NP-MRD: Showing NP-Card for Buxozine C (NP0067683)

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Record Information

Version

2.0

Created at

2022-04-28 12:31:29 UTC

Updated at

2022-04-28 12:31:29 UTC

NP-MRD ID

NP0067683

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Buxozine C

Description

Buxozine C, also known as buxozine-C, belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Buxozine C is found in Buxus sempervirens . Buxozine C was first documented in 2006 (PMID: 17149794). Based on a literature review very few articles have been published on Buxozine C.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282214312D          

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M  END

     RDKit          3D

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M  END


  Mrv1652304282214312D          

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M  END
> <DATABASE_ID>
NP0067683

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN[C@H]1CC[C@]23C[C@]22CC[C@]4(C)[C@@H]5[C@@H](C[C@@]4(C)[C@@H]2CC[C@H]3C1(C)C)OCN(C)[C@H]5C

> <INCHI_IDENTIFIER>
InChI=1S/C27H46N2O/c1-17-22-18(30-16-29(17)7)14-25(5)20-9-8-19-23(2,3)21(28-6)10-11-26(19)15-27(20,26)13-12-24(22,25)4/h17-22,28H,8-16H2,1-7H3/t17-,18+,19-,20-,21-,22-,24+,25-,26+,27-/m0/s1

> <INCHI_KEY>
IBBJBVLTEQHUQV-ZUDQDPCPSA-N

> <FORMULA>
C27H46N2O

> <MOLECULAR_WEIGHT>
414.678

> <EXACT_MASS>
414.361014109

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
51.78485794086746

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4R,5S,6S,10R,12S,13S,16R,18S,21R)-N,4,6,7,12,17,17-heptamethyl-9-oxa-7-azahexacyclo[11.9.0.0^{1,21}.0^{4,12}.0^{5,10}.0^{16,21}]docosan-18-amine

> <ALOGPS_LOGP>
4.44

> <JCHEM_LOGP>
4.4851963150000005

> <ALOGPS_LOGS>
-5.81

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA_STRONGEST_BASIC>
10.75283068119443

> <JCHEM_POLAR_SURFACE_AREA>
24.5

> <JCHEM_REFRACTIVITY>
122.6728

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.42e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R,5S,6S,10R,12S,13S,16R,18S,21R)-N,4,6,7,12,17,17-heptamethyl-9-oxa-7-azahexacyclo[11.9.0.0^{1,21}.0^{4,12}.0^{5,10}.0^{16,21}]docosan-18-amine

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -0.904  -0.293   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.532  -1.700   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.627  -2.946   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.904  -2.787   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.532  -1.380   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.627  -0.134   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.063  -1.220   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.968  -2.467   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.340  -3.873   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.808  -4.033   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.499  -2.307   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.127  -0.901   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.223   0.346   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.691   0.186   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.658  -1.063   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.977  -2.570   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.643  -3.339   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       9.441  -3.047   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      10.587  -2.017   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0      10.268  -0.510   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0       8.803  -0.033   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.484   1.473   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      11.413   0.519   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.898   0.432   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.022  -3.771   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.159   0.026   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.842  -3.894   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.521  -4.483   0.000  0.00  0.00           C+0
HETATM   29  N   UNK     0      -3.063  -1.860   0.000  0.00  0.00           N+0
HETATM   30  C   UNK     0      -3.691  -3.266   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   29                                                  
CONECT    3    2    4   27   28                                             
CONECT    4    3    5   10                                                  
CONECT    5    4    6    7   26                                             
CONECT    6    5    1                                                       
CONECT    7    5    8   14   26                                             
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9    4                                                       
CONECT   11    8   12   17   25                                             
CONECT   12   11   13   15   24                                             
CONECT   13   12   14                                                       
CONECT   14   13    7                                                       
CONECT   15   12   16   21                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   11                                                       
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   23                                                  
CONECT   21   20   15   22                                                  
CONECT   22   21                                                            
CONECT   23   20                                                            
CONECT   24   12                                                            
CONECT   25   11                                                            
CONECT   26    7    5                                                       
CONECT   27    3                                                            
CONECT   28    3                                                            
CONECT   29    2   30                                                       
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   70    0
END

View in JSmol

Synonyms

Value	Source
Buxozine-C	MeSH

Chemical Formula

C₂₇H₄₆N₂O

Average Mass

414.6780 Da

Monoisotopic Mass

414.36101 Da

IUPAC Name

(1S,4R,5S,6S,10R,12S,13S,16R,18S,21R)-N,4,6,7,12,17,17-heptamethyl-9-oxa-7-azahexacyclo[11.9.0.0^{1,21}.0^{4,12}.0^{5,10}.0^{16,21}]docosan-18-amine

Traditional Name

(1S,4R,5S,6S,10R,12S,13S,16R,18S,21R)-N,4,6,7,12,17,17-heptamethyl-9-oxa-7-azahexacyclo[11.9.0.0^{1,21}.0^{4,12}.0^{5,10}.0^{16,21}]docosan-18-amine

CAS Registry Number

Not Available

SMILES

CN[C@H]1CC[C@]23C[C@]22CC[C@]4(C)[C@@H]5[C@@H](C[C@@]4(C)[C@@H]2CC[C@H]3C1(C)C)OCN(C)[C@H]5C

InChI Identifier

InChI=1S/C27H46N2O/c1-17-22-18(30-16-29(17)7)14-25(5)20-9-8-19-23(2,3)21(28-6)10-11-26(19)15-27(20,26)13-12-24(22,25)4/h17-22,28H,8-16H2,1-7H3/t17-,18+,19-,20-,21-,22-,24+,25-,26+,27-/m0/s1

InChI Key

IBBJBVLTEQHUQV-ZUDQDPCPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Buxus sempervirens	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Pinguisane sesquiterpenoid
1,3-oxazinane
Oxazinane
Hemiaminal
Secondary aliphatic amine
Secondary amine
Oxacycle
Azacycle
Organoheterocyclic compound
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Amine
Organic nitrogen compound
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.44	ALOGPS
logP	4.49	ChemAxon
logS	-5.8	ALOGPS
pKa (Strongest Basic)	10.75	ChemAxon
Physiological Charge	2	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	24.5 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	122.67 m³·mol⁻¹	ChemAxon
Polarizability	51.78 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00025485

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25228668

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Liu HF, Ji M, Cai J: Short and efficient approach towards buxozine-C, an alkaloid from Buxus sempervirens. Arch Pharm (Weinheim). 2006 Dec;339(12):675-6. doi: 10.1002/ardp.200600063. [PubMed:17149794 ]

Showing NP-Card for Buxozine C (NP0067683)

MOL for NP0067683 (Buxozine C)

3D MOL for NP0067683 (Buxozine C)

3D SDF for NP0067683 (Buxozine C)

3D-SDF for NP0067683 (Buxozine C)

PDB for NP0067683 (Buxozine C)

3D PDB for NP0067683 (Buxozine C)

SMILES for NP0067683 (Buxozine C)

INCHI for NP0067683 (Buxozine C)

Structure for NP0067683 (Buxozine C)

3D Structure for NP0067683 (Buxozine C)