NP-MRD: Showing NP-Card for Coronaridine hydroxyindolenine (NP0067412)

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Record Information

Version

2.0

Created at

2022-04-28 12:16:38 UTC

Updated at

2022-04-28 12:16:38 UTC

NP-MRD ID

NP0067412

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Coronaridine hydroxyindolenine

Description

Methyl (1S,10R,15R,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]Nonadeca-2,4,6,8-tetraene-1-carboxylate belongs to the class of organic compounds known as ibogan-type alkaloids. These are indole alkaloids with a structure based on the ibogamine skeleton or a derivative thereof. Ibogamine is a pentacyclic heterocyclic compound consisting of an indole fused to an azepane-containing tricyclic moiety ring. Iboga alkaloids arise from the cyclization of a secodine-type precursor through the formation of a 16,21 bond. Coronaridine hydroxyindolenine is found in Conopharyngia durissima, Tabernaemontana divaricata, Ervatamia coronaria (Jacq.), Ervatamia divaricata Gouyahua, Tabernaemontana bufalina Lour., Tabernaemontana attenuata (Miers)Urb., Tabernaemontana crassa, Tabernaemontana divaricata (L.) R.Br. , Tabernaemontana heyneana , Tabernaemontana olivacea Mull.Arg., Tabernaemontana quadrangularis and Tabernaemontana retusa (Lam.) Pichon. Based on a literature review very few articles have been published on methyl (1S,10R,15R,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]Nonadeca-2,4,6,8-tetraene-1-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282214162D          

 26 30  0  0  1  0            999 V2000
    4.6324   -1.0429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7052   -0.2211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0299    0.2529    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2818   -0.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2090   -0.9168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8843   -1.3907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4050   -1.1015    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9808   -0.3939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5227    0.2282    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0359   -0.2350    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4310   -1.1245    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7271   -1.8624    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4186   -2.3075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1734   -1.9332    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4613   -1.4761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3956   -0.3913    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7214   -0.9065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3668   -0.0646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1864   -0.6917    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0057   -0.7890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3310   -1.5471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7120    0.5237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2071    1.1836    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1070    0.6226    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4310    1.3813    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9748   -1.6980    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  7 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 10 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 11 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 10 22  1  1  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
  7 26  1  1  0  0  0
M  END

     RDKit          3D

 52 56  0  0  0  0  0  0  0  0999 V2000
   -3.7829   -1.0535   -1.6109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4361    0.3831   -1.4163 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5603    0.6448   -0.2277 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1752    0.2168    1.0775 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1242   -0.5092    1.9149 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7649   -1.7596    1.0986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1132   -1.3246   -0.0732 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0797   -1.9599   -0.4500 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1213   -2.1412    0.5962 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8145   -0.8799    0.9748 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0562   -0.7743    2.3423 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0640    0.2667    0.4608 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7939    0.9432   -0.3924 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0488    0.3282   -0.5168 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1896    0.6171   -1.2703 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3248   -0.1512   -1.2231 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3618   -1.2596   -0.4038 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2600   -1.5799    0.3550 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1201   -0.7864    0.2911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3271    0.7762    0.7258 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3767    2.2488    0.5729 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7149    2.9679    1.5425 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0620    2.8895   -0.6121 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1208    4.3203   -0.7252 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8607    0.3441    2.0481 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1896    0.0862   -0.3420 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4653   -1.4368   -0.8203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3339   -1.1449   -2.5695 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8932   -1.7085   -1.7022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3813    0.9447   -1.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9419    0.7848   -2.3032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4570    1.7692   -0.1653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5331    1.0623    1.6951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0054   -0.4989    0.9419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4929   -0.7659    2.9060 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7696   -2.2137    0.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2557   -2.5005    1.7120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1358   -2.9729   -0.9005 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5449   -1.3841   -1.2872 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8941   -2.8451    0.1748 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7678   -2.6316    1.5202 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5521    0.0801    2.4700 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1894    1.4832   -1.9240 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2093    0.0972   -1.8257 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2532   -1.8967   -0.3412 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3126   -2.4621    0.9963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1848    4.6078   -0.8272 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4444    4.6692   -1.5879 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2382    4.7751    0.2442 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1759   -0.1941    2.6947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1999    1.2622    2.6076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8062    0.2666   -1.3523 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  1
 10 19  1  0
 19 18  2  0
 18 17  1  0
 17 16  2  0
 16 15  1  0
 15 14  2  0
 14 13  1  0
 13 12  2  0
 12 20  1  0
 20 25  1  0
 20 26  1  0
 20 21  1  1
 21 22  2  0
 21 23  1  0
 23 24  1  0
 26  3  1  0
 25  5  1  0
 26  7  1  0
 12 10  1  0
 14 19  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  1
  4 33  1  0
  4 34  1  0
  5 35  1  1
  6 36  1  0
  6 37  1  0
  8 38  1  0
  8 39  1  0
  9 40  1  0
  9 41  1  0
 11 42  1  0
 18 46  1  0
 17 45  1  0
 16 44  1  0
 15 43  1  0
 25 50  1  0
 25 51  1  0
 26 52  1  6
 24 47  1  0
 24 48  1  0
 24 49  1  0
M  END


