NP-MRD: Showing NP-Card for Micropeptin 478-B (NP0070116)

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Record Information

Version

2.0

Created at

2022-04-28 15:23:15 UTC

Updated at

2022-04-28 15:23:16 UTC

NP-MRD ID

NP0070116

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Micropeptin 478-B

Description

(2S)-N-[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]Docosa-6,13,16-trien-12-yl]-2,3-bis(sulfooxy)propanimidic acid belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. Micropeptin 478-B is found in Microcystis aeruginosa. Based on a literature review very few articles have been published on (2S)-N-[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]Docosa-6,13,16-trien-12-yl]-2,3-bis(sulfooxy)propanimidic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282217232D          

 70 72  0  0  1  0            999 V2000
   -2.0062    4.4380    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1857    4.3518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8501    3.5981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3351    2.9307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9995    2.1770    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4980    1.4243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2993    1.6204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4117    0.6038    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1654    0.2682    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7174    0.8813    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5707    1.6932    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6103    1.0146    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9459    1.7683    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7664    1.8545    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1019    2.6082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6170    3.2756    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4676    4.6968    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.6972    0.1913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0172    0.6038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7317    0.1913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.1606    0.1913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8751    0.6038    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1606   -0.6337    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8346    5.2450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
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  4 27  1  0  0  0  0
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 13 47  1  1  0  0  0
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  8 63  1  1  0  0  0
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  1 70  1  1  0  0  0
M  END

     RDKit          3D

132134  0  0  0  0  0  0  0  0999 V2000
    5.2394    7.6270   -0.9548 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9456    7.6030    0.0319 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0961    6.5237    0.7089 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7130    6.4255    2.0730 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.6625    5.3688    0.1032 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7775    4.3987   -0.4750 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9425    3.6654    0.5570 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0801    2.6940   -0.1766 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1860    1.8746    0.7436 C   0  0  1  0  0  0  0  0  0  0  0  0
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    3.6564   -0.0913    1.4178 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282217232D          

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M  END
> <DATABASE_ID>
NP0070116

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H](C)[C@H]1NC(=O)[C@@H](CC2=CC=C(O)C(Cl)=C2)N(C)C(=O)[C@H]([C@H](C)CC)N2[C@@H](O)CC[C@H](NC(=O)[C@@H](CCCNC(N)=N)NC(=O)[C@@H](NC(=O)[C@H](COS(O)(=O)=O)OS(O)(=O)=O)[C@H](C)OC1=O)C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C40H62ClN9O18S2/c1-7-19(3)30-39(59)67-21(5)31(48-35(55)28(68-70(63,64)65)18-66-69(60,61)62)36(56)45-24(10-9-15-44-40(42)43)33(53)46-25-12-14-29(52)50(37(25)57)32(20(4)8-2)38(58)49(6)26(34(54)47-30)17-22-11-13-27(51)23(41)16-22/h11,13,16,19-21,24-26,28-32,51-52H,7-10,12,14-15,17-18H2,1-6H3,(H,45,56)(H,46,53)(H,47,54)(H,48,55)(H4,42,43,44)(H,60,61,62)(H,63,64,65)/t19-,20-,21+,24-,25+,26-,28+,29+,30-,31+,32+/m1/s1

> <INCHI_KEY>
SBCCONGDAHGETE-LOFUZQJMSA-N

> <FORMULA>
C40H62ClN9O18S2

> <MOLECULAR_WEIGHT>
1056.55

> <EXACT_MASS>
1055.3342762

> <JCHEM_ACCEPTOR_COUNT>
18

> <JCHEM_ATOM_COUNT>
132

> <JCHEM_AVERAGE_POLARIZABILITY>
100.6056343520565

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
11

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(1S)-1-{[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosan-12-yl]carbamoyl}-2-(sulfooxy)ethoxy]sulfonic acid

