NP-MRD: Showing NP-Card for Condaline (NP0069045)

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Record Information

Version

2.0

Created at

2022-04-28 14:18:27 UTC

Updated at

2022-04-28 14:18:27 UTC

NP-MRD ID

NP0069045

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Condaline

Description

Condaline is found in Condalia buxifolia and Scutia buxifolia.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282216182D          

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M  END

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M  END


  Mrv1652304282216182D          

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    6.7116    3.6493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3567    2.9045    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7510    2.8709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9883    3.1854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8793    4.0032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5330    4.5065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2957    4.1920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4047    3.3742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
  3 18  1  0  0  0  0
 13 19  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  1  0  0  0
  9 23  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  1  0  0  0
 27 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 30 35  1  0  0  0  0
  8 36  1  1  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 36 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0069045

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H](C)[C@@H]1NC(=O)[C@@H](NC(=O)[C@@H](CC2=CC=CC=C2)NC)[C@@H](OC2=CC=C(C=C2)\C=C/NC1=O)C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C33H38N4O4/c1-4-22(2)28-32(39)35-20-19-23-15-17-26(18-16-23)41-30(25-13-9-6-10-14-25)29(33(40)36-28)37-31(38)27(34-3)21-24-11-7-5-8-12-24/h5-20,22,27-30,34H,4,21H2,1-3H3,(H,35,39)(H,36,40)(H,37,38)/b20-19-/t22-,27-,28+,29+,30+/m1/s1

> <INCHI_KEY>
JDFUVCMEHULMNF-AIZSVGJDSA-N

> <FORMULA>
C33H38N4O4

> <MOLECULAR_WEIGHT>
554.691

> <EXACT_MASS>
554.28930572

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
79

> <JCHEM_AVERAGE_POLARIZABILITY>
58.77892076348113

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-N-[(3S,4S,7S,10E)-7-[(2R)-butan-2-yl]-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),10,12,15-tetraen-4-yl]-2-(methylamino)-3-phenylpropanamide

> <ALOGPS_LOGP>
3.74

> <JCHEM_LOGP>
4.392004181333332

> <ALOGPS_LOGS>
-5.51

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
12.380386930133152

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.191075957898931

> <JCHEM_PKA_STRONGEST_BASIC>
8.342347760610526

> <JCHEM_POLAR_SURFACE_AREA>
108.56

> <JCHEM_REFRACTIVITY>
158.29029999999992

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.70e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-N-[(3S,4S,7S,10E)-7-[(2R)-butan-2-yl]-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),10,12,15-tetraen-4-yl]-2-(methylamino)-3-phenylpropanamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -0.422   1.212   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.671  -0.315   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.551  -1.312   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.949  -0.626   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.145   0.898   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.985   1.904   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       2.024   3.145   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       3.472   3.833   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.062   3.546   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.290   2.488   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.549   3.375   0.000  0.00  0.00           O+0
HETATM   12  N   UNK     0       6.865   0.998   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       6.726  -0.551   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.936  -1.889   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       7.058  -2.944   0.000  0.00  0.00           O+0
HETATM   16  N   UNK     0       4.647  -2.760   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       3.094  -2.992   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.570  -2.571   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.192  -1.023   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.333   0.011   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.799  -0.461   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.516  -2.528   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0       5.725   4.936   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       7.260   5.058   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       7.923   6.448   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       8.133   3.789   0.000  0.00  0.00           C+0
HETATM   27  N   UNK     0       7.470   2.399   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0       8.343   1.130   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       9.668   3.910   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      10.331   5.300   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       9.458   6.569   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      10.120   7.959   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      11.656   8.081   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      12.528   6.812   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      11.866   5.422   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       3.269   5.359   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       1.845   5.946   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       1.641   7.473   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       2.862   8.412   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       4.285   7.825   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       4.489   6.299   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   36                                                  
CONECT    9    8   10   23                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   19                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17    3                                                       
CONECT   19   13   20   22                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19                                                            
CONECT   23    9   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   30                                                       
CONECT   30   29   31   35                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   30                                                       
CONECT   36    8   37   41                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   36                                                       
MASTER        0    0    0    0    0    0    0    0   41    0   88    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₃₈N₄O₄

Average Mass

554.6910 Da

Monoisotopic Mass

554.28931 Da

IUPAC Name

(2R)-N-[(3S,4S,7S,10E)-7-[(2R)-butan-2-yl]-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),10,12,15-tetraen-4-yl]-2-(methylamino)-3-phenylpropanamide

Traditional Name

(2R)-N-[(3S,4S,7S,10E)-7-[(2R)-butan-2-yl]-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),10,12,15-tetraen-4-yl]-2-(methylamino)-3-phenylpropanamide

CAS Registry Number

Not Available

SMILES

CC[C@@H](C)[C@@H]1NC(=O)[C@@H](NC(=O)[C@@H](CC2=CC=CC=C2)NC)[C@@H](OC2=CC=C(C=C2)\C=C/NC1=O)C1=CC=CC=C1

InChI Identifier

InChI=1S/C33H38N4O4/c1-4-22(2)28-32(39)35-20-19-23-15-17-26(18-16-23)41-30(25-13-9-6-10-14-25)29(33(40)36-28)37-31(38)27(34-3)21-24-11-7-5-8-12-24/h5-20,22,27-30,34H,4,21H2,1-3H3,(H,35,39)(H,36,40)(H,37,38)/b20-19-/t22-,27-,28+,29+,30+/m1/s1

InChI Key

JDFUVCMEHULMNF-AIZSVGJDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Condalia buxifolia	Plant	KNApSAcK
Scutia buxifolia	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.74	ALOGPS
logP	4.39	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	11.19	ChemAxon
pKa (Strongest Basic)	8.34	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	108.56 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	158.29 m³·mol⁻¹	ChemAxon
Polarizability	58.78 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

Not Available

References

General References

Not Available

Showing NP-Card for Condaline (NP0069045)

MOL for NP0069045 (Condaline)

3D MOL for NP0069045 (Condaline)

3D SDF for NP0069045 (Condaline)

3D-SDF for NP0069045 (Condaline)

PDB for NP0069045 (Condaline)

3D PDB for NP0069045 (Condaline)

SMILES for NP0069045 (Condaline)

INCHI for NP0069045 (Condaline)

Structure for NP0069045 (Condaline)

3D Structure for NP0069045 (Condaline)