  Mrv1652304282214162D          

 26 30  0  0  1  0            999 V2000
    4.6324   -1.0429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7052   -0.2211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0299    0.2529    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2818   -0.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2090   -0.9168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8843   -1.3907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4050   -1.1015    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9808   -0.3939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5227    0.2282    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0359   -0.2350    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4310   -1.1245    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7271   -1.8624    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4186   -2.3075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1734   -1.9332    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4613   -1.4761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3956   -0.3913    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7214   -0.9065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3668   -0.0646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1864   -0.6917    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0057   -0.7890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3310   -1.5471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7120    0.5237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2071    1.1836    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1070    0.6226    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4310    1.3813    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9748   -1.6980    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  7 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 10 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 11 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 10 22  1  1  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
  7 26  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0067412

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@H]1C[C@H]2CN3CC[C@@]4(O)C5=CC=CC=C5N=C4[C@](C2)([C@H]13)C(=O)OC

> <INCHI_IDENTIFIER>
InChI=1S/C21H26N2O3/c1-3-14-10-13-11-20(19(24)26-2)17(14)23(12-13)9-8-21(25)15-6-4-5-7-16(15)22-18(20)21/h4-7,13-14,17,25H,3,8-12H2,1-2H3/t13-,14+,17+,20+,21-/m1/s1

> <INCHI_KEY>
PEBWIYPIKTWOBT-XFFQHTBTSA-N

> <FORMULA>
C21H26N2O3

> <MOLECULAR_WEIGHT>
354.45

> <EXACT_MASS>
354.194342705

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
38.810541014556044

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1S,10R,15R,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0^{2,10}.0^{4,9}.0^{13,18}]nonadeca-2,4,6,8-tetraene-1-carboxylate

> <ALOGPS_LOGP>
2.38

> <JCHEM_LOGP>
3.1198180579999994

> <ALOGPS_LOGS>
-3.42

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.683638414770886

> <JCHEM_PKA_STRONGEST_BASIC>
8.975470487932968

> <JCHEM_POLAR_SURFACE_AREA>
62.13000000000001

> <JCHEM_REFRACTIVITY>
100.44700000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.34e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1S,10R,15R,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0^{2,10}.0^{4,9}.0^{13,18}]nonadeca-2,4,6,8-tetraene-1-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       8.647  -1.947   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.783  -0.413   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.522   0.472   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.126  -0.177   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.990  -1.711   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.251  -2.596   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.489  -2.056   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.698  -0.735   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       4.709   0.426   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       1.934  -0.439   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.805  -2.099   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       1.357  -3.476   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       2.648  -4.307   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.057  -3.609   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.728  -2.755   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.605  -0.730   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.213  -1.692   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.685  -0.121   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.348  -1.291   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.877  -1.473   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.485  -2.888   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.329   0.978   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       2.253   2.209   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      -0.200   1.162   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -0.804   2.578   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       5.553  -3.170   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    9                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   14   26                                             
CONECT    8    7    9   10                                                  
CONECT    9    8    4                                                       
CONECT   10    8   11   17   22                                             
CONECT   11   10   12   19                                                  
CONECT   12   11   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13    7                                                       
CONECT   15   12   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16   10                                                       
CONECT   18   16   19                                                       
CONECT   19   18   11   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   10   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24                                                            
CONECT   26    7                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

