NP-MRD: Showing NP-Card for (-)-Xylostosidine (NP0067736)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-28 12:35:19 UTC

Updated at

2022-04-28 12:35:19 UTC

NP-MRD ID

NP0067736

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Xylostosidine

Description

(7S,9S,10S,11S)-10-ethenyl-11-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]Tridec-1(13)-en-2-one belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. (-)-Xylostosidine is found in Lonicera xylosterum L. and Lonicera xylosteum. Based on a literature review very few articles have been published on (7S,9S,10S,11S)-10-ethenyl-11-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]Tridec-1(13)-en-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282214352D          

 28 31  0  0  1  0            999 V2000
    3.3523    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.1104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0668    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.9246    2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6391    1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6391    1.1104    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.9246    0.6979    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2102    1.1104    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4957    0.6979    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246   -0.1271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3536    0.6979    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3536    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0681    1.9354    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -0.1271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  1  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  2  0  0  0  0
  5  9  1  6  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  1  0  0  0
 14 17  1  6  0  0  0
 13 18  1  1  0  0  0
 12 19  1  6  0  0  0
 19 20  1  0  0  0  0
  2 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 24 23  1  1  0  0  0
 24 25  1  0  0  0  0
  1 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
M  END

     RDKit          3D

 53 56  0  0  0  0  0  0  0  0999 V2000
    0.0630   -2.5711   -0.2839 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3329   -1.3406   -0.6575 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8844   -0.3046    0.2603 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0561    0.8478    0.3424 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0988    0.6771   -0.5742 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3283    0.5251    0.0184 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8427   -0.7144   -0.4171 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0409   -1.0087    0.2264 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6694   -2.1734   -0.5449 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8831   -2.5344    0.0379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0241    0.1531    0.1301 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8731    0.8986    1.3109 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5057    1.0480   -0.9960 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1957    0.2881   -2.1230 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2154    1.6616   -0.4784 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5607    2.5335    0.5488 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5344    2.1043    0.2295 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8644    2.3695    0.3877 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7307    1.3644    0.1724 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1712    1.6358    0.3394 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5930    2.8123    0.4803 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0774    0.5189    0.3366 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3659    0.3982    0.8974 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1849   -0.6134    0.1767 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8716   -1.8739   -0.1324 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.5617   -0.6440   -0.3458 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2559   -0.9947    0.2651 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2585    0.0423   -0.2157 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2594   -2.8286    0.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3366   -3.2631   -1.0155 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1610   -1.0049   -1.6928 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0116   -0.8130    1.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5480    0.8099    1.3559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2974    0.5621    1.1267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8988   -1.3497    1.2656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0049   -3.0696   -0.5001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8515   -1.9004   -1.5909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6545   -2.1063   -0.4297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0485   -0.1818   -0.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5589    1.6076    1.3905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2331    1.8436   -1.2429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4767    0.7306   -2.6602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7278    2.2295   -1.3025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2891    3.4650    0.3088 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2788    3.3263    0.6733 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3584    0.0797    1.9824 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8683    1.3904    0.8769 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9674   -1.0242    0.8171 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5727   -0.2582   -0.8119 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4567   -0.4681   -1.4492 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3317   -0.8392    1.3809 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9153   -2.0269    0.0535 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2885   -0.0159   -1.3408 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4 17  1  0
 17 18  1  0
 18 19  2  0
 19 28  1  0
 28 27  1  0
 27 26  1  0
 26 25  1  0
 25 24  1  0
 24 23  1  0
 23 22  1  0
 22 20  1  0
 20 21  2  0
 28  3  1  0
  3  2  1  0
  2  1  2  3
  6 15  1  0
 15 16  1  0
 15 13  1  0
 13 14  1  0
 13 11  1  0
 11 12  1  0
 11  8  1  0
  3  4  1  0
 20 19  1  0
 22 26  1  0
 10 38  1  0
  9 36  1  0
  9 37  1  0
  8 35  1  1
  6 34  1  1
  4 33  1  1
 18 45  1  0
 28 53  1  6
 27 51  1  0
 27 52  1  0
 26 50  1  6
 24 48  1  0
 24 49  1  0
 23 46  1  0
 23 47  1  0
  3 32  1  1
  2 31  1  0
  1 29  1  0
  1 30  1  0
 15 43  1  6
 16 44  1  0
 13 41  1  6
 14 42  1  0
 11 39  1  6
 12 40  1  0
M  END


  Mrv1652304282214352D          

 28 31  0  0  1  0            999 V2000
    3.3523    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.1104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0668    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.9246    2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6391    1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6391    1.1104    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.9246    0.6979    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2102    1.1104    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4957    0.6979    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246   -0.1271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3536    0.6979    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3536    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0681    1.9354    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -0.1271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  1  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  2  0  0  0  0
  5  9  1  6  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  1  0  0  0
 14 17  1  6  0  0  0
 13 18  1  1  0  0  0
 12 19  1  6  0  0  0
 19 20  1  0  0  0  0
  2 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 24 23  1  1  0  0  0
 24 25  1  0  0  0  0
  1 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0067736