> <ALOGPS_LOGP>
-0.75

> <JCHEM_LOGP>
-2.931893457308411

> <ALOGPS_LOGS>
-3.68

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
-1.860364840053859

> <JCHEM_PKA_STRONGEST_ACIDIC>
-2.4699470106308494

> <JCHEM_PKA_STRONGEST_BASIC>
12.40505910920278

> <JCHEM_POLAR_SURFACE_AREA>
412.88

> <JCHEM_REFRACTIVITY>
252.37160000000011

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.21e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S)-1-{[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosan-12-yl]carbamoyl}-2-(sulfooxy)ethoxysulfonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -3.745   8.284   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.213   8.123   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.587   6.716   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.492   5.471   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0      -1.866   4.064   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0      -2.796   2.659   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -4.292   3.025   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -2.635   1.127   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      -4.042   0.501   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      -5.072   1.645   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -4.799   3.161   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -6.739   1.894   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -7.366   3.301   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -8.897   3.462   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -9.524   4.869   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -8.618   6.115   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0     -11.055   5.030   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0     -11.681   6.437   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0     -10.776   7.682   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0     -12.110   8.452   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -9.245   7.521   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0      -8.340   8.767   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0      -6.808   8.606   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -6.808  10.146   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -6.182   7.199   0.000  0.00  0.00           C+0
HETATM   26  N   UNK     0      -4.650   7.038   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0      -4.024   5.632   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -4.929   4.386   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -5.276   8.445   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -4.246   9.590   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -5.903   9.852   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -4.998  11.098   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -8.966  10.174   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -9.871   8.928   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -11.403   9.089   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -12.029  10.496   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -13.561  10.657   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -14.466   9.411   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -13.839   8.004   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -12.308   7.843   0.000  0.00  0.00           C+0
HETATM   41 Cl   UNK     0     -14.745   6.758   0.000  0.00  0.00          Cl+0
HETATM   42  O   UNK     0     -15.997   9.572   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0     -11.960   3.784   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -13.492   3.945   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0     -14.397   2.699   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0     -11.334   2.377   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      -6.460   4.547   0.000  0.00  0.00           C+0
HETATM   48  N   UNK     0      -7.671   0.668   0.000  0.00  0.00           N+0
HETATM   49  C   UNK     0      -7.076  -0.752   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      -5.548  -0.946   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      -8.008  -1.978   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      -7.412  -3.398   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      -8.344  -4.624   0.000  0.00  0.00           O+0
HETATM   54  S   UNK     0      -9.872  -4.430   0.000  0.00  0.00           S+0
HETATM   55  O   UNK     0      -9.678  -2.902   0.000  0.00  0.00           O+0
HETATM   56  O   UNK     0     -10.066  -5.958   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0     -11.399  -4.236   0.000  0.00  0.00           O+0
HETATM   58  O   UNK     0      -9.535  -1.784   0.000  0.00  0.00           O+0
HETATM   59  S   UNK     0     -10.131  -0.364   0.000  0.00  0.00           S+0
HETATM   60  O   UNK     0      -8.711   0.232   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0     -11.551  -0.959   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0     -10.727   1.056   0.000  0.00  0.00           O+0
HETATM   63  C   UNK     0      -1.302   0.357   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0       0.032   1.127   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0       1.366   0.357   0.000  0.00  0.00           C+0
HETATM   66  N   UNK     0       2.700   1.127   0.000  0.00  0.00           N+0
HETATM   67  C   UNK     0       4.033   0.357   0.000  0.00  0.00           C+0
HETATM   68  N   UNK     0       5.367   1.127   0.000  0.00  0.00           N+0
HETATM   69  N   UNK     0       4.033  -1.183   0.000  0.00  0.00           N+0
HETATM   70  O   UNK     0      -3.425   9.791   0.000  0.00  0.00           O+0
CONECT    1    2   26   70                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   27                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   63                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   48                                                  
CONECT   13   12   14   47                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   43                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   34                                                  
CONECT   22   21   23   33                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   29                                                  
CONECT   26   25    1   27                                                  
CONECT   27   26    4   28                                                  
CONECT   28   27                                                            
CONECT   29   25   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31                                                            
CONECT   33   22                                                            
CONECT   34   21   35                                                       
CONECT   35   34   36   40                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39   42                                                  
CONECT   39   38   40   41                                                  
CONECT   40   39   35                                                       
CONECT   41   39                                                            
CONECT   42   38                                                            
CONECT   43   17   44   46                                                  
CONECT   44   43   45                                                       
CONECT   45   44                                                            
CONECT   46   43                                                            
CONECT   47   13                                                            
CONECT   48   12   49                                                       
CONECT   49   48   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49   52   58                                                  
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55   56   57                                             
CONECT   55   54                                                            
CONECT   56   54                                                            
CONECT   57   54                                                            
CONECT   58   51   59                                                       
CONECT   59   58   60   61   62                                             
CONECT   60   59                                                            
CONECT   61   59                                                            
CONECT   62   59                                                            
CONECT   63    8   64                                                       
CONECT   64   63   65                                                       
CONECT   65   64   66                                                       
CONECT   66   65   67                                                       
CONECT   67   66   68   69                                                  
CONECT   68   67                                                            
CONECT   69   67                                                            
CONECT   70    1                                                            
MASTER        0    0    0    0    0    0    0    0   70    0  144    0
END

