NP-MRD: Showing NP-Card for Gigactonine (NP0069907)

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Record Information

Version

2.0

Created at

2022-04-28 15:12:47 UTC

Updated at

2022-04-28 15:12:47 UTC

NP-MRD ID

NP0069907

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gigactonine

Description

(1R,2R,3R,4S,5R,6R,8R,9R,10R,13R,16R,17S,18S)-11-ethyl-13-(hydroxymethyl)-4,6,18-trimethoxy-11-azahexacyclo[7.7.2.1²,⁵.0¹,¹⁰.0³,⁸.0¹³,¹⁷]Nonadecane-8,9,16-triol belongs to the class of organic compounds known as aconitane-type diterpenoid alkaloids. These are alkaloid diterpenoids with a structure based on the hexacyclic aconitane skeleton. These compounds have no oxygen functionality at the C7 atom. Gigactonine is found in Aconitum gigas, Aconitum lycoctonum, Aconitum nasutum, Aconitum orientale, Consolida ajacis, Consolida armeniaca, Consolida oliveriana, Consolida oliveriana DC Schrod, Consolida orientalis and Consolida regalis. Based on a literature review very few articles have been published on (1R,2R,3R,4S,5R,6R,8R,9R,10R,13R,16R,17S,18S)-11-ethyl-13-(hydroxymethyl)-4,6,18-trimethoxy-11-azahexacyclo[7.7.2.1²,⁵.0¹,¹⁰.0³,⁸.0¹³,¹⁷]Nonadecane-8,9,16-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282217122D          

 32 37  0  0  1  0            999 V2000
   -0.0658   -0.0809    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6604   -0.7680    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4233   -1.2323    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0833   -1.1729    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7818   -0.1701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3551   -0.0202    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3237   -0.3602    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5521    0.1070    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4480    0.0824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9370   -1.5782    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  5 13  1  0  0  0  0
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  1 31  1  0  0  0  0
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M  END

     RDKit          3D

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    2.2254    1.9592   -0.7660 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282217122D          

 32 37  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0069907

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCN1C[C@@]2(CO)CC[C@@H](O)[C@]34[C@@H]5C[C@H]6[C@H](OC)[C@@H]5[C@](O)(C[C@H]6OC)[C@](O)([C@@H](OC)[C@@H]23)[C@H]14

> <INCHI_IDENTIFIER>
InChI=1S/C24H39NO7/c1-5-25-10-21(11-26)7-6-15(27)23-13-8-12-14(30-2)9-22(28,16(13)17(12)31-3)24(29,20(23)25)19(32-4)18(21)23/h12-20,26-29H,5-11H2,1-4H3/t12-,13-,14-,15-,16-,17+,18+,19+,20-,21-,22-,23-,24+/m1/s1

> <INCHI_KEY>
DKODPYKVVJKLFU-ITFRFWLPSA-N

> <FORMULA>
C24H39NO7

> <MOLECULAR_WEIGHT>
453.576

> <EXACT_MASS>
453.2726526

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
48.5722624484817

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2R,3R,4S,5R,6R,8R,9R,10R,13R,16R,17S,18S)-11-ethyl-13-(hydroxymethyl)-4,6,18-trimethoxy-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadecane-8,9,16-triol

