)-3-phenylprop-2-enoyl]pyrrolidin-3-yl acetate

Traditional Name

(3S,4S)-4-(acetyloxy)-1-[(2E)-3-phenylprop-2-enoyl]pyrrolidin-3-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1CN(C[C@@H]1OC(C)=O)C(=O)\C=C\C1=CC=CC=C1

InChI Identifier

InChI=1S/C17H19NO5/c1-12(19)22-15-10-18(11-16(15)23-13(2)20)17(21)9-8-14-6-4-3-5-7-14/h3-9,15-16H,10-11H2,1-2H3/b9-8+/t15-,16-/m0/s1

InChI Key

BLUFKOASZPTGNZ-FHQWLQQXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Piper sarmentosum	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cinnamic acids and derivatives. These are organic aromatic compounds containing a benzene and a carboxylic acid group (or a derivative thereof) forming 3-phenylprop-2-enoic acid.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Not Available

Direct Parent

Cinnamic acids and derivatives

Alternative Parents

Substituents

Cinnamic acid or derivatives
N-acylpyrrolidine
Styrene
Monocyclic benzene moiety
Dicarboxylic acid or derivatives
Benzenoid
Pyrrolidine
Tertiary carboxylic acid amide
Carboxamide group
Carboxylic acid ester
Carboxylic acid derivative
Azacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Carbonyl group
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.77	ALOGPS
logP	1.23	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Basic)	-0.47	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	72.91 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	82.93 m³·mol⁻¹	ChemAxon
Polarizability	33.05 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9813021

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11638279

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Sarmentamide B (NP0071807)

MOL for NP0071807 (Sarmentamide B)

3D MOL for NP0071807 (Sarmentamide B)

3D SDF for NP0071807 (Sarmentamide B)

3D-SDF for NP0071807 (Sarmentamide B)

PDB for NP0071807 (Sarmentamide B)

3D PDB for NP0071807 (Sarmentamide B)

SMILES for NP0071807 (Sarmentamide B)

INCHI for NP0071807 (Sarmentamide B)

Structure for NP0071807 (Sarmentamide B)

3D Structure for NP0071807 (Sarmentamide B)