View in JSmol

Synonyms

Value	Source
(2S)-N-[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-Bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2,3-bis(sulfooxy)propanimidate	Generator
(2S)-N-[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-Bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2,3-bis(sulphooxy)propanimidate	Generator
(2S)-N-[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-Bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2,3-bis(sulphooxy)propanimidic acid	Generator

Chemical Formula

C₄₀H₆₂ClN₉O₁₈S₂

Average Mass

1056.5500 Da

Monoisotopic Mass

1055.33428 Da

IUPAC Name

[(1S)-1-{[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosan-12-yl]carbamoyl}-2-(sulfooxy)ethoxy]sulfonic acid

Traditional Name

(1S)-1-{[(2S,5R,8R,11S,12S,15R,18S,21S)-2,8-bis[(2R)-butan-2-yl]-15-(3-carbamimidamidopropyl)-5-[(3-chloro-4-hydroxyphenyl)methyl]-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosan-12-yl]carbamoyl}-2-(sulfooxy)ethoxysulfonic acid

CAS Registry Number

Not Available

SMILES

CC[C@@H](C)[C@H]1NC(=O)[C@@H](CC2=CC=C(O)C(Cl)=C2)N(C)C(=O)[C@H]([C@H](C)CC)N2[C@@H](O)CC[C@H](NC(=O)[C@@H](CCCNC(N)=N)NC(=O)[C@@H](NC(=O)[C@H](COS(O)(=O)=O)OS(O)(=O)=O)[C@H](C)OC1=O)C2=O

InChI Identifier

InChI=1S/C40H62ClN9O18S2/c1-7-19(3)30-39(59)67-21(5)31(48-35(55)28(68-70(63,64)65)18-66-69(60,61)62)36(56)45-24(10-9-15-44-40(42)43)33(53)46-25-12-14-29(52)50(37(25)57)32(20(4)8-2)38(58)49(6)26(34(54)47-30)17-22-11-13-27(51)23(41)16-22/h11,13,16,19-21,24-26,28-32,51-52H,7-10,12,14-15,17-18H2,1-6H3,(H,45,56)(H,46,53)(H,47,54)(H,48,55)(H4,42,43,44)(H,60,61,62)(H,63,64,65)/t19-,20-,21+,24-,25+,26-,28+,29+,30-,31+,32+/m1/s1

InChI Key

SBCCONGDAHGETE-LOFUZQJMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Microcystis aeruginosa	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Depsipeptides

Direct Parent

Cyclic depsipeptides

Alternative Parents

Substituents

Cyclic depsipeptide
Macrolactam
Alpha-amino acid ester
Alpha-amino acid or derivatives
2-chlorophenol
2-halophenol
1-hydroxy-2-unsubstituted benzenoid
Piperidinone
Phenol
Halobenzene
Delta-lactam
Chlorobenzene
Benzenoid
Sulfuric acid ester
Alkyl sulfate
Sulfate-ester
Sulfuric acid monoester
Piperidine
Monocyclic benzene moiety
Aryl halide
Aryl chloride
Cyclic carboximidic acid
Tertiary carboxylic acid amide
Organic sulfuric acid or derivatives
Lactone
Lactam
Guanidine
Carboxylic acid ester
Carboxamide group
Oxacycle
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboximidamide
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Carboximidic acid derivative
Carboximidic acid
Alkanolamine
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Organochloride
Organohalogen compound
Imine
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.75	ALOGPS
logP	-2.9	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	-2.5	ChemAxon
pKa (Strongest Basic)	12.41	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	18	ChemAxon
Hydrogen Donor Count	11	ChemAxon
Polar Surface Area	412.88 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	252.37 m³·mol⁻¹	ChemAxon
Polarizability	100.61 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162914517

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Micropeptin 478-B (NP0070116)

MOL for NP0070116 (Micropeptin 478-B)

3D MOL for NP0070116 (Micropeptin 478-B)

3D SDF for NP0070116 (Micropeptin 478-B)

3D-SDF for NP0070116 (Micropeptin 478-B)

PDB for NP0070116 (Micropeptin 478-B)

3D PDB for NP0070116 (Micropeptin 478-B)

SMILES for NP0070116 (Micropeptin 478-B)

INCHI for NP0070116 (Micropeptin 478-B)

Structure for NP0070116 (Micropeptin 478-B)

3D Structure for NP0070116 (Micropeptin 478-B)