NP-MRD: Showing NP-Card for Riparoside B (NP0071720)

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Record Information

Version

2.0

Created at

2022-04-28 17:03:59 UTC

Updated at

2022-04-28 17:03:59 UTC

NP-MRD ID

NP0071720

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Riparoside B

Description

(1S,2S,5S,7S,10R,11S,13S,14R,15S)-14-(acetyloxy)-5-{[(2S,3R,4S,5R,6R)-4,5-dihydroxy-3-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}-6-({[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-13-yl (4S)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoate belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton. Riparoside B is found in Smilax riparia. Based on a literature review very few articles have been published on (1S,2S,5S,7S,10R,11S,13S,14R,15S)-14-(acetyloxy)-5-{[(2S,3R,4S,5R,6R)-4,5-dihydroxy-3-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}-6-({[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-13-yl (4S)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282219042D          

 75 82  0  0  1  0            999 V2000
    4.2475    2.1537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5278    1.3777    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9960    0.7470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1838    0.8922    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9035    1.6682    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4354    2.2989    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0914    1.8134    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5596    1.1827    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8399    0.4067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6520    0.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7475    1.3279    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4672    2.1038    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9990    2.7345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8111    2.5893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3574    2.0770    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5867    1.2845    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0962    0.8215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.5825    1.7588    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2132    2.2906    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.9891    2.0103    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.4746    3.3542    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -5.2921    3.3830    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5535    4.4466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5528    3.4925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0592    4.1438    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.1073    2.8462    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6232    2.4441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.8717    1.8632    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5914    2.6391    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1232    3.2699    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9354    3.1246    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.2157    2.3487    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6838    1.7180    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9641    0.9421    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4323    0.3114    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7126   -0.4646    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    5.0884   -0.1741    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    4.2763   -0.0289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.0278    2.2035    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4672    3.7553    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8429    4.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0308    4.1910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7505    4.9669    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9384    5.1121    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6581    5.8881    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1899    6.5188    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0020    6.3735    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2823    5.5976    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5339    7.0043    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9096    7.2947    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8460    6.0333    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4066    4.4814    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  7 14  1  6  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 11 17  1  6  0  0  0
 16 18  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
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 31 32  1  1  0  0  0
 30 33  1  6  0  0  0
 29 34  1  6  0  0  0
 28 35  1  6  0  0  0
 35 36  1  0  0  0  0
 23 37  1  6  0  0  0
 15 38  1  6  0  0  0
 38 39  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
 12 42  1  6  0  0  0
  5 43  1  6  0  0  0
  2 44  1  6  0  0  0
 45 44  1  1  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 45 50  1  0  0  0  0
 50 51  1  1  0  0  0
 52 51  1  1  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
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 49 62  1  6  0  0  0
 48 63  1  6  0  0  0
 47 64  1  6  0  0  0
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 66 65  1  1  0  0  0
 66 67  1  0  0  0  0
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 70 72  1  6  0  0  0
 69 73  1  1  0  0  0
 68 74  1  6  0  0  0
 67 75  1  6  0  0  0
M  END

     RDKit          3D

159166  0  0  0  0  0  0  0  0999 V2000
    7.1796   -3.7304    0.0544 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1584   -2.7923    0.5714 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6698   -3.0104    1.7066 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7265   -1.6804   -0.1619 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7637   -0.8664    0.4215 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2060    0.5694    0.5819 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9059    1.0800   -0.5161 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1113    1.8091   -0.4131 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5357    1.9853    0.7293 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7140    2.2773   -1.6807 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1463    3.6939   -1.5491 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2058    4.0105   -0.5416 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.3856    5.5869   -0.6169 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5663    3.5301   -0.9376 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8641    2.2191   -0.9551 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.8566    1.5806    0.2781 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.2591    1.4845    0.6545 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3814    0.5452    1.6464 C   0  0  2  0  0  0  0  0  0  0  0  0
   13.7247    0.7497    2.3301 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7482    2.0291    2.8683 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3260   -0.8741    1.0775 C   0  0  2  0  0  0  0  0  0  0  0  0
   13.5679   -1.1282    0.4949 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.2350   -0.8831    0.0191 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.8194   -0.7984   -1.2190 O   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.5720    1.2096   -0.8208 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9082    3.5681   -0.0141 C   0  0  2  0  0  0  0  0  0  0  0  0
  -10.3435    4.8429   -0.2520 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2748    3.4121    1.4259 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -6.7820   -5.5824   -2.2839 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.6426   -1.1090   -0.8226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7188    0.0363   -0.5145 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7845    0.9972   -1.6703 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282219042D          