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@H]1O[C@@H](O[C@@H]2OC=C3[C@@H](C[C@@H]4SCCN4C3=O)[C@@H]2C=C)[C@H](O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C18H25NO8S/c1-2-8-9-5-12-19(3-4-28-12)16(24)10(9)7-25-17(8)27-18-15(23)14(22)13(21)11(6-20)26-18/h2,7-9,11-15,17-18,20-23H,1,3-6H2/t8-,9-,11+,12-,13+,14-,15+,17-,18-/m0/s1

> <INCHI_KEY>
RMTHFMSBPWQULL-AUGZOHCHSA-N

> <FORMULA>
C18H25NO8S

> <MOLECULAR_WEIGHT>
415.46

> <EXACT_MASS>
415.130087943

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
41.55953618170771

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(7S,9S,10S,11S)-10-ethenyl-11-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0^{3,7}]tridec-1(13)-en-2-one

> <ALOGPS_LOGP>
-0.70

> <JCHEM_LOGP>
-1.5380306629999998

> <ALOGPS_LOGS>
-1.24

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.198719032333006

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.20701619367995

> <JCHEM_PKA_STRONGEST_BASIC>
-0.08913447436690303

> <JCHEM_POLAR_SURFACE_AREA>
128.92000000000002

> <JCHEM_REFRACTIVITY>
98.54039999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.38e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(7S,9S,10S,11S)-10-ethenyl-11-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0^{3,7}]tridec-1(13)-en-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.591   1.303   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       8.925   2.073   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       8.925   3.613   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.591   5.923   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.258   6.693   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      10.259   4.383   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      11.592   3.613   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      12.926   4.383   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      14.260   3.613   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.260   2.073   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.926   1.303   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.592   2.073   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      10.259   1.303   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      12.926  -0.237   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      15.593   1.303   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      15.593   4.383   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      16.927   3.613   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       4.924  -0.237   0.000  0.00  0.00           O+0
HETATM   23  N   UNK     0       3.590   2.073   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   26  S   UNK     0       2.126   4.089   0.000  0.00  0.00           S+0
HETATM   27  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.126   1.597   0.000  0.00  0.00           C+0
CONECT    1    2    6   25                                                  
CONECT    2    1    3   21                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    9                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    5   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   19                                                  
CONECT   13   12   14   18                                                  
CONECT   14   13   15   17                                                  
CONECT   15   14   10   16                                                  
CONECT   16   15                                                            
CONECT   17   14                                                            
CONECT   18   13                                                            
CONECT   19   12   20                                                       
CONECT   20   19                                                            
CONECT   21    2   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   28                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24    1                                                       
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   23                                                       
MASTER        0    0    0    0    0    0    0    0   28    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₂₅NO₈S

Average Mass

415.4600 Da

Monoisotopic Mass

415.13009 Da

IUPAC Name

(7S,9S,10S,11S)-10-ethenyl-11-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0^{3,7}]tridec-1(13)-en-2-one

Traditional Name

(7S,9S,10S,11S)-10-ethenyl-11-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0^{3,7}]tridec-1(13)-en-2-one

CAS Registry Number

Not Available

SMILES

OC[C@H]1O[C@@H](O[C@@H]2OC=C3[C@@H](C[C@@H]4SCCN4C3=O)[C@@H]2C=C)[C@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C18H25NO8S/c1-2-8-9-5-12-19(3-4-28-12)16(24)10(9)7-25-17(8)27-18-15(23)14(22)13(21)11(6-20)26-18/h2,7-9,11-15,17-18,20-23H,1,3-6H2/t8-,9-,11+,12-,13+,14-,15+,17-,18-/m0/s1

InChI Key

RMTHFMSBPWQULL-AUGZOHCHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lonicera xylosterum L.	Plant	KNApSAcK
Lonicera xylosteum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

Hexose monosaccharide
O-glycosyl compound
Piperidinone
Delta-lactam
Piperidine
Oxane
Monosaccharide
Vinylogous ester
Thiazolidine
Tertiary carboxylic acid amide
Secondary alcohol
Lactam
Carboxamide group
Oxacycle
Azacycle
Organoheterocyclic compound
Dialkylthioether
Hemithioaminal
Thioether
Polyol
Carboxylic acid derivative
Acetal
Organic nitrogen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organonitrogen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.7	ALOGPS
logP	-1.5	ChemAxon
logS	-1.2	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-0.089	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	128.92 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	98.54 m³·mol⁻¹	ChemAxon
Polarizability	41.56 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162843104

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Xylostosidine (NP0067736)

MOL for NP0067736 ((-)-Xylostosidine)

3D MOL for NP0067736 ((-)-Xylostosidine)

3D SDF for NP0067736 ((-)-Xylostosidine)

3D-SDF for NP0067736 ((-)-Xylostosidine)

PDB for NP0067736 ((-)-Xylostosidine)

3D PDB for NP0067736 ((-)-Xylostosidine)

SMILES for NP0067736 ((-)-Xylostosidine)

INCHI for NP0067736 ((-)-Xylostosidine)

Structure for NP0067736 ((-)-Xylostosidine)

3D Structure for NP0067736 ((-)-Xylostosidine)