NP-MRD: Showing NP-Card for Oxocularicine (NP0070266)

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Record Information

Version

2.0

Created at

2022-04-28 15:34:03 UTC

Updated at

2022-04-28 15:34:03 UTC

NP-MRD ID

NP0070266

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Oxocularicine

Description

20-Hydroxy-2,6,8-trioxa-14-azapentacyclo[11.7.1.0³,¹¹.0⁵,⁹.0¹⁷,²¹]Henicosa-1(20),3,5(9),10,13,15,17(21),18-octaen-12-one belongs to the class of organic compounds known as dibenzoxepines. Dibenzoxepines are compounds containing a dibenzoxepine moiety, which consists of two benzene connected by an oxazepine ring. Oxocularicine is found in Corydalis claviculata. 20-Hydroxy-2,6,8-trioxa-14-azapentacyclo[11.7.1.0³,¹¹.0⁵,⁹.0¹⁷,²¹]Henicosa-1(20),3,5(9),10,13,15,17(21),18-octaen-12-one is a strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 36  0  0  0  0  0  0  0  0999 V2000
    0.8806    2.8927   -0.2191 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3821    1.7398   -0.1206 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3084    0.6154   -0.2616 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6141    0.9866   -0.0273 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6313    0.0528   -0.1145 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3307   -1.2408   -0.4349 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0069   -1.6022   -0.6692 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9817   -0.6952   -0.5888 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2846   -1.1872   -0.8454 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5509   -0.6955   -0.4709 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4414   -1.7387   -0.6092 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0645   -3.0066   -1.0451 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7751   -1.5249   -0.3027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1478   -0.2708    0.1284 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2518    0.7831    0.2688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7210    2.0157    0.7109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8374    3.0634    0.8513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5429    2.8679    0.5572 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0750    1.6686    0.1250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9158    0.5780   -0.0356 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5129   -1.9554   -0.4545 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6200   -1.0573   -0.3693 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0253    0.1434    0.0682 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8133    2.0181    0.2234 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7857   -2.6285   -0.9214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0829   -3.1411   -1.2641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4710   -2.3452   -0.4122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2092   -0.1253    0.3652 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7738    2.1223    0.9348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2284    4.0176    1.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4092   -1.4206    0.2968 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0711   -0.9303   -1.3897 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 11  1  0
 11 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 10  2  0
 10  9  1  0
  9  8  1  0
  8  7  2  0
  7  6  1  0
  6  5  2  0
  5 23  1  0
 23 22  1  0
 22 21  1  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  2  0
 10 11  1  0
  3  8  1  0
 20 15  1  0
 21  6  1  0
  2 19  1  0
 12 26  1  0
 13 27  1  0
 14 28  1  0
 16 29  1  0
 17 30  1  0
  7 25  1  0
 22 31  1  0
 22 32  1  0
  4 24  1  0
M  END


  Mrv1533004171514012D          

 23 27  0  0  0  0            999 V2000
    2.2055   -2.1497    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6110   -1.5776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8083   -1.7682    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2419   -1.1684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4782   -0.3779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0882    0.2219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1481    1.0123    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9507    1.2029    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5171    0.6031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2825    0.9112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3369    1.7344    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0005    0.5050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6410    1.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4116    0.7303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1462    1.1058    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7303    0.5232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3567   -0.2124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5417   -0.0844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9012   -0.6044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1306   -0.3097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5748   -0.9193    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7516   -0.8649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2809   -0.1873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 14 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 12 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  2 22  1  0  0  0  0
 22 23  2  0  0  0  0
  5 23  1  0  0  0  0
  9 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0070266

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC=C2C=CN=C3C2=C1OC1=CC2=C(OCO2)C=C1C3=O

> <INCHI_IDENTIFIER>
InChI=1S/C17H9NO5/c19-10-2-1-8-3-4-18-15-14(8)17(10)23-11-6-13-12(21-7-22-13)5-9(11)16(15)20/h1-6,19H,7H2

> <INCHI_KEY>
NVOOQZOYOMXCTR-UHFFFAOYSA-N

> <FORMULA>
C17H9NO5

> <MOLECULAR_WEIGHT>
307.261

> <EXACT_MASS>
307.048072394

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
30.154278204146557

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
20-hydroxy-2,6,8-trioxa-14-azapentacyclo[11.7.1.0³,¹¹.0⁵,⁹.0¹⁷,²¹]henicosa-1(21),3,5(9),10,13,15,17,19-octaen-12-one