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    4.1899    6.5188    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0020    6.3735    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2823    5.5976    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5339    7.0043    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9096    7.2947    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8460    6.0333    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4066    4.4814    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  7 14  1  6  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 11 17  1  6  0  0  0
 16 18  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 26 31  1  0  0  0  0
 31 32  1  1  0  0  0
 30 33  1  6  0  0  0
 29 34  1  6  0  0  0
 28 35  1  6  0  0  0
 35 36  1  0  0  0  0
 23 37  1  6  0  0  0
 15 38  1  6  0  0  0
 38 39  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
 12 42  1  6  0  0  0
  5 43  1  6  0  0  0
  2 44  1  6  0  0  0
 45 44  1  1  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 45 50  1  0  0  0  0
 50 51  1  1  0  0  0
 52 51  1  1  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 52 57  1  0  0  0  0
 56 58  1  6  0  0  0
 55 59  1  1  0  0  0
 54 60  1  6  0  0  0
 53 61  1  6  0  0  0
 49 62  1  6  0  0  0
 48 63  1  6  0  0  0
 47 64  1  6  0  0  0
 64 65  1  0  0  0  0
 66 65  1  1  0  0  0
 66 67  1  0  0  0  0
 67 68  1  0  0  0  0
 68 69  1  0  0  0  0
 69 70  1  0  0  0  0
 70 71  1  0  0  0  0
 66 71  1  0  0  0  0
 70 72  1  6  0  0  0
 69 73  1  1  0  0  0
 68 74  1  6  0  0  0
 67 75  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0071720

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H](CCC(=O)O[C@H]1C[C@H]2[C@@H]3CC[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]2(C)[C@H]1OC(C)=O)O[C@H]1O[C@H](CO[C@@H]2O[C@@H](C)[C@H](O)[C@@H](O)[C@H]2O)[C@H](O)[C@H](O)[C@H]1O[C@@H]1O[C@@H](C)[C@H](O)[C@@H](O)[C@H]1O)CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C51H84O24/c1-20(18-66-47-42(64)39(61)35(57)30(17-52)73-47)7-10-32(54)72-29-16-28-26-9-8-24-15-25(11-13-50(24,5)27(26)12-14-51(28,6)45(29)70-23(4)53)71-49-44(75-48-43(65)38(60)34(56)22(3)69-48)40(62)36(58)31(74-49)19-67-46-41(63)37(59)33(55)21(2)68-46/h20-22,24-31,33-49,52,55-65H,7-19H2,1-6H3/t20-,21-,22-,24-,25-,26+,27-,28-,29-,30+,31+,33-,34-,35-,36-,37+,38+,39-,40-,41+,42+,43+,44+,45-,46+,47+,48-,49-,50-,51-/m0/s1

> <INCHI_KEY>
ZVTVUCKSSQCBMP-JHNDGZJMSA-N

> <FORMULA>
C51H84O24

> <MOLECULAR_WEIGHT>
1081.209

> <EXACT_MASS>
1080.535253585

> <JCHEM_ACCEPTOR_COUNT>
22

> <JCHEM_ATOM_COUNT>
159

> <JCHEM_AVERAGE_POLARIZABILITY>
113.96272918555289

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
12

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,5S,7S,10R,11S,13S,14R,15S)-14-(acetyloxy)-5-{[(2S,3R,4S,5R,6R)-4,5-dihydroxy-3-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}-6-({[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-13-yl (4S)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoate

> <ALOGPS_LOGP>
-0.87

> <JCHEM_LOGP>
-1.460451218

> <ALOGPS_LOGS>
-3.05

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
8

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.186059600288171

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.752572753958107

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6489650156700737

> <JCHEM_POLAR_SURFACE_AREA>
369.20000000000005

> <JCHEM_REFRACTIVITY>
251.09070000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
18

