NP-MRD: Showing NP-Card for 6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline (NP0068737)

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Record Information

Version

2.0

Created at

2022-04-28 14:00:08 UTC

Updated at

2022-04-28 14:00:08 UTC

NP-MRD ID

NP0068737

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline

Description

6-Methoxy-2-methyl-1H,2H,3H,4H,9H-pyrido[3,4-b]indole belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety. 6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline is found in Antirhea lucida, Evodia fructus, Horsfieldia superba, Meconopsis napaulensis, Nectandra megapotamica, Phalaris aquatica, Phalaris arundinacea, Phalaris coerulescens, Phalaris tuberosa and Phyllodium pulchellum. 6-Methoxy-2-methyl-1H,2H,3H,4H,9H-pyrido[3,4-b]indole is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 34  0  0  0  0  0  0  0  0999 V2000
    4.4578    1.7231   -0.4917 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4223    0.3408   -0.2671 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2389   -0.3491   -0.0691 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2627   -1.7083    0.1474 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0964   -2.4357    0.3501 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8771   -1.8124    0.3398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3809   -2.2410    0.5013 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2088   -1.1638    0.3893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4602   -0.0137    0.1495 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8411   -0.4505    0.1238 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0024    0.2742   -0.0781 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2172    1.2508    0.0039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1554    1.2993    1.1918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0619    0.2009    1.1981 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3687    0.6959    0.7587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6760   -0.9566    0.4622 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6279    2.1076   -1.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3969    2.0330   -1.0024 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4517    2.2838    0.4761 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2246   -2.1945    0.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2134   -3.5046    0.5131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6821   -3.2316    0.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9510    1.3225   -0.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4942    2.0723    0.0270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7993    1.2218   -0.9424 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4944    1.2462    2.1043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7089    2.2589    1.2311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1648   -0.0482    0.9283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3419    0.9603   -0.3277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5626    1.6100    1.3609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1738   -1.8400    0.9501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1128   -0.9513   -0.5801 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
  9 10  1  0
 10 11  2  0
 11  3  1  0
 10  6  1  0
 16  8  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  4 20  1  0
  5 21  1  0
  7 22  1  0
 12 24  1  0
 12 25  1  0
 13 26  1  0
 13 27  1  0
 15 28  1  0
 15 29  1  0
 15 30  1  0
 16 31  1  0
 16 32  1  0
 11 23  1  0
M  END


  Mrv1533004241502272D          

 16 18  0  0  0  0            999 V2000
    0.6159   -2.2741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4229   -2.4457    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9749   -1.8326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7200   -1.0479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2720   -0.4349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0790   -0.6064    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7464   -0.1215    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4139   -0.6064    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2208   -0.4349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7729   -1.0479    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.5798   -0.8764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5179   -1.8326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7110   -2.0041    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1589   -1.3910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3339   -1.3910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7819   -2.0041    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  8 14  2  0  0  0  0
 14 15  1  0  0  0  0
  6 15  1  0  0  0  0
 15 16  2  0  0  0  0
  3 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0068737

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C2NC3=C(CCN(C)C3)C2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C13H16N2O/c1-15-6-5-10-11-7-9(16-2)3-4-12(11)14-13(10)8-15/h3-4,7,14H,5-6,8H2,1-2H3

> <INCHI_KEY>
WOIXRQJXGWXSBU-UHFFFAOYSA-N

> <FORMULA>
C13H16N2O

> <MOLECULAR_WEIGHT>
216.284

> <EXACT_MASS>
216.126263143

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
25.11992322046231

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
6-methoxy-2-methyl-1H,2H,3H,4H,9H-pyrido[3,4-b]indole

> <ALOGPS_LOGP>
1.70

> <JCHEM_LOGP>
1.815622940333333

> <ALOGPS_LOGS>
-2.22

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.724452724913377

> <JCHEM_PKA_STRONGEST_BASIC>
6.489680384513949

> <JCHEM_POLAR_SURFACE_AREA>
28.259999999999998

> <JCHEM_REFRACTIVITY>
65.33750000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.30e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-methoxy-2-methyl-1H,3H,4H,9H-pyrido[3,4-b]indole

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0       1.150  -4.245   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.656  -4.565   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.687  -3.421   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.211  -1.956   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.241  -0.812   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.747  -1.132   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       6.993  -0.227   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       8.239  -1.132   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.746  -0.812   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      10.776  -1.956   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0      12.282  -1.636   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.300  -3.421   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.794  -3.741   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.763  -2.597   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.223  -2.597   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.193  -3.741   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   16                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   15                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    8   15                                                  
CONECT   15   14    6   16                                                  
CONECT   16   15    3                                                       
MASTER        0    0    0    0    0    0    0    0   16    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₆N₂O

Average Mass

216.2840 Da

Monoisotopic Mass

216.12626 Da

IUPAC Name

6-methoxy-2-methyl-1H,2H,3H,4H,9H-pyrido[3,4-b]indole

Traditional Name

6-methoxy-2-methyl-1H,3H,4H,9H-pyrido[3,4-b]indole

CAS Registry Number

Not Available

SMILES

COC1=CC=C2NC3=C(CCN(C)C3)C2=C1

InChI Identifier

InChI=1S/C13H16N2O/c1-15-6-5-10-11-7-9(16-2)3-4-12(11)14-13(10)8-15/h3-4,7,14H,5-6,8H2,1-2H3

InChI Key

WOIXRQJXGWXSBU-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Antirhea lucida	Plant	KNApSAcK
Evodia fructus	Plant	KNApSAcK
Horsfieldia superba	Plant	KNApSAcK
Meconopsis napaulensis	LOTUS Database	35616633
Nectandra megapotamica	LOTUS Database	35616633
Phalaris aquatica	LOTUS Database	35616633
Phalaris arundinacea	LOTUS Database	35616633
Phalaris coerulescens	LOTUS Database	35616633
Phalaris tuberosa	Plant	KNApSAcK
Phyllodium pulchellum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Pyridoindoles

Direct Parent

Beta carbolines

Alternative Parents

Substituents

Beta-carboline
3-alkylindole
Indole
Anisole
Phenol ether
Alkyl aryl ether
Aralkylamine
Benzenoid
Heteroaromatic compound
Pyrrole
Tertiary amine
Tertiary aliphatic amine
Azacycle
Ether
Amine
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.7	ALOGPS
logP	1.82	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	16.72	ChemAxon
pKa (Strongest Basic)	6.49	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	28.26 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	65.34 m³·mol⁻¹	ChemAxon
Polarizability	25.12 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5319717

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline (NP0068737)

MOL for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

3D MOL for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

3D SDF for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

3D-SDF for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

PDB for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

3D PDB for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

SMILES for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

INCHI for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

Structure for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)

3D Structure for NP0068737 (6-Methoxy-2-methyl-1,2,3,4-tetrahydro-beta-carboline)