NP-MRD: Showing NP-Card for Rubianoside II (NP0071766)

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Record Information

Version

2.0

Created at

2022-04-28 17:06:31 UTC

Updated at

2022-04-28 17:06:31 UTC

NP-MRD ID

NP0071766

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Rubianoside II

Description

(2R,3R,4S,5S,6R)-2-{[(1S,2S,5S,6S,8R,9S,10R,14S,17S,19S,21S)-8,21-dihydroxy-2,5,10,14,18,18-hexamethyl-6-(propan-2-yl)pentacyclo[11.8.0.0²,¹⁰.0⁵,⁹.0¹⁴,¹⁹]Henicos-12-en-17-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Rubianoside II is found in Rubia yunnanensis. Based on a literature review very few articles have been published on (2R,3R,4S,5S,6R)-2-{[(1S,2S,5S,6S,8R,9S,10R,14S,17S,19S,21S)-8,21-dihydroxy-2,5,10,14,18,18-hexamethyl-6-(propan-2-yl)pentacyclo[11.8.0.0²,¹⁰.0⁵,⁹.0¹⁴,¹⁹]Henicos-12-en-17-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282219062D          

 44 49  0  0  1  0            999 V2000
    4.8390    0.3498    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2623    1.0579    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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  1  2  1  6  0  0  0
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  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
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 37 41  1  6  0  0  0
 41 42  1  0  0  0  0
 41 43  1  0  0  0  0
  2 44  1  6  0  0  0
M  END

     RDKit          3D

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 10 60  1  0
 11 61  1  0
 11 62  1  0
 12 63  1  0
 12 64  1  0
 14 65  1  0
 14 66  1  0
 14 67  1  0
 15 68  1  6
 43103  1  6
 44104  1  0
 42101  1  0
 42102  1  0
 41100  1  6
 39 94  1  0
 39 95  1  0
 39 96  1  0
 40 97  1  0
 40 98  1  0
 40 99  1  0
 25 82  1  1
 24 80  1  0
 24 81  1  0
 23 78  1  0
 23 79  1  0
 22 75  1  0
 22 76  1  0
 22 77  1  0
 17 69  1  0
 18 70  1  0
 18 71  1  0
 20 72  1  0
 20 73  1  0
 20 74  1  0
 27 83  1  1
 29 84  1  1
 30 85  1  0
 30 86  1  0
 31 87  1  0
 32 88  1  6
 33 89  1  0
 34 90  1  6
 35 91  1  0
 36 92  1  6
 37 93  1  0
M  END


  Mrv1652304282219062D          

 44 49  0  0  1  0            999 V2000
    4.8390    0.3498    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2623    1.0579    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8607    1.7785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0358    1.7911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6125    1.0830    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0141    0.3623    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5908   -0.3458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7659   -0.3333    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3643    0.3874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7876    1.0955    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3860    1.8162    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5611    1.8287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1378    1.1206    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5394    0.4000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1161   -0.3082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2912   -0.2956    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1104    0.4250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3129    1.1332    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3800    1.5809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2966    1.9580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9353    0.4376    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3369    1.1583    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9136    1.8664    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3152    2.5870    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1401    2.5996    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5634    1.8915    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1618    1.1708    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5851    0.4627    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3883    1.9040    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5417    3.3202    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8919    3.2951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2935    4.0158    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9410   -0.3207    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8093    2.5243    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4157   -0.3583    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2109    1.8036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0666    0.8741    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1403    0.0524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3816   -0.2717    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1979   -1.0759    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6880    1.4167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5288    2.2262    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4687    1.1499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7573    1.7179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
 10  9  1  1  0  0  0
  5 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 13 12  1  1  0  0  0
 13 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 13 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 17 21  1  6  0  0  0
 22 21  1  1  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 22 27  1  0  0  0  0
 27 28  1  6  0  0  0
 26 29  1  1  0  0  0
 25 30  1  6  0  0  0
 24 31  1  1  0  0  0
 31 32  1  0  0  0  0
 14 33  1  6  0  0  0
 11 34  1  6  0  0  0
  6 35  1  6  0  0  0
  5 36  1  1  0  0  0
  2 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
  1 39  1  0  0  0  0
 39 40  1  1  0  0  0
 37 41  1  6  0  0  0
 41 42  1  0  0  0  0
 41 43  1  0  0  0  0
  2 44  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0071766

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@@H]1C[C@@H](O)[C@H]2[C@@]1(C)CC[C@@]1(C)[C@@H]3[C@@H](O)C[C@@H]4C(C)(C)[C@H](CC[C@]4(C)C3=CC[C@]21C)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C36H60O8/c1-18(2)20-15-22(39)30-34(20,6)13-14-35(7)26-19(9-12-36(30,35)8)33(5)11-10-25(32(3,4)24(33)16-21(26)38)44-31-29(42)28(41)27(40)23(17-37)43-31/h9,18,20-31,37-42H,10-17H2,1-8H3/t20-,21-,22+,23+,24+,25-,26-,27+,28-,29+,30-,31-,33+,34-,35-,36+/m0/s1

> <INCHI_KEY>
XXLKHIOYFWRVBV-WKKDFVIHSA-N

> <FORMULA>
C36H60O8

> <MOLECULAR_WEIGHT>
620.868

> <EXACT_MASS>
620.428818892

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
104

> <JCHEM_AVERAGE_POLARIZABILITY>
71.80498656820494

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3R,4S,5S,6R)-2-{[(1S,2S,5S,6S,8R,9S,10R,14S,17S,19S,21S)-8,21-dihydroxy-2,5,10,14,18,18-hexamethyl-6-(propan-2-yl)pentacyclo[11.8.0.0^{2,10}.0^{5,9}.0^{14,19}]henicos-12-en-17-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
3.58