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.68e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,5S,7S,10R,11S,13S,14R,15S)-14-(acetyloxy)-5-{[(2S,3R,4S,5R,6R)-4,5-dihydroxy-3-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}-6-({[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-13-yl (4S)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       7.929   4.020   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.452   2.572   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.459   1.394   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.943   1.666   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.420   3.114   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.413   4.291   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.904   3.385   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.911   2.208   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.434   0.759   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.950   0.488   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.395   2.479   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.872   3.927   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.865   5.104   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.381   4.833   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.667   3.877   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.095   2.398   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.179   1.534   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -2.544   1.875   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -3.721   2.867   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -3.450   4.383   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -5.169   2.344   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -6.347   3.337   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -7.795   2.814   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -8.972   3.806   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0     -10.421   3.283   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0     -11.598   4.276   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0     -13.046   3.753   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0     -14.224   4.745   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -13.953   6.261   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0     -12.504   6.784   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -11.327   5.792   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -9.879   6.315   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0     -12.233   8.300   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0     -15.130   7.254   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0     -15.672   4.222   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0     -16.849   5.215   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -8.066   1.298   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      -1.612   5.093   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -1.032   6.519   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -1.977   7.735   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0       0.494   6.730   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       0.200   5.313   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       4.897   4.562   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0       9.968   2.301   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      10.961   3.478   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      10.437   4.926   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      11.430   6.104   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      12.946   5.833   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      13.469   4.384   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      12.477   3.207   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      13.000   1.759   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      12.007   0.581   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      12.530  -0.867   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      11.538  -2.044   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      10.022  -1.773   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       9.498  -0.325   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0      10.491   0.852   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0       7.982  -0.054   0.000  0.00  0.00           C+0
HETATM   59  O   UNK     0       9.029  -2.951   0.000  0.00  0.00           O+0
HETATM   60  O   UNK     0      12.061  -3.493   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0      14.046  -1.138   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0      14.985   4.113   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0      13.939   7.010   0.000  0.00  0.00           O+0
HETATM   64  C   UNK     0      10.907   7.552   0.000  0.00  0.00           C+0
HETATM   65  O   UNK     0       9.391   7.823   0.000  0.00  0.00           O+0
HETATM   66  C   UNK     0       8.868   9.272   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0       7.352   9.543   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0       6.828  10.991   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0       7.821  12.168   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0       9.337  11.897   0.000  0.00  0.00           C+0
HETATM   71  O   UNK     0       9.860  10.449   0.000  0.00  0.00           O+0
HETATM   72  C   UNK     0      10.330  13.075   0.000  0.00  0.00           C+0
HETATM   73  O   UNK     0       7.298  13.617   0.000  0.00  0.00           O+0
HETATM   74  O   UNK     0       5.313  11.262   0.000  0.00  0.00           O+0
HETATM   75  O   UNK     0       6.359   8.365   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   44                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   10                                                  
CONECT    5    4    6    7   43                                             
CONECT    6    5    1                                                       
CONECT    7    5    8   14                                                  
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9    4                                                       
CONECT   11    8   12   17                                                  
CONECT   12   11   13   15   42                                             
CONECT   13   12   14                                                       
CONECT   14   13    7                                                       
CONECT   15   12   16   38                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   11                                                       
CONECT   18   16   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   37                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   35                                                  
CONECT   29   28   30   34                                                  
CONECT   30   29   31   33                                                  
CONECT   31   30   26   32                                                  
CONECT   32   31                                                            
CONECT   33   30                                                            
CONECT   34   29                                                            
CONECT   35   28   36                                                       
CONECT   36   35                                                            
CONECT   37   23                                                            
CONECT   38   15   39                                                       
CONECT   39   38   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39                                                            
CONECT   42   12                                                            
CONECT   43    5                                                            
CONECT   44    2   45                                                       
CONECT   45   44   46   50                                                  
CONECT   46   45   47                                                       
CONECT   47   46   48   64                                                  
CONECT   48   47   49   63                                                  
CONECT   49   48   50   62                                                  
CONECT   50   49   45   51                                                  
CONECT   51   50   52                                                       
CONECT   52   51   53   57                                                  
CONECT   53   52   54   61                                                  
CONECT   54   53   55   60                                                  
CONECT   55   54   56   59                                                  
CONECT   56   55   57   58                                                  
CONECT   57   56   52                                                       
CONECT   58   56                                                            
CONECT   59   55                                                            
CONECT   60   54                                                            
CONECT   61   53                                                            
CONECT   62   49                                                            
CONECT   63   48                                                            
CONECT   64   47   65                                                       
CONECT   65   64   66                                                       
CONECT   66   65   67   71                                                  
CONECT   67   66   68   75                                                  
CONECT   68   67   69   74                                                  
CONECT   69   68   70   73                                                  
CONECT   70   69   71   72                                                  
CONECT   71   70   66                                                       
CONECT   72   70                                                            
CONECT   73   69                                                            
CONECT   74   68                                                            
CONECT   75   67                                                            
MASTER        0    0    0    0    0    0    0    0   75    0  164    0
END

