NP-MRD: Showing NP-Card for Stephaoxocanidine (NP0068176)

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Record Information

Version

2.0

Created at

2022-04-28 13:10:23 UTC

Updated at

2022-04-28 13:10:23 UTC

NP-MRD ID

NP0068176

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Stephaoxocanidine

Description

(5S)-15,16-dimethoxy-18-oxa-10-azatetracyclo[7.7.1.1²,⁸.0¹³,¹⁷]Octadeca-1(17),2,7,9,11,13,15-heptaen-5-ol belongs to the class of organic compounds known as isoquinolines and derivatives. These are aromatic polycyclic compounds containing an isoquinoline moiety, which consists of a benzene ring fused to a pyridine ring and forming benzo[c]pyridine. Stephaoxocanidine is found in Stephania cephalantha and Stephania cepharantha Hayata . Based on a literature review very few articles have been published on (5S)-15,16-dimethoxy-18-oxa-10-azatetracyclo[7.7.1.1²,⁸.0¹³,¹⁷]Octadeca-1(17),2,7,9,11,13,15-heptaen-5-ol.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304282215102D          

 23 26  0  0  1  0            999 V2000
    0.1391   -0.2183    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6576   -0.4445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8510   -1.2577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2690   -1.8784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5306   -1.6265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7512   -0.7864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5820   -0.5142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2895   -0.0113    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1378   -0.1003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6546   -0.7713    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5259   -1.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8340   -2.0892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9905   -1.9738    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1649   -2.1998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0028   -3.0186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2203   -3.2838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3996   -2.7229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0529   -4.0916    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6688   -4.6405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6231   -3.5625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4623   -4.3717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8359   -1.2182    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4536   -0.5660    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  4  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 12 11  1  4  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
  5 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
  4 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 15 20  1  0  0  0  0
 20 21  1  0  0  0  0
 13 22  1  0  0  0  0
  7 22  1  0  0  0  0
 10 23  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0068176

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=CC=NC3=C2C(C2=CC[C@H](O)CC=C3O2)=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C18H17NO4/c1-21-14-9-10-7-8-19-17-13-6-4-11(20)3-5-12(23-13)16(15(10)17)18(14)22-2/h5-9,11,20H,3-4H2,1-2H3/t11-/m0/s1

> <INCHI_KEY>
MSJZKLOQNQBVFQ-NSHDSACASA-N

> <FORMULA>
C18H17NO4

> <MOLECULAR_WEIGHT>
311.337

> <EXACT_MASS>
311.115758031

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
32.31013218755423

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5S)-15,16-dimethoxy-18-oxa-10-azatetracyclo[7.7.1.1^{2,8}.0^{13,17}]octadeca-1(16),2,7,9(17),10,12,14-heptaen-5-ol

> <ALOGPS_LOGP>
2.83

> <JCHEM_LOGP>
1.2503678463333334

> <ALOGPS_LOGS>
-3.34

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.140795631614111

> <JCHEM_PKA_STRONGEST_BASIC>
3.9426789199166095

> <JCHEM_POLAR_SURFACE_AREA>
60.81

> <JCHEM_REFRACTIVITY>
88.36810000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.41e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5S)-15,16-dimethoxy-18-oxa-10-azatetracyclo[7.7.1.1^{2,8}.0^{13,17}]octadeca-1(16),2,7,9(17),10,12,14-heptaen-5-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  N   UNK     0       0.260  -0.407   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      -1.227  -0.830   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.589  -2.348   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.502  -3.506   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.990  -3.036   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.402  -1.468   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.953  -0.960   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.274  -0.021   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.857  -0.187   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.822  -1.440   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.582  -2.994   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.290  -3.900   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.716  -3.684   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.174  -4.106   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.872  -5.635   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.411  -6.130   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.746  -5.083   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       0.099  -7.638   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.248  -8.662   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       3.030  -6.650   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       2.730  -8.160   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       3.427  -2.274   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       8.313  -1.057   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   17                                                  
CONECT    5    4    6   14                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8   22                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   23                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   22                                                  
CONECT   14   13    5   15                                                  
CONECT   15   14   16   20                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16    4                                                       
CONECT   18   16   19                                                       
CONECT   19   18                                                            
CONECT   20   15   21                                                       
CONECT   21   20                                                            
CONECT   22   13    7                                                       
CONECT   23   10                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₁₇NO₄

Average Mass

311.3370 Da

Monoisotopic Mass

311.11576 Da

IUPAC Name

(5S)-15,16-dimethoxy-18-oxa-10-azatetracyclo[7.7.1.1^{2,8}.0^{13,17}]octadeca-1(16),2,7,9(17),10,12,14-heptaen-5-ol

Traditional Name

(5S)-15,16-dimethoxy-18-oxa-10-azatetracyclo[7.7.1.1^{2,8}.0^{13,17}]octadeca-1(16),2,7,9(17),10,12,14-heptaen-5-ol

CAS Registry Number

Not Available

SMILES

COC1=CC2=CC=NC3=C2C(C2=CC[C@H](O)CC=C3O2)=C1OC

InChI Identifier

InChI=1S/C18H17NO4/c1-21-14-9-10-7-8-19-17-13-6-4-11(20)3-5-12(23-13)16(15(10)17)18(14)22-2/h5-9,11,20H,3-4H2,1-2H3/t11-/m0/s1

InChI Key

MSJZKLOQNQBVFQ-NSHDSACASA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Stephania cephalantha	LOTUS Database	35616633
Stephania cepharantha Hayata	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoquinolines and derivatives. These are aromatic polycyclic compounds containing an isoquinoline moiety, which consists of a benzene ring fused to a pyridine ring and forming benzo[c]pyridine.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Isoquinolines and derivatives

Sub Class

Not Available

Direct Parent

Isoquinolines and derivatives

Alternative Parents

Substituents

2-benzopyran
Isoquinoline
Benzopyran
Anisole
Alkyl aryl ether
Benzenoid
Pyridine
Heteroaromatic compound
Secondary alcohol
Oxacycle
Azacycle
Ether
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.83	ALOGPS
logP	1.25	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	15.14	ChemAxon
pKa (Strongest Basic)	3.94	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	60.81 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	88.37 m³·mol⁻¹	ChemAxon
Polarizability	32.31 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163078774

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Stephaoxocanidine (NP0068176)

MOL for NP0068176 (Stephaoxocanidine)

3D MOL for NP0068176 (Stephaoxocanidine)

3D SDF for NP0068176 (Stephaoxocanidine)

3D-SDF for NP0068176 (Stephaoxocanidine)

PDB for NP0068176 (Stephaoxocanidine)

3D PDB for NP0068176 (Stephaoxocanidine)

SMILES for NP0068176 (Stephaoxocanidine)

INCHI for NP0068176 (Stephaoxocanidine)

Structure for NP0068176 (Stephaoxocanidine)

3D Structure for NP0068176 (Stephaoxocanidine)