NP-MRD: Showing NP-Card for Cephalezomine M (NP0069043)

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Record Information

Version

2.0

Created at

2022-04-28 14:18:22 UTC

Updated at

2022-04-28 14:18:22 UTC

NP-MRD ID

NP0069043

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cephalezomine M

Description

Cephalezomine M belongs to the class of organic compounds known as homoerythrinane alkaloids. These are erythrina alkaloids predominantly possessing a 6-5-7-6-membered indolobenzazepine skeleton or a derivative thereof. Cephalezomine M is found in Cephalotaxus harringtonia. Based on a literature review very few articles have been published on Cephalezomine M.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 45 48  0  0  0  0  0  0  0  0999 V2000
    2.0358    2.1438    2.9249 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4639    0.8941    2.5075 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9894    0.6959    1.1935 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1372    0.5972    0.2257 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6969   -0.0833   -0.9914 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5542   -0.6679   -1.2013 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9454   -1.3882   -2.3290 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1636   -2.4810   -1.6081 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0048   -2.0380   -0.2898 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7339   -2.7097    0.6557 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8803   -2.0676    1.3446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6700   -1.0693    0.6067 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9433    0.0112   -0.0735 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8546    1.0146   -0.4396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4582    2.1498   -1.1152 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3541    3.1491   -1.4816 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1370    2.3272   -1.4518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6739    3.4368   -2.1265 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2364    1.3481   -1.0965 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6130    0.2155   -0.4247 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4700   -0.7232   -0.1225 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2009   -0.5777    1.1465 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4222    2.9641    2.2697 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3869    2.2688    3.9770 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9270    2.2457    2.9178 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4158    1.5943    0.8821 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9447    0.0397    0.7687 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5758    1.6106    0.0185 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4493   -0.0831   -1.8131 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2751   -0.7530   -2.9440 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6502   -1.8566   -3.0143 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8104   -3.3832   -1.6112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7580   -2.7599   -2.1547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1724   -3.6420    0.1628 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0487   -3.1687    1.4261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5153   -1.6322    2.3149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6153   -2.8570    1.7061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3585   -1.5299   -0.1406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3831   -0.5880    1.3439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9054    0.8800   -0.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3511    3.0454   -1.2437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2983    4.1937   -2.4143 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8173    1.4301   -1.3514 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9806   -1.4073    1.1407 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6530   -0.7892    2.0815 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  2  0
 17 18  1  0
 17 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  1
 22  3  1  0
 21  6  1  0
 21  9  1  0
 20 13  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  6
  4 27  1  0
  4 28  1  0
  5 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
  8 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
 14 40  1  0
 16 41  1  0
 18 42  1  0
 19 43  1  0
 22 44  1  0
 22 45  1  0
M  END


  Mrv1652304282216182D          

 22 25  0  0  1  0            999 V2000
    4.1716   -1.1078    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6449   -0.4321    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2676    0.4288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4745    0.3877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0012   -0.2880    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3497   -1.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2661   -0.8348    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8101   -1.4551    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.6743   -1.4326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2399   -0.7973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2434    0.0488    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3883   -2.1641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5836   -1.9820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5081   -1.1605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8471   -0.6668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9441    0.1525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7021    0.4781    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3631   -0.0155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7991    1.2974    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1380    1.7910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4667   -0.5041    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5201   -1.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  4 11  1  0  0  0  0
  8 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  7 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  7 18  1  0  0  0  0
 17 19  1  6  0  0  0
 19 20  1  0  0  0  0
  2 21  1  0  0  0  0
  1 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0069043

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@H]1CC=C2CCN3CCCC4=CC(O)=C(O)C=C4[C@]23C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H23NO3/c1-22-14-5-4-13-6-8-19-7-2-3-12-9-16(20)17(21)10-15(12)18(13,19)11-14/h4,9-10,14,20-21H,2-3,5-8,11H2,1H3/t14-,18-/m0/s1

> <INCHI_KEY>
HPADXYCEHVZBLQ-KSSFIOAISA-N

> <FORMULA>
C18H23NO3

> <MOLECULAR_WEIGHT>
301.386

> <EXACT_MASS>
301.167793605

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
33.17883068967487

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,17S)-17-methoxy-11-azatetracyclo[9.7.0.0^{1,14}.0^{2,7}]octadeca-2,4,6,14-tetraene-4,5-diol