View in JSmol

Synonyms

Value	Source
(1S,2S,5S,7S,10R,11S,13S,14R,15S)-14-(Acetyloxy)-5-{[(2S,3R,4S,5R,6R)-4,5-dihydroxy-3-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}-6-({[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-2,15-dimethyltetracyclo[8.7.0.0,.0,]heptadecan-13-yl (4S)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoic acid	Generator

Chemical Formula

C₅₁H₈₄O₂₄

Average Mass

1081.2090 Da

Monoisotopic Mass

1080.53525 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@@H](CCC(=O)O[C@H]1C[C@H]2[C@@H]3CC[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]2(C)[C@H]1OC(C)=O)O[C@H]1O[C@H](CO[C@@H]2O[C@@H](C)[C@H](O)[C@@H](O)[C@H]2O)[C@H](O)[C@H](O)[C@H]1O[C@@H]1O[C@@H](C)[C@H](O)[C@@H](O)[C@H]1O)CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C51H84O24/c1-20(18-66-47-42(64)39(61)35(57)30(17-52)73-47)7-10-32(54)72-29-16-28-26-9-8-24-15-25(11-13-50(24,5)27(26)12-14-51(28,6)45(29)70-23(4)53)71-49-44(75-48-43(65)38(60)34(56)22(3)69-48)40(62)36(58)31(74-49)19-67-46-41(63)37(59)33(55)21(2)68-46/h20-22,24-31,33-49,52,55-65H,7-19H2,1-6H3/t20-,21-,22-,24-,25-,26+,27-,28-,29-,30+,31+,33-,34-,35-,36-,37+,38+,39-,40-,41+,42+,43+,44+,45-,46+,47+,48-,49-,50-,51-/m0/s1

InChI Key

ZVTVUCKSSQCBMP-JHNDGZJMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Smilax riparia	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal glycosides

Alternative Parents

Substituents

Steroidal glycoside
Oligosaccharide
Steroid ester
Androstane-skeleton
Fatty acyl glycoside
Alkyl glycoside
O-glycosyl compound
Glycosyl compound
Fatty acyl
Oxane
Dicarboxylic acid or derivatives
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.87	ALOGPS
logP	-1.5	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	11.75	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	22	ChemAxon
Hydrogen Donor Count	12	ChemAxon
Polar Surface Area	369.2 Å²	ChemAxon
Rotatable Bond Count	18	ChemAxon
Refractivity	251.09 m³·mol⁻¹	ChemAxon
Polarizability	113.96 Å³	ChemAxon
Number of Rings	8	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162821217

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Riparoside B (NP0071720)

MOL for NP0071720 (Riparoside B)

3D MOL for NP0071720 (Riparoside B)

3D SDF for NP0071720 (Riparoside B)

3D-SDF for NP0071720 (Riparoside B)

PDB for NP0071720 (Riparoside B)

3D PDB for NP0071720 (Riparoside B)

SMILES for NP0071720 (Riparoside B)

INCHI for NP0071720 (Riparoside B)

Structure for NP0071720 (Riparoside B)

3D Structure for NP0071720 (Riparoside B)