View in JSmol

Synonyms

Value	Source
Methyl (1S,10R,15R,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0,.0,.0,]nonadeca-2,4,6,8-tetraene-1-carboxylic acid	Generator

Chemical Formula

C₂₁H₂₆N₂O₃

Average Mass

354.4500 Da

Monoisotopic Mass

354.19434 Da

IUPAC Name

methyl (1S,10R,15R,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0^{2,10}.0^{4,9}.0^{13,18}]nonadeca-2,4,6,8-tetraene-1-carboxylate

Traditional Name

methyl (1S,10R,15R,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0^{2,10}.0^{4,9}.0^{13,18}]nonadeca-2,4,6,8-tetraene-1-carboxylate

CAS Registry Number

Not Available

SMILES

CC[C@H]1C[C@H]2CN3CC[C@@]4(O)C5=CC=CC=C5N=C4[C@](C2)([C@H]13)C(=O)OC

InChI Identifier

InChI=1S/C21H26N2O3/c1-3-14-10-13-11-20(19(24)26-2)17(14)23(12-13)9-8-21(25)15-6-4-5-7-16(15)22-18(20)21/h4-7,13-14,17,25H,3,8-12H2,1-2H3/t13-,14+,17+,20+,21-/m1/s1

InChI Key

PEBWIYPIKTWOBT-XFFQHTBTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Conopharyngia durissima	Plant	KNApSAcK
Ervatamia coronaria	LOTUS Database	35616633
Ervatamia coronaria (Jacq.)	Plant	KNApSAcK
Ervatamia divaricata Gouyahua	Plant	KNApSAcK
Ervatamia hainanensis	Plant	KNApSAcK
Tabernaemontana attenuata (Miers) Urb.	Plant	KNApSAcK
Tabernaemontana crassa	LOTUS Database	35616633
Tabernaemontana divaricata (L.) R.Br.	Plant	KNApSAcK
Tabernaemontana heyneana	Plant	KNApSAcK
Tabernaemontana olivacea Mull.Arg.	Plant	KNApSAcK
Tabernaemontana quadrangularis	Plant	KNApSAcK
Tabernaemontana retusa (Lam.) Pichon	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ibogan-type alkaloids. These are indole alkaloids with a structure based on the ibogamine skeleton or a derivative thereof. Ibogamine is a pentacyclic heterocyclic compound consisting of an indole fused to an azepane-containing tricyclic moiety ring. Iboga alkaloids arise from the cyclization of a secodine-type precursor through the formation of a 16,21 bond.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Ibogan-type alkaloids

Sub Class

Not Available

Direct Parent

Ibogan-type alkaloids

Alternative Parents

Substituents

Ibogan skeleton
Catharanthine skeleton
3-alkylindole
Indole or derivatives
Piperidinecarboxylic acid
Azepane
Aralkylamine
Piperidine
Benzenoid
Tertiary alcohol
Methyl ester
Amino acid or derivatives
Carboxylic acid ester
Ketimine
Tertiary amine
Tertiary aliphatic amine
Azacycle
Propargyl-type 1,3-dipolar organic compound
Carboxylic acid derivative
Organic 1,3-dipolar compound
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Organic oxide
Imine
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Amine
Carbonyl group
Organonitrogen compound
Organooxygen compound
Hydrocarbon derivative
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.38	ALOGPS
logP	3.12	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	12.68	ChemAxon
pKa (Strongest Basic)	8.98	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	62.13 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	100.45 m³·mol⁻¹	ChemAxon
Polarizability	38.81 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

154496378

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Coronaridine hydroxyindolenine (NP0067412)

MOL for NP0067412 (Coronaridine hydroxyindolenine)

3D MOL for NP0067412 (Coronaridine hydroxyindolenine)

3D SDF for NP0067412 (Coronaridine hydroxyindolenine)

3D-SDF for NP0067412 (Coronaridine hydroxyindolenine)

PDB for NP0067412 (Coronaridine hydroxyindolenine)

3D PDB for NP0067412 (Coronaridine hydroxyindolenine)

SMILES for NP0067412 (Coronaridine hydroxyindolenine)

INCHI for NP0067412 (Coronaridine hydroxyindolenine)

Structure for NP0067412 (Coronaridine hydroxyindolenine)

3D Structure for NP0067412 (Coronaridine hydroxyindolenine)