NP-MRD: Showing NP-Card for Funebral (NP0069895)

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Record Information

Version

2.0

Created at

2022-04-28 15:12:17 UTC

Updated at

2022-04-28 15:12:17 UTC

NP-MRD ID

NP0069895

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Funebral

Description

1-[(3S,4S,5R)-4,5-dimethyl-2-oxooxolan-3-yl]-5-(hydroxymethyl)-1H-pyrrole-2-carbaldehyde belongs to the class of organic compounds known as alpha amino acid esters. These are ester derivatives of alpha amino acids. Funebral is found in Quararibea funebris. Based on a literature review very few articles have been published on 1-[(3S,4S,5R)-4,5-dimethyl-2-oxooxolan-3-yl]-5-(hydroxymethyl)-1H-pyrrole-2-carbaldehyde.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 33  0  0  0  0  0  0  0  0999 V2000
    2.0459    1.2027   -0.3649 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2717    0.1095    0.3778 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2830   -0.4776   -0.5595 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0739   -0.0351   -0.3895 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7858   -0.2375    0.7295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3814   -0.9154    1.9726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1651   -1.0221    2.9294 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0518    0.3256    0.5323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0192    0.8501   -0.7400 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7884    0.6271   -1.3170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3741    1.0484   -2.6876 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8122    2.3295   -2.6463 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3354   -1.9223   -0.2130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6052   -2.7751   -0.2759 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6393   -2.1579    0.2002 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2386   -0.9909    0.7276 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4932   -1.0649    2.2020 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7755    0.6584   -1.0045 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5151    1.8270    0.3963 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3527    1.7495   -1.0314 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8813    0.5529    1.2845 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5990   -0.3889   -1.6375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3879   -1.3243    2.0495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8562    0.3273    1.2506 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8440    1.3739   -1.2406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2478    1.1185   -3.3695 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6852    0.3137   -3.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2425    2.8334   -1.8916 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1969   -0.8631    0.1435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3158   -2.0582    2.6420 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8394   -0.2946    2.6999 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5377   -0.7197    2.3816 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 16  1  0
 16 15  1  0
 15 13  1  0
 13 14  2  0
 13  3  1  0
  3  2  1  0
  2  1  1  0
  3  4  1  0
  4 10  1  0
 10 11  1  0
 11 12  1  0
 10  9  2  0
  9  8  1  0
  8  5  2  0
  5  6  1  0
  6  7  2  0
  2 16  1  0
  5  4  1  0
 17 30  1  0
 17 31  1  0
 17 32  1  0
 16 29  1  6
  3 22  1  6
  2 21  1  1
  1 18  1  0
  1 19  1  0
  1 20  1  0
 11 26  1  0
 11 27  1  0
 12 28  1  0
  9 25  1  0
  8 24  1  0
  6 23  1  0
M  END


  Mrv1652304282217122D          

 17 18  0  0  1  0            999 V2000
    1.2564   -1.0052    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9239   -1.4901    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6689   -2.2748    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8439   -2.2748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3590   -2.9422    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5890   -1.4901    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1538   -2.9422    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9788   -2.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2338   -3.7268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5663   -4.2117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8989   -3.7268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1143   -3.9818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9428   -4.7887    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4638   -2.2748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2843   -2.3610    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7085   -1.2352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2564   -0.1802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  1  6  1  0  0  0  0
  3  7  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  7 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  8 14  1  0  0  0  0
 14 15  2  0  0  0  0
  2 16  1  1  0  0  0
  1 17  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0069895

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1OC(=O)[C@H]([C@@H]1C)N1C(CO)=CC=C1C=O

> <INCHI_IDENTIFIER>
InChI=1S/C12H15NO4/c1-7-8(2)17-12(16)11(7)13-9(5-14)3-4-10(13)6-15/h3-5,7-8,11,15H,6H2,1-2H3/t7-,8-,11+/m1/s1