> <ALOGPS_LOGP>
-0.44

> <JCHEM_LOGP>
-2.0781366266666677

> <ALOGPS_LOGS>
-1.62

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.876745156105269

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.205774387979915

> <JCHEM_PKA_STRONGEST_BASIC>
9.099315467399963

> <JCHEM_POLAR_SURFACE_AREA>
111.85000000000001

> <JCHEM_REFRACTIVITY>
115.56379999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.08e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,3R,4S,5R,6R,8R,9R,10R,13R,16R,17S,18S)-11-ethyl-13-(hydroxymethyl)-4,6,18-trimethoxy-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadecane-8,9,16-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  N   UNK     0      -0.123  -0.151   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      -1.233  -1.434   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.594  -2.926   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.790  -2.300   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.022  -2.189   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.459  -0.318   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.530  -0.038   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.604  -0.672   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.031   0.200   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -2.703   0.154   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.288  -0.414   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.462  -1.915   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.616  -2.946   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.100  -3.978   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.617  -2.675   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.054  -1.065   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.829  -0.025   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       8.627  -0.620   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       9.342   0.807   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.779  -3.225   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       7.040  -4.485   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       8.474  -5.304   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       4.502   1.211   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       2.475   1.601   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       2.373  -3.785   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.290  -4.934   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.199  -4.461   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       2.993  -5.356   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -2.013  -3.865   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -2.702  -5.332   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -1.172   1.456   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -2.622   2.254   0.000  0.00  0.00           C+0
CONECT    1    2    6   31                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4   27   29                                             
CONECT    4    3    5    8                                                  
CONECT    5    4    6   13   25                                             
CONECT    6    5    1    7                                                  
CONECT    7    6    8   11   24                                             
CONECT    8    7    4    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    7   12   17   23                                             
CONECT   12   11   13   20                                                  
CONECT   13   12    5   14                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   11                                                       
CONECT   18   16   19                                                       
CONECT   19   18                                                            
CONECT   20   15   12   21                                                  
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23   11                                                            
CONECT   24    7                                                            
CONECT   25    5   26   28                                                  
CONECT   26   25   27                                                       
CONECT   27   26    3                                                       
CONECT   28   25                                                            
CONECT   29    3   30                                                       
CONECT   30   29                                                            
CONECT   31    1   32                                                       
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₃₉NO₇

Average Mass

453.5760 Da

Monoisotopic Mass

453.27265 Da

IUPAC Name

(1R,2R,3R,4S,5R,6R,8R,9R,10R,13R,16R,17S,18S)-11-ethyl-13-(hydroxymethyl)-4,6,18-trimethoxy-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadecane-8,9,16-triol

Traditional Name

(1R,2R,3R,4S,5R,6R,8R,9R,10R,13R,16R,17S,18S)-11-ethyl-13-(hydroxymethyl)-4,6,18-trimethoxy-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadecane-8,9,16-triol

CAS Registry Number

Not Available

SMILES

CCN1C[C@@]2(CO)CC[C@@H](O)[C@]34[C@@H]5C[C@H]6[C@H](OC)[C@@H]5[C@](O)(C[C@H]6OC)[C@](O)([C@@H](OC)[C@@H]23)[C@H]14

InChI Identifier

InChI=1S/C24H39NO7/c1-5-25-10-21(11-26)7-6-15(27)23-13-8-12-14(30-2)9-22(28,16(13)17(12)31-3)24(29,20(23)25)19(32-4)18(21)23/h12-20,26-29H,5-11H2,1-4H3/t12-,13-,14-,15-,16-,17+,18+,19+,20-,21-,22-,23-,24+/m1/s1

InChI Key

DKODPYKVVJKLFU-ITFRFWLPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aconitum gigas	LOTUS Database	35616633
Aconitum lycoctonum	LOTUS Database	35616633
Aconitum nasutum	LOTUS Database	35616633
Aconitum orientale	LOTUS Database	35616633
Consolida ajacis	LOTUS Database	35616633
Consolida armeniaca	LOTUS Database	35616633
Consolida oliveriana	LOTUS Database	35616633
Consolida oliveriana DC Schrod	Plant	KNApSAcK
Consolida orientalis	Plant	KNApSAcK
Consolida regalis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aconitane-type diterpenoid alkaloids. These are alkaloid diterpenoids with a structure based on the hexacyclic aconitane skeleton. These compounds have no oxygen functionality at the C7 atom.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Aconitane-type diterpenoid alkaloids

Alternative Parents

Substituents

Aconitane-type diterpenoid alkaloid
Quinolidine
Alkaloid or derivatives
Azepane
Piperidine
Tertiary alcohol
Cyclic alcohol
1,3-aminoalcohol
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
1,2-aminoalcohol
Azacycle
Organoheterocyclic compound
Polyol
Ether
Dialkyl ether
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Organonitrogen compound
Amine
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.44	ALOGPS
logP	-2.1	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	9.1	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	111.85 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	115.56 m³·mol⁻¹	ChemAxon
Polarizability	48.57 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162924076

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Gigactonine (NP0069907)

MOL for NP0069907 (Gigactonine)

3D MOL for NP0069907 (Gigactonine)

3D SDF for NP0069907 (Gigactonine)

3D-SDF for NP0069907 (Gigactonine)

PDB for NP0069907 (Gigactonine)

3D PDB for NP0069907 (Gigactonine)

SMILES for NP0069907 (Gigactonine)

INCHI for NP0069907 (Gigactonine)

Structure for NP0069907 (Gigactonine)

3D Structure for NP0069907 (Gigactonine)