> <ALOGPS_LOGP>
2.70

> <JCHEM_LOGP>
1.59892223572824

> <ALOGPS_LOGS>
-2.89

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
12.844573792675295

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.750985291559255

> <JCHEM_PKA_STRONGEST_BASIC>
9.042259770035756

> <JCHEM_POLAR_SURFACE_AREA>
52.93000000000001

> <JCHEM_REFRACTIVITY>
87.267

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.92e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,17S)-17-methoxy-11-azatetracyclo[9.7.0.0^{1,14}.0^{2,7}]octadeca-2,4,6,14-tetraene-4,5-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       7.787  -2.068   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.670  -0.807   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.966   0.800   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.486   0.724   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.602  -0.538   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.253  -1.933   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.230  -1.558   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       5.245  -2.716   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       6.859  -2.674   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.915  -1.488   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.921   0.091   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.458  -4.040   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.956  -3.700   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.815  -2.166   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.581  -1.245   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.762   0.285   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.177   0.892   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.411  -0.029   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       3.358   2.422   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.124   3.343   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      10.205  -0.941   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       8.438  -3.464   0.000  0.00  0.00           O+0
CONECT    1    2    6   22                                                  
CONECT    2    1    3   21                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   11                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   14   18                                             
CONECT    8    7    9   12                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    4                                                       
CONECT   12    8   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    7   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17    7                                                       
CONECT   19   17   20                                                       
CONECT   20   19                                                            
CONECT   21    2                                                            
CONECT   22    1                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   50    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₂₃NO₃

Average Mass

301.3860 Da

Monoisotopic Mass

301.16779 Da

IUPAC Name

(1S,17S)-17-methoxy-11-azatetracyclo[9.7.0.0^{1,14}.0^{2,7}]octadeca-2,4,6,14-tetraene-4,5-diol

Traditional Name

(1S,17S)-17-methoxy-11-azatetracyclo[9.7.0.0^{1,14}.0^{2,7}]octadeca-2,4,6,14-tetraene-4,5-diol

CAS Registry Number

Not Available

SMILES

CO[C@H]1CC=C2CCN3CCCC4=CC(O)=C(O)C=C4[C@]23C1

InChI Identifier

InChI=1S/C18H23NO3/c1-22-14-5-4-13-6-8-19-7-2-3-12-9-16(20)17(21)10-15(12)18(13,19)11-14/h4,9-10,14,20-21H,2-3,5-8,11H2,1H3/t14-,18-/m0/s1

InChI Key

HPADXYCEHVZBLQ-KSSFIOAISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cephalotaxus harringtonia	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as homoerythrinane alkaloids. These are erythrina alkaloids predominantly possessing a 6-5-7-6-membered indolobenzazepine skeleton or a derivative thereof.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Erythrina alkaloids

Sub Class

Homoerythrinane alkaloids

Direct Parent

Homoerythrinane alkaloids

Alternative Parents

Substituents

Homoerythrinane skeleton
Benzazepine
Indole or derivatives
Azepine
1-hydroxy-2-unsubstituted benzenoid
Aralkylamine
Phenol
Benzenoid
N-alkylpyrrolidine
Pyrrolidine
Tertiary aliphatic amine
Tertiary amine
Dialkyl ether
Ether
Azacycle
Organoheterocyclic compound
Hydrocarbon derivative
Amine
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.7	ALOGPS
logP	1.6	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	9.75	ChemAxon
pKa (Strongest Basic)	9.04	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	52.93 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	87.27 m³·mol⁻¹	ChemAxon
Polarizability	33.18 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00027201

Chemspider ID

9209134

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11033960

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Cephalezomine M (NP0069043)

MOL for NP0069043 (Cephalezomine M)

3D MOL for NP0069043 (Cephalezomine M)

3D SDF for NP0069043 (Cephalezomine M)

3D-SDF for NP0069043 (Cephalezomine M)

PDB for NP0069043 (Cephalezomine M)

3D PDB for NP0069043 (Cephalezomine M)

SMILES for NP0069043 (Cephalezomine M)

INCHI for NP0069043 (Cephalezomine M)

Structure for NP0069043 (Cephalezomine M)

3D Structure for NP0069043 (Cephalezomine M)