> <INCHI_KEY>
SBDVNGVBUIUJOY-XLDPMVHQSA-N

> <FORMULA>
C12H15NO4

> <MOLECULAR_WEIGHT>
237.255

> <EXACT_MASS>
237.100107967

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
23.712966920032457

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1-[(3S,4S,5R)-4,5-dimethyl-2-oxooxolan-3-yl]-5-(hydroxymethyl)-1H-pyrrole-2-carbaldehyde

> <ALOGPS_LOGP>
0.91

> <JCHEM_LOGP>
0.6821278506666673

> <ALOGPS_LOGS>
-1.97

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.61551938984572

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9669718188814818

> <JCHEM_POLAR_SURFACE_AREA>
68.53

> <JCHEM_REFRACTIVITY>
61.199

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.55e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-[(3S,4S,5R)-4,5-dimethyl-2-oxooxolan-3-yl]-5-(hydroxymethyl)pyrrole-2-carbaldehyde

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       2.345  -1.876   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.591  -2.782   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.115  -4.246   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.575  -4.246   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.670  -5.492   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       1.099  -2.782   0.000  0.00  0.00           O+0
HETATM    7  N   UNK     0       4.021  -5.492   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       5.561  -5.492   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.036  -6.957   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.791  -7.862   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.545  -6.957   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.080  -7.433   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.760  -8.939   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       6.466  -4.246   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       7.997  -4.407   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       5.056  -2.306   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.345  -0.336   0.000  0.00  0.00           C+0
CONECT    1    2    6   17                                                  
CONECT    2    1    3   16                                                  
CONECT    3    2    4    7                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    1                                                       
CONECT    7    3    8   11                                                  
CONECT    8    7    9   14                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    7   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14    8   15                                                       
CONECT   15   14                                                            
CONECT   16    2                                                            
CONECT   17    1                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₂H₁₅NO₄

Average Mass

237.2550 Da

Monoisotopic Mass

237.10011 Da

IUPAC Name

1-[(3S,4S,5R)-4,5-dimethyl-2-oxooxolan-3-yl]-5-(hydroxymethyl)-1H-pyrrole-2-carbaldehyde

Traditional Name

1-[(3S,4S,5R)-4,5-dimethyl-2-oxooxolan-3-yl]-5-(hydroxymethyl)pyrrole-2-carbaldehyde

CAS Registry Number

Not Available

SMILES

C[C@H]1OC(=O)[C@H]([C@@H]1C)N1C(CO)=CC=C1C=O

InChI Identifier

InChI=1S/C12H15NO4/c1-7-8(2)17-12(16)11(7)13-9(5-14)3-4-10(13)6-15/h3-5,7-8,11,15H,6H2,1-2H3/t7-,8-,11+/m1/s1

InChI Key

SBDVNGVBUIUJOY-XLDPMVHQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Quararibea funebris	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acid esters. These are ester derivatives of alpha amino acids.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acid esters

Alternative Parents

Substituents

Alpha-amino acid ester
Aryl-aldehyde
Gamma butyrolactone
Substituted pyrrole
Heteroaromatic compound
Oxolane
Pyrrole
Carboxylic acid ester
Lactone
Monocarboxylic acid or derivatives
Oxacycle
Azacycle
Organoheterocyclic compound
Aldehyde
Organooxygen compound
Organonitrogen compound
Alcohol
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Primary alcohol
Organic nitrogen compound
Aromatic alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.91	ALOGPS
logP	0.68	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	14.62	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	68.53 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	61.2 m³·mol⁻¹	ChemAxon
Polarizability	23.71 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9097807

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10922562

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Funebral (NP0069895)

MOL for NP0069895 (Funebral)

3D MOL for NP0069895 (Funebral)

3D SDF for NP0069895 (Funebral)

3D-SDF for NP0069895 (Funebral)

PDB for NP0069895 (Funebral)

3D PDB for NP0069895 (Funebral)

SMILES for NP0069895 (Funebral)

INCHI for NP0069895 (Funebral)

Structure for NP0069895 (Funebral)

3D Structure for NP0069895 (Funebral)