> <ALOGPS_LOGP>
2.41

> <JCHEM_LOGP>
2.4369630216666667

> <ALOGPS_LOGS>
-3.34

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.3468346972168534

> <JCHEM_PKA_STRONGEST_BASIC>
3.3009221455517372

> <JCHEM_POLAR_SURFACE_AREA>
77.88000000000001

> <JCHEM_REFRACTIVITY>
78.48539999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.39e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
20-hydroxy-2,6,8-trioxa-14-azapentacyclo[11.7.1.0³,¹¹.0⁵,⁹.0¹⁷,²¹]henicosa-1(21),3,5(9),10,13,15,17,19-octaen-12-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  O   UNK     0       4.117  -4.013   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       3.007  -2.945   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.509  -3.301   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.452  -2.181   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.893  -0.705   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.165   0.414   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.276   1.890   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       1.775   2.245   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       2.832   1.126   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.261   1.701   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       4.362   3.238   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.601   0.943   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.797   1.913   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.235   1.363   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       9.606   2.064   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      10.697   0.977   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       9.999  -0.396   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       8.478  -0.157   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.282  -1.128   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.844  -0.578   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       4.806  -1.716   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       3.270  -1.614   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.391  -0.350   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   22                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   23                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   23                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   20                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   18                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   14   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   12   21                                                  
CONECT   21   20   22                                                       
CONECT   22   21    2   23                                                  
CONECT   23   22    5    9                                                  
MASTER        0    0    0    0    0    0    0    0   23    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₉NO₅

Average Mass

307.2610 Da

Monoisotopic Mass

307.04807 Da

IUPAC Name

20-hydroxy-2,6,8-trioxa-14-azapentacyclo[11.7.1.0³,¹¹.0⁵,⁹.0¹⁷,²¹]henicosa-1(21),3,5(9),10,13,15,17,19-octaen-12-one

Traditional Name

20-hydroxy-2,6,8-trioxa-14-azapentacyclo[11.7.1.0³,¹¹.0⁵,⁹.0¹⁷,²¹]henicosa-1(21),3,5(9),10,13,15,17,19-octaen-12-one

CAS Registry Number

Not Available

SMILES

OC1=CC=C2C=CN=C3C2=C1OC1=CC2=C(OCO2)C=C1C3=O

InChI Identifier

InChI=1S/C17H9NO5/c19-10-2-1-8-3-4-18-15-14(8)17(10)23-11-6-13-12(21-7-22-13)5-9(11)16(15)20/h1-6,19H,7H2

InChI Key

NVOOQZOYOMXCTR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Corydalis claviculata	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dibenzoxepines. Dibenzoxepines are compounds containing a dibenzoxepine moiety, which consists of two benzene connected by an oxazepine ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzoxepines

Sub Class

Dibenzoxepines

Direct Parent

Dibenzoxepines

Alternative Parents

Substituents

Dibenzoxepine
Isoquinoline
Benzodioxole
1-hydroxy-2-unsubstituted benzenoid
Pyridine
Benzenoid
Heteroaromatic compound
Acetal
Azacycle
Oxacycle
Organic oxide
Organooxygen compound
Organonitrogen compound
Organopnictogen compound
Organic oxygen compound
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.41	ALOGPS
logP	2.44	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	7.35	ChemAxon
pKa (Strongest Basic)	3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	77.88 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	78.49 m³·mol⁻¹	ChemAxon
Polarizability	30.15 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14753580

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Oxocularicine (NP0070266)

MOL for NP0070266 (Oxocularicine)

3D MOL for NP0070266 (Oxocularicine)

3D SDF for NP0070266 (Oxocularicine)

3D-SDF for NP0070266 (Oxocularicine)

PDB for NP0070266 (Oxocularicine)

3D PDB for NP0070266 (Oxocularicine)

SMILES for NP0070266 (Oxocularicine)

INCHI for NP0070266 (Oxocularicine)

Structure for NP0070266 (Oxocularicine)

3D Structure for NP0070266 (Oxocularicine)