> <JCHEM_LOGP>
3.0017475709999983

> <ALOGPS_LOGS>
-4.52

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.20008519579524

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.21054884302896

> <JCHEM_PKA_STRONGEST_BASIC>
-0.1571937007453884

> <JCHEM_POLAR_SURFACE_AREA>
139.84

> <JCHEM_REFRACTIVITY>
167.5791

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.88e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4S,5S,6R)-2-{[(1S,2S,5S,6S,8R,9S,10R,14S,17S,19S,21S)-8,21-dihydroxy-6-isopropyl-2,5,10,14,18,18-hexamethylpentacyclo[11.8.0.0^{2,10}.0^{5,9}.0^{14,19}]henicos-12-en-17-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       9.033   0.653   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.823   1.975   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.073   3.320   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.534   3.343   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.743   2.022   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.493   0.676   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.703  -0.645   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.163  -0.622   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.413   0.723   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.204   2.045   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.454   3.390   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.914   3.414   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.124   2.092   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.874   0.747   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.083  -0.575   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.543  -0.552   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.206   0.793   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.584   2.115   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.709   2.951   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.554   3.655   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.746   0.817   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -2.496   2.162   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -1.705   3.484   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -2.455   4.829   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -3.995   4.853   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -4.785   3.531   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -4.035   2.185   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -4.826   0.864   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      -6.325   3.554   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      -4.744   6.198   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -1.665   6.151   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -2.414   7.496   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       3.623  -0.599   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       5.244   4.712   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       8.243  -0.669   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       5.994   3.367   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      11.324   1.632   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      11.462   0.098   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      10.046  -0.507   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0       9.703  -2.008   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      12.484   2.645   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      12.187   4.156   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      13.941   2.146   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      10.747   3.207   0.000  0.00  0.00           C+0
CONECT    1    2    6   39                                                  
CONECT    2    1    3   37   44                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   10   36                                             
CONECT    6    5    1    7   35                                             
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9    5   11                                                  
CONECT   11   10   12   34                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   18                                                  
CONECT   14   13    9   15   33                                             
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   21                                                  
CONECT   18   17   13   19   20                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   17   22                                                       
CONECT   22   21   23   27                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   31                                                  
CONECT   25   24   26   30                                                  
CONECT   26   25   27   29                                                  
CONECT   27   26   22   28                                                  
CONECT   28   27                                                            
CONECT   29   26                                                            
CONECT   30   25                                                            
CONECT   31   24   32                                                       
CONECT   32   31                                                            
CONECT   33   14                                                            
CONECT   34   11                                                            
CONECT   35    6                                                            
CONECT   36    5                                                            
CONECT   37    2   38   41                                                  
CONECT   38   37   39                                                       
CONECT   39   38    1   40                                                  
CONECT   40   39                                                            
CONECT   41   37   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41                                                            
CONECT   44    2                                                            
MASTER        0    0    0    0    0    0    0    0   44    0   98    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₆H₆₀O₈

Average Mass

620.8680 Da

Monoisotopic Mass

620.42882 Da

IUPAC Name

(2R,3R,4S,5S,6R)-2-{[(1S,2S,5S,6S,8R,9S,10R,14S,17S,19S,21S)-8,21-dihydroxy-2,5,10,14,18,18-hexamethyl-6-(propan-2-yl)pentacyclo[11.8.0.0^{2,10}.0^{5,9}.0^{14,19}]henicos-12-en-17-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

(2R,3R,4S,5S,6R)-2-{[(1S,2S,5S,6S,8R,9S,10R,14S,17S,19S,21S)-8,21-dihydroxy-6-isopropyl-2,5,10,14,18,18-hexamethylpentacyclo[11.8.0.0^{2,10}.0^{5,9}.0^{14,19}]henicos-12-en-17-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CC(C)[C@@H]1C[C@@H](O)[C@H]2[C@@]1(C)CC[C@@]1(C)[C@@H]3[C@@H](O)C[C@@H]4C(C)(C)[C@H](CC[C@]4(C)C3=CC[C@]21C)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C36H60O8/c1-18(2)20-15-22(39)30-34(20,6)13-14-35(7)26-19(9-12-36(30,35)8)33(5)11-10-25(32(3,4)24(33)16-21(26)38)44-31-29(42)28(41)27(40)23(17-37)43-31/h9,18,20-31,37-42H,10-17H2,1-8H3/t20-,21-,22+,23+,24+,25-,26-,27+,28-,29+,30-,31-,33+,34-,35-,36+/m0/s1

InChI Key

XXLKHIOYFWRVBV-WKKDFVIHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Rubia yunnanensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
1-hydroxysteroid
15-hydroxysteroid
Hydroxysteroid
Delta-5-steroid
Steroid
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Oxane
Monosaccharide
Cyclic alcohol
Secondary alcohol
Polyol
Organoheterocyclic compound
Oxacycle
Acetal
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.58	ALOGPS
logP	3	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-0.16	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	139.84 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	167.58 m³·mol⁻¹	ChemAxon
Polarizability	71.8 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162955250

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Rubianoside II (NP0071766)

MOL for NP0071766 (Rubianoside II)

3D MOL for NP0071766 (Rubianoside II)

3D SDF for NP0071766 (Rubianoside II)

3D-SDF for NP0071766 (Rubianoside II)

PDB for NP0071766 (Rubianoside II)

3D PDB for NP0071766 (Rubianoside II)

SMILES for NP0071766 (Rubianoside II)

INCHI for NP0071766 (Rubianoside II)

Structure for NP0071766 (Rubianoside II)

3D Structure for NP0071766 (Rubianoside II)